mRNA_H-canaliculatus_F_contig14555.3519.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14555.3519.1
Unique NamemRNA_H-canaliculatus_F_contig14555.3519.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14555.3519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14555contigH-canaliculatus_F_contig14555:265..1073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size365
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14555.3519.1prot_H-canaliculatus_F_contig14555.3519.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14555 273..1073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929205.6485732-UTR-H-canaliculatus_F_contig14555:264..2721622929205.6485732-UTR-H-canaliculatus_F_contig14555:264..272Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14555 265..272 +
1696845717.2551305-UTR-H-canaliculatus_F_contig14555:264..2721696845717.2551305-UTR-H-canaliculatus_F_contig14555:264..272Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14555 265..272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929205.6645887-CDS-H-canaliculatus_F_contig14555:272..2871622929205.6645887-CDS-H-canaliculatus_F_contig14555:272..287Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14555 273..287 +
1696845717.26437-CDS-H-canaliculatus_F_contig14555:272..2871696845717.26437-CDS-H-canaliculatus_F_contig14555:272..287Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14555 273..287 +
1622929205.6785483-CDS-H-canaliculatus_F_contig14555:731..10731622929205.6785483-CDS-H-canaliculatus_F_contig14555:731..1073Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14555 732..1073 +
1696845717.274345-CDS-H-canaliculatus_F_contig14555:731..10731696845717.274345-CDS-H-canaliculatus_F_contig14555:731..1073Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14555 732..1073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14555.3519.1

>prot_H-canaliculatus_F_contig14555.3519.1 ID=prot_H-canaliculatus_F_contig14555.3519.1|Name=mRNA_H-canaliculatus_F_contig14555.3519.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=119bp
MQRSEAEAPPAPSLVLWFARDVLRARSPGQARCNLFVQFLLAHALAWCSL
GKKENDFDMFAGDQNSLLSPSFPLTHHGTSLYSCSSHLRKRLPPRFLPRP
LVSLSSRHPPSGHKGKTR*
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mRNA from alignment at H-canaliculatus_F_contig14555:265..1073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14555.3519.1 ID=mRNA_H-canaliculatus_F_contig14555.3519.1|Name=mRNA_H-canaliculatus_F_contig14555.3519.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=809bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14555:265..1073+ (Hapterophycus canaliculatus Oshoro5f female)
AAAACCTCATGCAGCGCTCGGAGGTGATGTCAGCAACAACAAGTGCTTGT
TCCGGTTTCTTATTCGGGGAGGGAGGGGGGGGGTCGATGGGGTCGGCTTA
AAGGTTCTAAGTGGGGTTCGGAAGGGGAGGGGTAAGCCGGAGGCGGAGAA
CAAAAAAGGCGTCAGCTTTTGCGGCGGCGCTTGTGCGATGACCGTTTTGC
TCGCGCTACCCTTGCGCTATTTCCTGTAACGACCCAACATTCCTCTTCAA
AGCACCTCCTACTCCGACTGTGGATTCGTTCGTTATCAGGGGCTCAGTCA
GTATCCTCGTCACTCTGCCGGCCGCAAACTTCGCCGCAAACGTGTGACGA
TGCGAAAGATCACGACTAGGCGCGGCCCTAAATCCATCCGTGCTCTGTCC
TGTTGTCGCCTGTTGCTTCTGCTGGTGTGGGTCTAATTTTGCTGTCATAT
GCGGGGAGATGCTGCAGGCGGAGGCGCCCCCTGCTCCGTCACTGGTGTTG
TGGTTTGCGCGAGACGTGCTCCGCGCTCGCAGTCCGGGCCAAGCGCGGTG
TAATTTATTCGTCCAGTTCTTGCTCGCGCACGCTCTCGCTTGGTGTTCGC
TAGGGAAAAAAGAGAACGATTTCGACATGTTTGCAGGAGATCAGAACAGC
CTGTTATCTCCGTCATTCCCCCTCACCCATCACGGAACGTCTCTCTACTC
CTGCTCCAGTCACCTCCGAAAGCGTCTCCCCCCTCGCTTCCTACCCCGGC
CGCTGGTCTCTCTCTCTTCTCGCCATCCTCCATCCGGACACAAGGGAAAG
ACACGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14555:265..1073+

>mRNA_H-canaliculatus_F_contig14555.3519.1 ID=mRNA_H-canaliculatus_F_contig14555.3519.1|Name=mRNA_H-canaliculatus_F_contig14555.3519.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14555:265..1073+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGCGCTCGGAGATGCAGCGCTCGGAGGCGGAGGCGCCCCCTGCTCC
GTCACTGGTGTTGTGGTTTGCGCGAGACGTGCTCCGCGCTCGCAGTCCGG
GCCAAGCGCGGTGTAATTTATTCGTCCAGTTCTTGCTCGCGCACGCTCTC
GCTTGGTGTTCGCTAGGGAAAAAAGAGAACGATTTCGACATGTTTGCAGG
AGATCAGAACAGCCTGTTATCTCCGTCATTCCCCCTCACCCATCACGGAA
CGTCTCTCTACTCCTGCTCCAGTCACCTCCGAAAGCGTCTCCCCCCTCGC
TTCCTACCCCGGCCGCTGGTCTCTCTCTCTTCTCGCCATCCTCCATCCGG
ACACAAGGGAAAGACACGTTGAGCGGAGGCGCCCCCTGCTCCGTCACTGG
TGTTGTGGTTTGCGCGAGACGTGCTCCGCGCTCGCAGTCCGGGCCAAGCG
CGGTGTAATTTATTCGTCCAGTTCTTGCTCGCGCACGCTCTCGCTTGGTG
TTCGCTAGGGAAAAAAGAGAACGATTTCGACATGTTTGCAGGAGATCAGA
ACAGCCTGTTATCTCCGTCATTCCCCCTCACCCATCACGGAACGTCTCTC
TACTCCTGCTCCAGTCACCTCCGAAAGCGTCTCCCCCCTCGCTTCCTACC
CCGGCCGCTGGTCTCTCTCTCTTCTCGCCATCCTCCATCCGGACACAAGG
GAAAGACACGTTGA
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