mRNA_H-canaliculatus_F_contig145.3484.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig145.3484.1
Unique NamemRNA_H-canaliculatus_F_contig145.3484.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig145.3484.1 vs. uniprot
Match: D7FWR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR5_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 4.400e-73
Identity = 160/249 (64.26%), Postives = 171/249 (68.67%), Query Frame = 1 
Query:    1 MHVASPGLPEAALRHLFYQA-TMRAPQRSS--SARTGG--RGVDTAADIPLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPSVSRLARAVVEFPLACRGLAPLVASTTTDLEARGLLKQVAYQAKEALGETEKIVNSIKEAQDVATVDRSISGGXXXXXXXXXXXFVPEAEISAVEARAAQLKAFMINAEASRSALDVSKLWISRRMLVAETTLLRAYGGVGPTVRAQDAIRQGRRVRLR 732
            MHVASPGLPEAALRHLF+QA T  AP+ SS  +AR GG  RG  TA       XXXXX                       XXXX  E  S S LARA+  FPLAC GLAPLVAST T+L AR LLKQVA+QAKEAL ETEK+V SI+EAQ      R     XXX        FVPEAEISAVEAR +QL+AFMINA+ SRS LDVSKLWISRRMLVAETTLLRAYGGVGPT RAQDAIRQGRRVRLR
Sbjct:    1 MHVASPGLPEAALRHLFFQAATTGAPRPSSLPAARAGGDGRGQTTAPATXXXXXXXXXRTSNNRSNAGRSGSFRQSGKSDGXXXXDGETTSASGLARAIAGFPLACEGLAPLVASTATELSARSLLKQVAHQAKEALEETEKVVASIREAQGTPAGQRGXXXXXXX--------FVPEAEISAVEARTSQLRAFMINADTSRSVLDVSKLWISRRMLVAETTLLRAYGGVGPTARAQDAIRQGRRVRLR 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig145.3484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWR5_ECTSI4.400e-7364.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig145contigH-canaliculatus_F_contig145:6787..9136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004270.1
Exons3
Model size735
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig145.3484.1prot_H-canaliculatus_F_contig145.3484.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig145 6787..9136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929201.5692952-CDS-H-canaliculatus_F_contig145:6786..69311622929201.5692952-CDS-H-canaliculatus_F_contig145:6786..6931Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 6787..6931 -
1696845715.449121-CDS-H-canaliculatus_F_contig145:6786..69311696845715.449121-CDS-H-canaliculatus_F_contig145:6786..6931Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 6787..6931 -
1622929201.5824542-CDS-H-canaliculatus_F_contig145:7497..76761622929201.5824542-CDS-H-canaliculatus_F_contig145:7497..7676Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 7498..7676 -
1696845715.4585545-CDS-H-canaliculatus_F_contig145:7497..76761696845715.4585545-CDS-H-canaliculatus_F_contig145:7497..7676Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 7498..7676 -
1622929201.5927591-CDS-H-canaliculatus_F_contig145:8725..91361622929201.5927591-CDS-H-canaliculatus_F_contig145:8725..9136Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 8726..9136 -
1696845715.4684334-CDS-H-canaliculatus_F_contig145:8725..91361696845715.4684334-CDS-H-canaliculatus_F_contig145:8725..9136Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 8726..9136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig145.3484.1

>prot_H-canaliculatus_F_contig145.3484.1 ID=prot_H-canaliculatus_F_contig145.3484.1|Name=mRNA_H-canaliculatus_F_contig145.3484.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=245bp
MHVASPGLPEAALRHLFYQATMRAPQRSSSARTGGRGVDTAADIPLPATT
TNTTVTNASRSRSSSKAADSSAGRSGAGAGDGEAPSVSRLARAVVEFPLA
CRGLAPLVASTTTDLEARGLLKQVAYQAKEALGETEKIVNSIKEAQDVAT
VDRSISGGGSGGGGGGGGGFVPEAEISAVEARAAQLKAFMINAEASRSAL
DVSKLWISRRMLVAETTLLRAYGGVGPTVRAQDAIRQGRRVRLR*
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mRNA from alignment at H-canaliculatus_F_contig145:6787..9136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig145.3484.1 ID=mRNA_H-canaliculatus_F_contig145.3484.1|Name=mRNA_H-canaliculatus_F_contig145.3484.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2350bp|location=Sequence derived from alignment at H-canaliculatus_F_contig145:6787..9136- (Hapterophycus canaliculatus Oshoro5f female)
ATGCACGTCGCCAGCCCAGGGCTCCCCGAAGCGGCTCTCCGCCATCTGTT
CTACCAGGCGACCATGAGGGCACCACAGCGGTCTTCCTCCGCTCGGACTG
GAGGAAGGGGGGTTGACACCGCCGCCGATATCCCTCTCCCTGCCACAACC
ACGAACACCACCGTCACGAATGCTTCTCGAAGCCGCTCGTCAAGCAAGGC
CGCAGACAGCAGCGCCGGGAGGAGTGGTGCCGGAGCTGGAGACGGCGAGG
CACCTTCTGTGTCCAGGTTGGCGCGAGCCGTGGTGGAGTTTCCGCTAGCG
TGCCGGGGCTTGGCGCCCCTGGTCGCGTCCACGACGACCGACCTGGAGGC
GAGGGGCCTGCTCAAGCAAGTGGCGTACCAGGCGAAGGAGGCGCTGGGCG
AGACCGAAAAGGTTGGTCGGTTAGTATGTTGGTCTGTCGTTTGATTTGTT
TAGCTTGTTGAGCTATGGGGATACGCGCACGCGCATGATGTTGTGGAAGG
ACGAGACAAAGTAGGGACAGACGAAGACGAGGACCAGCAAGAGATCCGCA
CGTATGAACGTCGCCCGATGGACTTCTCTTCGTTTCTTTCATTGGTTCTC
GCAGCTCCTGGTCGCCCGTATCCCGACCAGAACTGCAGGTGTAATCGTGG
AACTTCCTCGCCCTATCACAGACATGCCCACACCTATACCGCAATGCCCT
GACGAAGGCTGAGACACGGCGGTCCACTAGATGCCTGAACCCCTCACGTA
ATGACGGCAAAGCAGACAGGATTTCAGTCACACGAGAAAGCCGTCTTGGC
GGTCCATTCTTGAAGTACGGCACGCAGGCTTCCGGAGCTGGCTAACGTGC
GCATAGGAAATACTACCTCTCAACAAGAACGGGAACACATCGGATTGAAT
CTCACCATTTGTAGCGGTCAACACCTGTGAAACTCAAATTGTTTCTATTA
GCGGATGTTCACCCGCCGATCCCCTGAAAACTAAACGGGAAAGCGTGGTC
AGAAAGAGGGCAGCGAAGGAAGCTGACGAGTTTGGGGGCTATTTGTGGCG
CGTGACTGACCCTGCGACACGAAGCTGCGCACGACCCGTTCGTGCGTCTC
GAAAAATACGGAAACTTCACAAACAAACGCCCACTGTTTTGAACTCAATA
GAAGCCTCGAGCTACACCTTACATGACTTACCTCAGGAGGTCTTCCAATA
GTGTTGTTATTTTTTCTTTCAAAACGTCCAAACCGCTCGCATGGAGAGCG
CCCGTGAGCCATCTCGTTTTCCGTGCTCCACTGTGTTGTACACCCTGCGA
TCATCAAACCAATCACGTGTTATATTTCCCCATCCCAGCTTCCTTCGCCC
CTCGGCTGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCACT
CGCCCGCCCGCCACCCAAAACGGCTTCAACCCCGACCGAATGAAAACAAC
ACCACACTAGATCGTGAATTCTATAAAAGAGGCTCAGGACGTGGCTACGG
TCGACCGGTCAATCAGCGGCGGCGGAAGTGGAGGTGGAGGTGGCGGCGGT
GGCGGATTCGTCCCGGAGGCCGAAATCTCGGCCGTAGAGGCGAGGGCCGC
TCAGCTCAAAGCTTTCATGATCAACGCCGAGGCGTCACGGTGAGAAATTT
GGCGGCGGGGAGCAAAGGAAGTTGTAGGTTTTGCCTCCCATCCGCAAGAA
ACATACATGCTTCTTTCCTGACCTTTAAGGCAGAGTATGTATACGTCCTA
GCCAGGATGCGTTCGTGCGGGCATGGTATTTGTCAATGGCTCCAAAGGTG
CGCGTCAGAAACAGATTATCCTTGTTGTCTCCCGTTTTACCTGCAAGAAC
GTCCCACTCGACAACACTACAACAATTCCTGCAAAGCCACATGAAAGCGT
TGAAGTTTCTCTGGCCCGTCCAAACCAAGTACATGAACGCTTTCCATTGC
GCTCAGGCCATGGATTTTCAGCTAAGGCATTCTTGTAATTTCAAGCATTT
CTTGGGATCGATTTCTCTTGGCTTGTGTCCATGGCTGAACAACCCGGCAG
TTGCCTCTTCCTTCCCGGTCGAACCTGCTCAGAAGAGTGAGAACAATCGC
AACGGAACTGATTATCCGTGGACACGAGCAAGGCACACCGCATACCAAAC
CCAACGAAGCACTGCATGTTTGCAGGCTCACTTCGTATTGCGTGTTCCTC
TTCAGGAGCGCGCTAGATGTATCGAAGCTGTGGATCAGCCGCCGGATGCT
TGTCGCAGAAACCACGCTTTTGAGGGCCTACGGAGGAGTGGGTCCGACCG
TGAGAGCCCAAGACGCGATAAGGCAGGGTCGCAGGGTTCGTCTGAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig145:6787..9136-

>mRNA_H-canaliculatus_F_contig145.3484.1 ID=mRNA_H-canaliculatus_F_contig145.3484.1|Name=mRNA_H-canaliculatus_F_contig145.3484.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1470bp|location=Sequence derived from alignment at H-canaliculatus_F_contig145:6787..9136- (Hapterophycus canaliculatus Oshoro5f female)
ATGCACGTCGCCAGCCCAGGGCTCCCCGAAGCGGCTCTCCGCCATCTGTT
CTACCAGGCGACCATGAGGGCACCACAGCGGTCTTCCTCCGCTCGGACTG
GAGGAAGGGGGGTTGACACCGCCGCCGATATCCCTCTCCCTGCCACAACC
ACGAACACCACCGTCACGAATGCTTCTCGAAGCCGCTCGTCAAGCAAGGC
CGCAGACAGCAGCGCCGGGAGGAGTGGTGCCGGAGCTGGAGACGGCGAGG
CACCTTCTGTGTCCAGGTTGGCGCGAGCCGTGGTGGAGTTTCCGCTAGCG
TGCCGGGGCTTGGCGCCCCTGGTCGCGTCCACGACGACCGACCTGGAGGC
GAGGGGCCTGCTCAAGCAAGTGGCGTACCAGGCGAAGGAGGCGCTGGGCG
AGACCGAAAAGATGCACGTCGCCAGCCCAGGGCTCCCCGAAGCGGCTCTC
CGCCATCTGTTCTACCAGGCGACCATGAGGGCACCACAGCGGTCTTCCTC
CGCTCGGACTGGAGGAAGGGGGGTTGACACCGCCGCCGATATCCCTCTCC
CTGCCACAACCACGAACACCACCGTCACGAATGCTTCTCGAAGCCGCTCG
TCAAGCAAGGCCGCAGACAGCAGCGCCGGGAGGAGTGGTGCCGGAGCTGG
AGACGGCGAGGCACCTTCTGTGTCCAGGTTGGCGCGAGCCGTGGTGGAGT
TTCCGCTAGCGTGCCGGGGCTTGGCGCCCCTGGTCGCGTCCACGACGACC
GACCTGGAGGCGAGGGGCCTGCTCAAGCAAGTGGCGTACCAGGCGAAGGA
GGCGCTGGGCGAGACCGAAAAGATCGTGAATTCTATAAAAGAGGCTCAGG
ACGTGGCTACGGTCGACCGGTCAATCAGCGGCGGCGGAAGTGGAGGTGGA
GGTGGCGGCGGTGGCGGATTCGTCCCGGAGGCCGAAATCTCGGCCGTAGA
GGCGAGGGCCGCTCAGCTCAAAGCTTTCATGATCAACGCCGAGGCGTCAC
GATCGTGAATTCTATAAAAGAGGCTCAGGACGTGGCTACGGTCGACCGGT
CAATCAGCGGCGGCGGAAGTGGAGGTGGAGGTGGCGGCGGTGGCGGATTC
GTCCCGGAGGCCGAAATCTCGGCCGTAGAGGCGAGGGCCGCTCAGCTCAA
AGCTTTCATGATCAACGCCGAGGCGTCACGGAGCGCGCTAGATGTATCGA
AGCTGTGGATCAGCCGCCGGATGCTTGTCGCAGAAACCACGCTTTTGAGG
GCCTACGGAGGAGTGGGTCCGACCGTGAGAGCCCAAGACGCGATAAGGCA
GGGTCGCAGGGTTCGTCTGAGGTGAGAGCGCGCTAGATGTATCGAAGCTG
TGGATCAGCCGCCGGATGCTTGTCGCAGAAACCACGCTTTTGAGGGCCTA
CGGAGGAGTGGGTCCGACCGTGAGAGCCCAAGACGCGATAAGGCAGGGTC
GCAGGGTTCGTCTGAGGTGA
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