mRNA_H-canaliculatus_F_contig14539.3508.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14539.3508.1
Unique NamemRNA_H-canaliculatus_F_contig14539.3508.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14539.3508.1 vs. uniprot
Match: A0A6H5JKX1_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX1_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.890e-28
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 PGTVLLQPGDPVEFWHAQGLVLGNYESPVPGRQSLIVRTESGERLTIDAGQIVGVW 168
            PGTV+LQPGDP+EFWHAQGLVLGNYESPVPGRQSL+VRTE+GE LTIDAGQIVGVW
Sbjct:   20 PGTVILQPGDPIEFWHAQGLVLGNYESPVPGRQSLLVRTEAGEPLTIDAGQIVGVW 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14539.3508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JKX1_9PHAE5.890e-2891.07RNB domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14539contigH-canaliculatus_F_contig14539:2124..2291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog2880.D8LHL6
EggNOG free text desc.RNB domain
EggNOG OGs2DZTA@1,2S7A3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929204.0432312-CDS-H-canaliculatus_F_contig14539:2123..22911622929204.0432312-CDS-H-canaliculatus_F_contig14539:2123..2291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14539 2124..2291 +
1696845716.6634736-CDS-H-canaliculatus_F_contig14539:2123..22911696845716.6634736-CDS-H-canaliculatus_F_contig14539:2123..2291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14539 2124..2291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14539.3508.1prot_H-canaliculatus_F_contig14539.3508.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14539 2124..2291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14539.3508.1

>prot_H-canaliculatus_F_contig14539.3508.1 ID=prot_H-canaliculatus_F_contig14539.3508.1|Name=mRNA_H-canaliculatus_F_contig14539.3508.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=56bp
PGTVLLQPGDPVEFWHAQGLVLGNYESPVPGRQSLIVRTESGERLTIDAG
QIVGVW
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mRNA from alignment at H-canaliculatus_F_contig14539:2124..2291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14539.3508.1 ID=mRNA_H-canaliculatus_F_contig14539.3508.1|Name=mRNA_H-canaliculatus_F_contig14539.3508.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=168bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14539:2124..2291+ (Hapterophycus canaliculatus Oshoro5f female)
CCTGGGACTGTGCTCCTCCAACCTGGAGACCCGGTCGAGTTTTGGCATGC
TCAAGGCCTCGTCCTGGGCAACTACGAGAGCCCCGTGCCCGGCCGACAGT
CACTCATTGTCCGCACGGAAAGCGGCGAGCGCCTCACCATCGACGCAGGA
CAGATCGTCGGAGTGTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14539:2124..2291+

>mRNA_H-canaliculatus_F_contig14539.3508.1 ID=mRNA_H-canaliculatus_F_contig14539.3508.1|Name=mRNA_H-canaliculatus_F_contig14539.3508.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14539:2124..2291+ (Hapterophycus canaliculatus Oshoro5f female)
CCTGGGACTGTGCTCCTCCAACCTGGAGACCCGGTCGAGTTTTGGCATGC
TCAAGGCCTCGTCCTGGGCAACTACGAGAGCCCCGTGCCCGGCCGACAGT
CACTCATTGTCCGCACGGAAAGCGGCGAGCGCCTCACCATCGACGCAGGA
CAGATCGTCGGAGTGTGGCCTGGGACTGTGCTCCTCCAACCTGGAGACCC
GGTCGAGTTTTGGCATGCTCAAGGCCTCGTCCTGGGCAACTACGAGAGCC
CCGTGCCCGGCCGACAGTCACTCATTGTCCGCACGGAAAGCGGCGAGCGC
CTCACCATCGACGCAGGACAGATCGTCGGAGTGTGG
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