mRNA_H-canaliculatus_F_contig1454.3512.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_F_contig1454.3512.1
Unique Name	mRNA_H-canaliculatus_F_contig1454.3512.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)

Homology

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BLAST of mRNA_H-canaliculatus_F_contig1454.3512.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 6.960e-5
Identity = 80/214 (37.38%), Postives = 99/214 (46.26%), Query Frame = 2

Query:  149 SYGSRSTADALATVVCRLANQEQRRRDGYSAEQPA-PSAARGNEMAAAIAGCVEAPPDAAELLACCP-SGAKASTRAGAANPLTTL-PTVAK-SEVGADSNERSDAGGGATCANVKSGGTG---SGAPSSTVLPSGDSGGYCGGEALT---AQTFLDDLAAACGRRQVLFLIPRRIVSRFSGCRRSEVGVVEGVEPVDVARSTMDLLEDLAGDG 760
            S G  +  DALA+ +CR+A+  +R+  G        PS  R    AA IAG V A P  A  +A  P +GA AS    +A+  T   PT A+ S +   S+  SD         VK+ G G   S APS                      A   LDDLA+ACGRRQ+ F + R   SR  G    +V VV GV  VDVARS   LL DL G G
Sbjct: 4075 SDGEAAIMDALASALCRVAHPSRRQGLGCCGSAGGGPSVRRNVSPAATIAGDVTALPVVAAGMAESPRTGAAASDVKPSADCSTVAGPTTAEGSGINPGSHGFSD---------VKAAGAGGVTSAAPSVXXXXXXXXXXXXXXXXXXXDGAGAMLDDLASACGRRQLSFSVSR-FFSRVLG---RDVAVVHGVGSVDVARSAEALLNDLGGAG 4275

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig1454.3512.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig1454.3512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LCN1_ECTSI	6.960e-5	37.38	Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig1454	contig	H-canaliculatus_F_contig1454:5505..7594 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	62.8
Seed ortholog evalue	2.7e-07
Seed eggNOG ortholog	2880.D8LCN1
Preferred name	BRCA2
KEGG ko	ko:K06236,ko:K08775
KEGG Pathway	ko03440,ko03460,ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,ko05200,ko05212,ko05224,map03440,map03460,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165,map05200,map05212,map05224
GOs	GO:0000003,GO:0000075,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000781,GO:0000784,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0000910,GO:0001556,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002020,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006978,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007098,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0007569,GO:0007584,GO:0008022,GO:0008080,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008283,GO:0008285,GO:0008406,GO:0008585,GO:0008608,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0009994,GO:0010033,GO:0010165,GO:0010212,GO:0010225,GO:0010243,GO:0010332,GO:0010468,GO:0010484,GO:0010485,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010639,GO:0010778,GO:0010948,GO:0012501,GO:0012505,GO:0014070,GO:0015630,GO:0015631,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030097,GO:0030141,GO:0030154,GO:0030330,GO:0030879,GO:0031023,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031619,GO:0031667,GO:0031974,GO:0031981,GO:0031982,GO:0032200,GO:0032355,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033260,GO:0033313,GO:0033365,GO:0033554,GO:0033593,GO:0033599,GO:0033600,GO:0033993,GO:0034212,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035556,GO:0035825,GO:0036211,GO:0040007,GO:0040020,GO:0042127,GO:0042221,GO:0042493,GO:0042592,GO:0042770,GO:0042771,GO:0042772,GO:0042802,GO:0043009,GO:0043015,GO:0043060,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045005,GO:0045132,GO:0045137,GO:0045143,GO:0045184,GO:0045786,GO:0045787,GO:0045835,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046545,GO:0046660,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048478,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050000,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051276,GO:0051298,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051445,GO:0051447,GO:0051455,GO:0051598,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060322,GO:0061458,GO:0061640,GO:0061733,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071695,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072332,GO:0072594,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097327,GO:0097708,GO:0098687,GO:0098813,GO:0099086,GO:0099503,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901563,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1902298,GO:1902680,GO:1902969,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1990426,GO:1990505,GO:2000026,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
EggNOG free text desc.	homologous chromosome orientation involved in meiotic metaphase I plate congression
EggNOG OGs	KOG4751@1,KOG4751@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00536,ko03036,ko03400,ko04121,ko04516
Hectar predicted targeting category	other localisation
Exons	1
Model size	2090
Cds size	747
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig1454.3512.1	prot_H-canaliculatus_F_contig1454.3512.1	Hapterophycus canaliculatus Oshoro5f female	polypeptide	H-canaliculatus_F_contig1454 5545..6291 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929204.5790415-UTR-H-canaliculatus_F_contig1454:5504..5544	1622929204.5790415-UTR-H-canaliculatus_F_contig1454:5504..5544	Hapterophycus canaliculatus Oshoro5f female	UTR	H-canaliculatus_F_contig1454 5505..5544 +
1696845716.7482536-UTR-H-canaliculatus_F_contig1454:5504..5544	1696845716.7482536-UTR-H-canaliculatus_F_contig1454:5504..5544	Hapterophycus canaliculatus Oshoro5f female	UTR	H-canaliculatus_F_contig1454 5505..5544 +
1622929204.661125-UTR-H-canaliculatus_F_contig1454:6291..7594	1622929204.661125-UTR-H-canaliculatus_F_contig1454:6291..7594	Hapterophycus canaliculatus Oshoro5f female	UTR	H-canaliculatus_F_contig1454 6292..7594 +
1696845716.7749214-UTR-H-canaliculatus_F_contig1454:6291..7594	1696845716.7749214-UTR-H-canaliculatus_F_contig1454:6291..7594	Hapterophycus canaliculatus Oshoro5f female	UTR	H-canaliculatus_F_contig1454 6292..7594 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929204.5900352-CDS-H-canaliculatus_F_contig1454:5544..6291	1622929204.5900352-CDS-H-canaliculatus_F_contig1454:5544..6291	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1454 5545..6291 +
1696845716.7592356-CDS-H-canaliculatus_F_contig1454:5544..6291	1696845716.7592356-CDS-H-canaliculatus_F_contig1454:5544..6291	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig1454 5545..6291 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_F_contig1454:5505..7594+
coding sequence from alignment at H-canaliculatus_F_contig1454:5505..7594+

protein sequence of mRNA_H-canaliculatus_F_contig1454.3512.1

>prot_H-canaliculatus_F_contig1454.3512.1 ID=prot_H-canaliculatus_F_contig1454.3512.1|Name=mRNA_H-canaliculatus_F_contig1454.3512.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=249bp
MAAGGDSTNGAKSAEADSRDTLAGKEEDYPKPSGAASYGSRSTADALATV
VCRLANQEQRRRDGYSAEQPAPSAARGNEMAAAIAGCVEAPPDAAELLAC
CPSGAKASTRAGAANPLTTLPTVAKSEVGADSNERSDAGGGATCANVKSG
GTGSGAPSSTVLPSGDSGGYCGGEALTAQTFLDDLAAACGRRQVLFLIPR
RIVSRFSGCRRSEVGVVEGVEPVDVARSTMDLLEDLAGDGGVLPLVRC*

mRNA from alignment at H-canaliculatus_F_contig1454:5505..7594+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_F_contig1454.3512.1 ID=mRNA_H-canaliculatus_F_contig1454.3512.1|Name=mRNA_H-canaliculatus_F_contig1454.3512.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2090bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1454:5505..7594+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGCAACCACACCAGTCCCACCTGGTCGAAGCGCCAAGCATGGCTGCAG
GTGGTGACTCCACCAACGGAGCAAAATCGGCAGAGGCAGACTCGCGGGAC
ACGTTGGCGGGGAAGGAGGAGGACTATCCCAAGCCGTCCGGTGCCGCCTC
CTACGGGAGTAGGTCGACGGCGGACGCGCTCGCAACGGTTGTGTGTAGGT
TGGCAAATCAGGAGCAGCGTCGGCGCGACGGCTACTCTGCCGAACAACCC
GCCCCCTCGGCAGCCCGCGGTAACGAGATGGCGGCTGCGATCGCGGGTTG
CGTTGAGGCACCTCCCGACGCGGCCGAGCTTTTAGCTTGTTGCCCAAGCG
GCGCAAAGGCGAGCACCCGAGCGGGGGCCGCCAACCCCTTGACCACGTTG
CCGACGGTCGCGAAGTCAGAAGTCGGCGCCGACTCCAACGAAAGAAGCGA
TGCCGGTGGTGGGGCTACCTGCGCGAACGTCAAGTCTGGTGGAACCGGGT
CTGGCGCACCTTCTTCCACCGTCCTGCCTTCGGGCGACAGCGGCGGTTAT
TGCGGCGGCGAAGCTCTTACCGCGCAGACGTTCTTGGACGATTTGGCCGC
GGCATGCGGCCGGAGGCAGGTGTTGTTTTTGATACCTCGACGGATCGTTT
CTCGCTTCTCGGGGTGTCGCCGCAGCGAAGTCGGAGTGGTGGAAGGAGTC
GAGCCCGTGGACGTGGCTCGGTCGACGATGGACCTCTTGGAAGATCTCGC
CGGTGATGGTGGTGTCTTGCCGCTGGTACGGTGTTGATTGATTTTTCGAT
GGCGTGAGAGGTCGAGGCAGCAGAGGGAGAGAGGTCTGCGGAATATTTTT
CCGCGCGGGTGGGCTGTCTTCCTCTCTGTGGTGTTGCGACTGAACGTTGT
TTGAAACAGCGGTCGGGGAGAGGGGAGGGGCTTGCGCAGTCGGGGCCGTT
CGATCTGGGGATCGGGTGCACTGATTGTTGACTTTGCGCTGCTCATTGCC
TCCACGAAGCACCCCCGTCATGTACGCTTCGTCGCCCTTATAACGAGCAT
TTTGTGGCTTTCTTCGCAGTAGAGCAAGAGAGAAATGTAGAATACGTCGG
ATAGGCGGTTACTATTGGGTTTCCTGAAAGTTGTGGGTGATAGCATCTGA
TGGCATTTGTACATGAAGAAAAGTGTTGGCTGAGGTCGATTGTTCCTGTG
TTTCGTGTGGTGGCTGAAGTTGCTTCAAATCCCAGTTTTGGAAACCAAAC
CATGGATGATGATTTCCATGCATCCGCACATAGCTGTATGTTGCTCACAA
TCAGAAATTTGTCGGTGGATGAAAACCTCAAAATCTCAAAGGTACTGCCG
CCCGAAGATGTCTCGACCTTCGCTGATGGCTGATGGAAGGCTGCAACGCG
CTGCGTCTCGAGCCCTTCACCAAGGTGGAGCCACGACAACAGCATCGTCG
TGTCGTCGCGGACTACGCTCTCCGTTCTTGTTGCTCGAGCGGCGAGGTGT
CGAAGTCAGGCGGGCACCAATTTGTCGGATGAAATTTGATCTGTCAAAAG
AACACGCGGCTCGATTACTGTAGCTGCACCAACGAACGGGATTCGCTTCG
TAGATGCGGTCACAACTATGTATGGCACGGCATGAGCGAATGCCAAACCG
ATGACGCAACAACGGAGAGCGTTCTTTCCCGCCACAAGGAAAAGCAAAAA
GGCGTGGTGACGAATCACCGAGGCTAGGAGGCGAAGGATGTTTGCGATGG
CTTCCTTGGACGAACGTGTGCTGGAATACGAAGTCAGCCTCTCGTTTTTT
CACGTAAGGAAGGCTCCGAAACGAAAAGTAGCACTTCGTCGACTAATATC
TGACCAGGACCGAGCGATGGTACGATACGTTCATCAATTCGTCAAAAGTG
GCCTCCCAACTTTTCGGCGAATGAGAGGAAGCGAGAAAGCATGAAACTGT
GAGTGGAGCACCATTCGCAGTACTCGATGGATCGGCGTGGTGACGAGACG
GACTCGAGGTCAGCGGATGACTAAGATGGGTCGCGTTTCAAACGTGAAGT
GAACACACGCATGTGCACGTAACGTCACACGCGGTCCTTC

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1454:5505..7594+

>mRNA_H-canaliculatus_F_contig1454.3512.1 ID=mRNA_H-canaliculatus_F_contig1454.3512.1|Name=mRNA_H-canaliculatus_F_contig1454.3512.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1494bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1454:5505..7594+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTGCAGGTGGTGACTCCACCAACGGAGCAAAATCGGCAGAGGCAGA
CTCGCGGGACACGTTGGCGGGGAAGGAGGAGGACTATCCCAAGCCGTCCG
GTGCCGCCTCCTACGGGAGTAGGTCGACGGCGGACGCGCTCGCAACGGTT
GTGTGTAGGTTGGCAAATCAGGAGCAGCGTCGGCGCGACGGCTACTCTGC
CGAACAACCCGCCCCCTCGGCAGCCCGCGGTAACGAGATGGCGGCTGCGA
TCGCGGGTTGCGTTGAGGCACCTCCCGACGCGGCCGAGCTTTTAGCTTGT
TGCCCAAGCGGCGCAAAGGCGAGCACCCGAGCGGGGGCCGCCAACCCCTT
GACCACGTTGCCGACGGTCGCGAAGTCAGAAGTCGGCGCCGACTCCAACG
AAAGAAGCGATGCCGGTGGTGGGGCTACCTGCGCGAACGTCAAGTCTGGT
GGAACCGGGTCTGGCGCACCTTCTTCCACCGTCCTGCCTTCGGGCGACAG
CGGCGGTTATTGCGGCGGCGAAGCTCTTACCGCGCAGACGTTCTTGGACG
ATTTGGCCGCGGCATGCGGCCGGAGGCAGGTGTTGTTTTTGATACCTCGA
CGGATCGTTTCTCGCTTCTCGGGGTGTCGCCGCAGCGAAGTCGGAGTGGT
GGAAGGAGTCGAGCCCGTGGACGTGGCTCGGTCGACGATGGACCTCTTGG
AAGATCTCGCCGGTGATGGTGGTGTCTTGCCGCTGGTACGGTGTTGAATG
GCTGCAGGTGGTGACTCCACCAACGGAGCAAAATCGGCAGAGGCAGACTC
GCGGGACACGTTGGCGGGGAAGGAGGAGGACTATCCCAAGCCGTCCGGTG
CCGCCTCCTACGGGAGTAGGTCGACGGCGGACGCGCTCGCAACGGTTGTG
TGTAGGTTGGCAAATCAGGAGCAGCGTCGGCGCGACGGCTACTCTGCCGA
ACAACCCGCCCCCTCGGCAGCCCGCGGTAACGAGATGGCGGCTGCGATCG
CGGGTTGCGTTGAGGCACCTCCCGACGCGGCCGAGCTTTTAGCTTGTTGC
CCAAGCGGCGCAAAGGCGAGCACCCGAGCGGGGGCCGCCAACCCCTTGAC
CACGTTGCCGACGGTCGCGAAGTCAGAAGTCGGCGCCGACTCCAACGAAA
GAAGCGATGCCGGTGGTGGGGCTACCTGCGCGAACGTCAAGTCTGGTGGA
ACCGGGTCTGGCGCACCTTCTTCCACCGTCCTGCCTTCGGGCGACAGCGG
CGGTTATTGCGGCGGCGAAGCTCTTACCGCGCAGACGTTCTTGGACGATT
TGGCCGCGGCATGCGGCCGGAGGCAGGTGTTGTTTTTGATACCTCGACGG
ATCGTTTCTCGCTTCTCGGGGTGTCGCCGCAGCGAAGTCGGAGTGGTGGA
AGGAGTCGAGCCCGTGGACGTGGCTCGGTCGACGATGGACCTCTTGGAAG
ATCTCGCCGGTGATGGTGGTGTCTTGCCGCTGGTACGGTGTTGA