mRNA_H-canaliculatus_F_contig14504.3496.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14504.3496.1
Unique NamemRNA_H-canaliculatus_F_contig14504.3496.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14504.3496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14504contigH-canaliculatus_F_contig14504:3..678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size677
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.0928423-CDS-H-canaliculatus_F_contig14504:2..4041622929203.0928423-CDS-H-canaliculatus_F_contig14504:2..404Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14504 3..404 +
1696845716.2118883-CDS-H-canaliculatus_F_contig14504:2..4041696845716.2118883-CDS-H-canaliculatus_F_contig14504:2..404Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14504 3..404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.1057198-UTR-H-canaliculatus_F_contig14504:404..6781622929203.1057198-UTR-H-canaliculatus_F_contig14504:404..678Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14504 405..678 +
1696845716.2201402-UTR-H-canaliculatus_F_contig14504:404..6781696845716.2201402-UTR-H-canaliculatus_F_contig14504:404..678Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14504 405..678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14504.3496.1prot_H-canaliculatus_F_contig14504.3496.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14504 3..404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14504.3496.1

>prot_H-canaliculatus_F_contig14504.3496.1 ID=prot_H-canaliculatus_F_contig14504.3496.1|Name=mRNA_H-canaliculatus_F_contig14504.3496.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=134bp
RNRRERRGGGCPRAFHASFGWDKEGHEHDLRFPNTISSGPERKGQEDREG
HQQSGSAHVVFVGGERKGRESVEWLVVGCQPYEAWNRRSHACTAVRTAAV
VERQKRLVSKTQRRESESKLYLGLGPQRREVQR*
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mRNA from alignment at H-canaliculatus_F_contig14504:3..678+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14504.3496.1 ID=mRNA_H-canaliculatus_F_contig14504.3496.1|Name=mRNA_H-canaliculatus_F_contig14504.3496.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=676bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14504:3..678+ (Hapterophycus canaliculatus Oshoro5f female)
AGAAACAGGAGGGAGAGGAGGGGGGGGGGGTGCCCTCGAGCATTTCATGC
TTCTTTCGGTTGGGACAAGGAAGGCCACGAGCACGATCTTAGATTCCCGA
ATACTATTTCTAGTGGTCCGGAACGGAAGGGCCAAGAAGATCGAGAAGGA
CACCAACAATCCGGCAGCGCACACGTTGTGTTCGTGGGCGGAGAACGAAA
GGGCCGTGAGAGCGTGGAGTGGTTGGTCGTAGGCTGTCAGCCGTACGAGG
CTTGGAATCGCCGCAGCCATGCTTGTACTGCTGTACGTACTGCTGCGGTC
GTTGAAAGGCAAAAACGTTTGGTATCAAAAACACAGAGGAGAGAGTCCGA
ATCCAAGCTGTATTTGGGCCTGGGCCCCCAACGCCGTGAAGTGCAGCGGT
GAATGGGGATAAAATCGTGAGGCGAGAAAAGCAGATCTCATAGATCTGAA
TCGAATGCCTTATATTACGGCGCTAGTTGCTCGGCCATCCCGTCCTAAGC
TCCCGGTTCGCACGTACTGGAGTAGAGACAAAGGGTCGGTTCGATGTGCG
GCGCAATACCCGGTGGAATCGTAACTTTTACGAACGACTCTACCACCAAC
CAGCACAGCTCGTACCAAAACGTGGGTTCGCTTCTGGACAAAGACCCTCT
CTACTGCATGGCCGGCTGCAAAGACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14504:3..678+

>mRNA_H-canaliculatus_F_contig14504.3496.1 ID=mRNA_H-canaliculatus_F_contig14504.3496.1|Name=mRNA_H-canaliculatus_F_contig14504.3496.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=804bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14504:3..678+ (Hapterophycus canaliculatus Oshoro5f female)
AGAAACAGGAGGGAGAGGAGGGGGGGGGGGTGCCCTCGAGCATTTCATGC
TTCTTTCGGTTGGGACAAGGAAGGCCACGAGCACGATCTTAGATTCCCGA
ATACTATTTCTAGTGGTCCGGAACGGAAGGGCCAAGAAGATCGAGAAGGA
CACCAACAATCCGGCAGCGCACACGTTGTGTTCGTGGGCGGAGAACGAAA
GGGCCGTGAGAGCGTGGAGTGGTTGGTCGTAGGCTGTCAGCCGTACGAGG
CTTGGAATCGCCGCAGCCATGCTTGTACTGCTGTACGTACTGCTGCGGTC
GTTGAAAGGCAAAAACGTTTGGTATCAAAAACACAGAGGAGAGAGTCCGA
ATCCAAGCTGTATTTGGGCCTGGGCCCCCAACGCCGTGAAGTGCAGCGGT
GAAGAAACAGGAGGGAGAGGAGGGGGGGGGGGTGCCCTCGAGCATTTCAT
GCTTCTTTCGGTTGGGACAAGGAAGGCCACGAGCACGATCTTAGATTCCC
GAATACTATTTCTAGTGGTCCGGAACGGAAGGGCCAAGAAGATCGAGAAG
GACACCAACAATCCGGCAGCGCACACGTTGTGTTCGTGGGCGGAGAACGA
AAGGGCCGTGAGAGCGTGGAGTGGTTGGTCGTAGGCTGTCAGCCGTACGA
GGCTTGGAATCGCCGCAGCCATGCTTGTACTGCTGTACGTACTGCTGCGG
TCGTTGAAAGGCAAAAACGTTTGGTATCAAAAACACAGAGGAGAGAGTCC
GAATCCAAGCTGTATTTGGGCCTGGGCCCCCAACGCCGTGAAGTGCAGCG
GTGA
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