mRNA_H-canaliculatus_F_contig145.3485.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig145.3485.1
Unique NamemRNA_H-canaliculatus_F_contig145.3485.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig145.3485.1 vs. uniprot
Match: D7FWR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR4_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 1.250e-80
Identity = 190/344 (55.23%), Postives = 214/344 (62.21%), Query Frame = 1 
Query:   31 FLKKACGRGEEAVLSLLTDPAPTTTWRFPGLLE-ARMQSQADQVSAIRSSQGAVLGVAGCHFWVISAARALLGCRREAAXXXXXXXXXXXXXXXXXXXXXXXXXGVPAASSMLRSRRLAEFLYEMELRRSGRVAEARSAVRRLLASLLFWLPPSXXXXXXXXXXXXXXXXXXXXXXXXATPRPPGYGKLPRPVAGHEKTALSQFQRVLSRQPATAKDAPDEHTPA----RARACPPQSLLCVRKAGE------EISSASGAVPQHGLSEIEESLWLRVFGAVERHAMPCRAEPRQGPTPAHLVPLEKAVAAIENIFGGEAKSAVMAAATKTAATMAAANGSNRR 1029
             L++ACGR E  +LSLL DPAPTT W FPGLLE   M+S  DQV  IRSSQG VLG+AGCH  VI+AA AL+  R    XXXXXXXXXXXXXXXX          VPAASS+LR RRL +FLYE ELRRSGRV  ARSAVRRL+ASLLFWLPP                          T RPPGYG LPR VAGHEKTAL QFQ +L        +  D  +P     R    P  +      AG+      E SS  G   Q G SEIEE LWLRVF AVE HA PCR EPRQGPTPAHLVPL+KA+A++E IFGGE +SA  +A    AA M   +G++RR
Sbjct:  497 LLQQACGRAEGVILSLLADPAPTTPWPFPGLLELVGMKSLVDQVGVIRSSQG-VLGIAGCHSCVIAAASALVAYRXXXXXXXXXXXXXXXXXXXXT---------VPAASSLLRPRRLGQFLYETELRRSGRVGRARSAVRRLVASLLFWLPPPPSLSARARQLAASAEEAGVTAPAQPTSRPPGYGHLPRSVAGHEKTALKQFQSLLCVSNGEGSNG-DGSSPGGFGGRGEIDPSAASAHNSNAGDATASPTESSSGDGGGVQDGFSEIEECLWLRVFAAVESHATPCRTEPRQGPTPAHLVPLDKAIASVEKIFGGEGESAATSAVA--AANMVKKHGASRR 827
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BLAST of mRNA_H-canaliculatus_F_contig145.3485.1 vs. uniprot
Match: A0A6H5JE25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE25_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 7.260e-56
Identity = 160/302 (52.98%), Postives = 175/302 (57.95%), Query Frame = 1 
Query:  136 MQSQADQVSAIRSSQGAVLGVAGCHFWVISAARALLGCRREAAXXXXXXXXXXXXXXXXXXXXXXXXXGVPAASSMLRSRRLAEFLYEMELRRSGRVAEARSAVRRLLASLLFWLPPSXXXXXXXXXXXXXXXXXXXXXXXXA-TPRPPGYGKLPRP--VAGHEKTALSQFQRVLSRQPATAKDAPDEHTPARARACPPQSLLCVRKAGEEISSASGAVPQHGLSEIEESLWLRVFGAVERHAMPCRAEPRQGPTPAHLVPLEKAVAAIENIFGGEAKSAVMAAATKTAATMAAANGSNRRR 1032
            M+S  DQV  IRSSQG VLG+AGCH  VI+AARAL+  RRE  XXXXXXXXXXXXXXXXX         VPAASS+LR RRL +FLYE ELRRSGRV  ARSAVRRL+ASLLFWLP  XX                        T RPPGYG LPR    AG             S   + A DA    T                    E  S  G   Q G SEIEE LWLRVF AVE HA PCR EPRQGPTPAHLVPL+KA+A++E IFGGE +SA   A    AA M    G++RRR
Sbjct:    1 MKSLVDQVGVIRSSQG-VLGIAGCHSCVIAAARALVAYRREXXXXXXXXXXXXXXXXXXX---------VPAASSLLRPRRLGQFLYETELRRSGRVGRARSAVRRLVASLLFWLPXXXXLSSPRARQLAASAEEAGVTVPAQPTFRPPGYGHLPRDGSSAGGFGGRGEIDPSAASAHNSNAGDATGSPT--------------------ESGSGDGGGGQDGFSEIEECLWLRVFAAVESHATPCRTEPRQGPTPAHLVPLDKAIASVEEIFGGEGESAATNAVA--AAEMVKKYGASRRR 270
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig145.3485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWR4_ECTSI1.250e-8055.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JE25_9PHAE7.260e-5652.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig145contigH-canaliculatus_F_contig145:11029..13194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1036
Cds size1035
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig145.3485.1prot_H-canaliculatus_F_contig145.3485.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig145 11029..13194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929201.632586-CDS-H-canaliculatus_F_contig145:11028..114211622929201.632586-CDS-H-canaliculatus_F_contig145:11028..11421Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 11029..11421 -
1696845715.4785695-CDS-H-canaliculatus_F_contig145:11028..114211696845715.4785695-CDS-H-canaliculatus_F_contig145:11028..11421Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 11029..11421 -
1622929201.6474755-CDS-H-canaliculatus_F_contig145:11967..120871622929201.6474755-CDS-H-canaliculatus_F_contig145:11967..12087Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 11968..12087 -
1696845715.487677-CDS-H-canaliculatus_F_contig145:11967..120871696845715.487677-CDS-H-canaliculatus_F_contig145:11967..12087Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 11968..12087 -
1622929201.6631937-CDS-H-canaliculatus_F_contig145:12132..125211622929201.6631937-CDS-H-canaliculatus_F_contig145:12132..12521Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 12133..12521 -
1696845715.506624-CDS-H-canaliculatus_F_contig145:12132..125211696845715.506624-CDS-H-canaliculatus_F_contig145:12132..12521Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 12133..12521 -
1622929201.677309-CDS-H-canaliculatus_F_contig145:13061..131941622929201.677309-CDS-H-canaliculatus_F_contig145:13061..13194Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 13062..13194 -
1696845715.5159287-CDS-H-canaliculatus_F_contig145:13061..131941696845715.5159287-CDS-H-canaliculatus_F_contig145:13061..13194Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 13062..13194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig145.3485.1

>prot_H-canaliculatus_F_contig145.3485.1 ID=prot_H-canaliculatus_F_contig145.3485.1|Name=mRNA_H-canaliculatus_F_contig145.3485.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=345bp
LLDGSASETAFLKKACGRGEEAVLSLLTDPAPTTTWRFPGLLEARMQSQA
DQVSAIRSSQGAVLGVAGCHFWVISAARALLGCRREAAVSSSSPPPSSSP
SSSGGGGAAATTAGVPAASSMLRSRRLAEFLYEMELRRSGRVAEARSAVR
RLLASLLFWLPPSPPPLPRSSLMSAGAAAPAAAAASAATPRPPGYGKLPR
PVAGHEKTALSQFQRVLSRQPATAKDAPDEHTPARARACPPQSLLCVRKA
GEEISSASGAVPQHGLSEIEESLWLRVFGAVERHAMPCRAEPRQGPTPAH
LVPLEKAVAAIENIFGGEAKSAVMAAATKTAATMAAANGSNRRR*
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mRNA from alignment at H-canaliculatus_F_contig145:11029..13194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig145.3485.1 ID=mRNA_H-canaliculatus_F_contig145.3485.1|Name=mRNA_H-canaliculatus_F_contig145.3485.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2166bp|location=Sequence derived from alignment at H-canaliculatus_F_contig145:11029..13194- (Hapterophycus canaliculatus Oshoro5f female)
TTATTGGACGGATCGGCTTCTGAAACGGCGTTTCTGAAAAAGGCGTGCGG
GAGGGGCGAGGAGGCCGTGCTGTCGCTTTTGACCGACCCTGCCCCGACTA
CAACATGGCGCTTCCCGGGGCTCCTGGAGGCGAGTGATGCATGTCCCTTT
CGTTGTGTGCGTTGTGATCTGTAGTGAGAAGTGTTGAATTATTTGACTAC
CTCGTGTTCCAAGGACGTGAGAAGCAGATACGGACAGCACACTGCTGTCA
CCCGTTCACCCTTTTCGAGAAGAACGGCAGCTCTTTCGAGTCTCATCCAT
GATCAACAGGTTCAGGAGACCACCAAGAAACTGCAAATATAGACACACCT
GAATTGAGGCCAGACCCACGGACCACAACCATAACCATCCAAAAAGTACT
GACAGCCTTAAAATTCATTTCACCCCCATCCCTCGCAGAAGAATTGCCTG
CTCTTTTGTGCCTGACAACAAAACGATTACTTTCACGTTCGTAAAAAATT
TGGTTCAGCCAAGCAGCTCATCACACGCCTCTCTGCCTTAGACCATCAAT
CGCATTCTTCACGCTTCACGCGAGGGCGGCCGACAGCCGGCCAAAACCGA
CAACAATGTTCCAACTCAGACCCAACCAACCCACGGGTGCACTCCTAATC
GGAACCCAATAAACAGCTGCTAGGGATGCAGAGCCAAGCGGATCAGGTCA
GCGCCATCCGATCGAGCCAGGGAGCTGTTCTCGGGGTCGCCGGCTGCCAT
TTCTGGGTGATCTCCGCCGCCCGCGCGCTCCTAGGCTGCCGCAGAGAGGC
GGCCGTTTCTTCTTCCTCGCCACCTCCTTCTTCCTCCCCCTCGTCGTCGG
GAGGAGGTGGCGCCGCTGCCACGACAGCGGGGGTGCCGGCGGCGTCGAGC
ATGCTGCGCTCCCGACGGCTCGCGGAATTCCTGTACGAGATGGAGCTGAG
GCGATCTGGCAGGGTGGCGGAGGCGAGGTCGGCGGTCCGGAGGTTGCTTG
CCTCGCTTTTGTTTTGGTTGCCGCCGTCGCCGCCACCGCTGCCGCGATCG
TCGCTGATGTCGGTGGAGGGAGCGGGTGCAGGTGTTGGGGACAGTGGCGG
GGCGGAGGCAGGTGCTGCTGCTCCGGCGGCAGCAGCAGCGTCAGCAGCAA
CTCCTCGGCCGCCGGGGTACGGGAAGCTGCCGAGGCCTGTCGCCGGGCAC
GAAAAGACTGCCTTGAGTCAGTTCCAGGTGATCACTTAAGGGAATAGTGT
GGTAGTGTCACACCATTAGATGAAAAGTGGAAGGAAATATCGTGTTGTGT
AGGACCCAGCTTCTTCTCGGGTGGGGAGGGCATCATCACGCAGAAATTGG
TTCAGCCCAGAGGCATAGACTTGCTGTTCACATGCCGTTGTCGGAACATC
CCAATTTGTCTGCTGCTGTCTGTTTGCTCTACGGAACATTGATTGTTGTC
ACCTCCGTTCCGCATTTCCTCTTCTATCCCCCTTTCTTTGGGATGCGGAA
CTATTCGTAAATTCACATCTTTGGGCTTGCTTCTGCTGATATTCCCACCT
TCCATTGCTCGGCCAAATCAACGCTCTTAACGACGAAAAATCGCGCGGTC
GGTTGTTGTGAACGCGCGGAGACAGCGATTTTGTGCAGGCTTCTTCTGCA
CTAACGATTTTCGATTTTCAGTGCGCACACGTAATCCAGAGAGGGGATAT
TTCCGTGCCGCCGTCACGCCGGGAGACCGCGCGGCTTCGAAATCGTCCGC
TTTTCTTGTCTCGCTGAGACTAGCGAGTATTGAGTCGTCAGCCAGCCACC
GCGAAGGATGCTCCCGATGAACACACGCCCGCCCGCGCGCGTGCGTGCCC
GCCTCAGAGCTTGTTGTGCGTGAGAAAAGCCGGCGAAGAAATCAGCAGCG
CCAGTGGTGCCGTTCCGCAGCATGGGTTGTCCGAGATCGAGGAGAGTCTT
TGGCTCCGGGTTTTTGGCGCCGTCGAGAGGCACGCAATGCCGTGTCGCGC
GGAGCCTCGGCAGGGTCCAACGCCGGCCCACCTCGTGCCTTTGGAGAAAG
CCGTGGCGGCCATCGAGAACATTTTCGGCGGGGAGGCTAAGTCCGCGGTG
ATGGCGGCGGCGACGAAGACGGCCGCAACCATGGCGGCGGCGAATGGGTC
CAACAGAAGACGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig145:11029..13194-

>mRNA_H-canaliculatus_F_contig145.3485.1 ID=mRNA_H-canaliculatus_F_contig145.3485.1|Name=mRNA_H-canaliculatus_F_contig145.3485.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2070bp|location=Sequence derived from alignment at H-canaliculatus_F_contig145:11029..13194- (Hapterophycus canaliculatus Oshoro5f female)
TTATTGGACGGATCGGCTTCTGAAACGGCGTTTCTGAAAAAGGCGTGCGG
GAGGGGCGAGGAGGCCGTGCTGTCGCTTTTGACCGACCCTGCCCCGACTA
CAACATGGCGCTTCCCGGGGCTCCTGGAGGCGATTATTGGACGGATCGGC
TTCTGAAACGGCGTTTCTGAAAAAGGCGTGCGGGAGGGGCGAGGAGGCCG
TGCTGTCGCTTTTGACCGACCCTGCCCCGACTACAACATGGCGCTTCCCG
GGGCTCCTGGAGGCGAGGATGCAGAGCCAAGCGGATCAGGTCAGCGCCAT
CCGATCGAGCCAGGGAGCTGTTCTCGGGGTCGCCGGCTGCCATTTCTGGG
TGATCTCCGCCGCCCGCGCGCTCCTAGGCTGCCGCAGAGAGGCGGCCGTT
TCTTCTTCCTCGCCACCTCCTTCTTCCTCCCCCTCGTCGTCGGGAGGAGG
TGGCGCCGCTGCCACGACAGCGGGGGTGCCGGCGGCGTCGAGCATGCTGC
GCTCCCGACGGCTCGCGGAATTCCTGTACGAGATGGAGCTGAGGCGATCT
GGCAGGGTGGCGGAGGCGAGGTCGGCGGTCCGGAGGTTGCTTGCCTCGCT
TTTGTTTTGGTTGCCGCCGTCGCCGCCACCGCTGCCGCGATCGTCGCTGA
TGTCGGGATGCAGAGCCAAGCGGATCAGGTCAGCGCCATCCGATCGAGCC
AGGGAGCTGTTCTCGGGGTCGCCGGCTGCCATTTCTGGGTGATCTCCGCC
GCCCGCGCGCTCCTAGGCTGCCGCAGAGAGGCGGCCGTTTCTTCTTCCTC
GCCACCTCCTTCTTCCTCCCCCTCGTCGTCGGGAGGAGGTGGCGCCGCTG
CCACGACAGCGGGGGTGCCGGCGGCGTCGAGCATGCTGCGCTCCCGACGG
CTCGCGGAATTCCTGTACGAGATGGAGCTGAGGCGATCTGGCAGGGTGGC
GGAGGCGAGGTCGGCGGTCCGGAGGTTGCTTGCCTCGCTTTTGTTTTGGT
TGCCGCCGTCGCCGCCACCGCTGCCGCGATCGTCGCTGATGTCGGCAGGT
GCTGCTGCTCCGGCGGCAGCAGCAGCGTCAGCAGCAACTCCTCGGCCGCC
GGGGTACGGGAAGCTGCCGAGGCCTGTCGCCGGGCACGAAAAGACTGCCT
TGAGTCAGTTCCAGGCAGGTGCTGCTGCTCCGGCGGCAGCAGCAGCGTCA
GCAGCAACTCCTCGGCCGCCGGGGTACGGGAAGCTGCCGAGGCCTGTCGC
CGGGCACGAAAAGACTGCCTTGAGTCAGTTCCAGCGAGTATTGAGTCGTC
AGCCAGCCACCGCGAAGGATGCTCCCGATGAACACACGCCCGCCCGCGCG
CGTGCGTGCCCGCCTCAGAGCTTGTTGTGCGTGAGAAAAGCCGGCGAAGA
AATCAGCAGCGCCAGTGGTGCCGTTCCGCAGCATGGGTTGTCCGAGATCG
AGGAGAGTCTTTGGCTCCGGGTTTTTGGCGCCGTCGAGAGGCACGCAATG
CCGTGTCGCGCGGAGCCTCGGCAGGGTCCAACGCCGGCCCACCTCGTGCC
TTTGGAGAAAGCCGTGGCGGCCATCGAGAACATTTTCGGCGGGGAGGCTA
AGTCCGCGGTGATGGCGGCGGCGACGAAGACGGCCGCAACCATGGCGGCG
GCGAATGGGTCCAACAGAAGACGGTGACGAGTATTGAGTCGTCAGCCAGC
CACCGCGAAGGATGCTCCCGATGAACACACGCCCGCCCGCGCGCGTGCGT
GCCCGCCTCAGAGCTTGTTGTGCGTGAGAAAAGCCGGCGAAGAAATCAGC
AGCGCCAGTGGTGCCGTTCCGCAGCATGGGTTGTCCGAGATCGAGGAGAG
TCTTTGGCTCCGGGTTTTTGGCGCCGTCGAGAGGCACGCAATGCCGTGTC
GCGCGGAGCCTCGGCAGGGTCCAACGCCGGCCCACCTCGTGCCTTTGGAG
AAAGCCGTGGCGGCCATCGAGAACATTTTCGGCGGGGAGGCTAAGTCCGC
GGTGATGGCGGCGGCGACGAAGACGGCCGCAACCATGGCGGCGGCGAATG
GGTCCAACAGAAGACGGTGA
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