mRNA_H-canaliculatus_F_contig145.3493.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig145.3493.1
Unique NamemRNA_H-canaliculatus_F_contig145.3493.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig145.3493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig145contigH-canaliculatus_F_contig145:60402..61319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size918
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig145.3493.1prot_H-canaliculatus_F_contig145.3493.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig145 60420..60929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929201.4997613-UTR-H-canaliculatus_F_contig145:60401..604191622929201.4997613-UTR-H-canaliculatus_F_contig145:60401..60419Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig145 60402..60419 +
1696845715.4170997-UTR-H-canaliculatus_F_contig145:60401..604191696845715.4170997-UTR-H-canaliculatus_F_contig145:60401..60419Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig145 60402..60419 +
1622929201.5257318-UTR-H-canaliculatus_F_contig145:60929..613191622929201.5257318-UTR-H-canaliculatus_F_contig145:60929..61319Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig145 60930..61319 +
1696845715.4400055-UTR-H-canaliculatus_F_contig145:60929..613191696845715.4400055-UTR-H-canaliculatus_F_contig145:60929..61319Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig145 60930..61319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929201.511836-CDS-H-canaliculatus_F_contig145:60419..609291622929201.511836-CDS-H-canaliculatus_F_contig145:60419..60929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 60420..60929 +
1696845715.428428-CDS-H-canaliculatus_F_contig145:60419..609291696845715.428428-CDS-H-canaliculatus_F_contig145:60419..60929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig145 60420..60929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig145.3493.1

>prot_H-canaliculatus_F_contig145.3493.1 ID=prot_H-canaliculatus_F_contig145.3493.1|Name=mRNA_H-canaliculatus_F_contig145.3493.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=170bp
MQPVVSPTSTLAIKARFIIWRNIPLPPKKYCRGCRAESSFYEGRGRGGGV
QYPRVWQAQIHADGKESPCGTEHLIDNKVPAGRATNPSSFVRQGVRSNLS
GTNPVAAATKHPHDEHNGRVAVNRFRSGSRGARQQAADARLILVPKTTGG
GSPSLVLARATRQKTSACR*
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mRNA from alignment at H-canaliculatus_F_contig145:60402..61319+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig145.3493.1 ID=mRNA_H-canaliculatus_F_contig145.3493.1|Name=mRNA_H-canaliculatus_F_contig145.3493.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig145:60402..61319+ (Hapterophycus canaliculatus Oshoro5f female)
ATAAAAAGAGAACCAAGTATGCAACCCGTAGTAAGCCCCACATCCACCTT
GGCAATAAAGGCCCGCTTCATAATCTGGAGAAATATCCCCCTCCCCCCCA
AAAAATACTGCCGTGGTTGCCGCGCGGAGTCAAGTTTTTACGAGGGAAGG
GGGAGAGGGGGAGGGGTCCAATATCCTCGGGTCTGGCAAGCACAGATACA
CGCTGACGGTAAAGAGTCGCCATGCGGTACCGAACACCTCATCGATAATA
AAGTACCAGCTGGACGAGCGACGAACCCTTCATCGTTTGTTCGCCAAGGG
GTCCGTTCCAACTTGTCTGGGACAAACCCGGTAGCGGCGGCAACGAAGCA
CCCGCACGACGAGCACAATGGACGCGTCGCTGTGAACCGATTTCGAAGCG
GCTCTCGGGGGGCACGGCAGCAGGCAGCAGACGCACGGCTCATCCTCGTT
CCCAAAACAACAGGCGGGGGGTCTCCGAGTCTCGTCCTCGCAAGAGCCAC
GCGTCAGAAAACATCCGCCTGCAGATAGATGCACAGTACGGAGCTTCTTC
CCTGCACAGCCGCCAGAGCTTCCACGTCCAACGGTGGCACGAATCGGTGG
GGAGGGCGGAGAGGCACGAGGGGGGAAAGCTCGTGGATCCAAAAGTCTTA
TCGACAACCAAGAGAAGGGCTAGCGCTGGTCGCGCTGCTAGTTTTTTCAT
GCATTGCTCCTCTCTCTTCTCTCCCGTCCGGCCATCACCTTCCTTCCCTC
TTCCCCCAAACCGGCCAGAGGAACACCCACGCAAGAGTTTGCCGAGGGAA
CATCAAGCCCGCCCACCCGCTTAAGTAAAATCCGCTTGTGTGCACGCTTC
TCCCATTCTTCTTCCCGTGGCCGATGAAGCCGCAACACCATCCCGTGTAA
CGCCTCACCCCCCCCCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig145:60402..61319+

>mRNA_H-canaliculatus_F_contig145.3493.1 ID=mRNA_H-canaliculatus_F_contig145.3493.1|Name=mRNA_H-canaliculatus_F_contig145.3493.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1020bp|location=Sequence derived from alignment at H-canaliculatus_F_contig145:60402..61319+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAACCCGTAGTAAGCCCCACATCCACCTTGGCAATAAAGGCCCGCTT
CATAATCTGGAGAAATATCCCCCTCCCCCCCAAAAAATACTGCCGTGGTT
GCCGCGCGGAGTCAAGTTTTTACGAGGGAAGGGGGAGAGGGGGAGGGGTC
CAATATCCTCGGGTCTGGCAAGCACAGATACACGCTGACGGTAAAGAGTC
GCCATGCGGTACCGAACACCTCATCGATAATAAAGTACCAGCTGGACGAG
CGACGAACCCTTCATCGTTTGTTCGCCAAGGGGTCCGTTCCAACTTGTCT
GGGACAAACCCGGTAGCGGCGGCAACGAAGCACCCGCACGACGAGCACAA
TGGACGCGTCGCTGTGAACCGATTTCGAAGCGGCTCTCGGGGGGCACGGC
AGCAGGCAGCAGACGCACGGCTCATCCTCGTTCCCAAAACAACAGGCGGG
GGGTCTCCGAGTCTCGTCCTCGCAAGAGCCACGCGTCAGAAAACATCCGC
CTGCAGATAGATGCAACCCGTAGTAAGCCCCACATCCACCTTGGCAATAA
AGGCCCGCTTCATAATCTGGAGAAATATCCCCCTCCCCCCCAAAAAATAC
TGCCGTGGTTGCCGCGCGGAGTCAAGTTTTTACGAGGGAAGGGGGAGAGG
GGGAGGGGTCCAATATCCTCGGGTCTGGCAAGCACAGATACACGCTGACG
GTAAAGAGTCGCCATGCGGTACCGAACACCTCATCGATAATAAAGTACCA
GCTGGACGAGCGACGAACCCTTCATCGTTTGTTCGCCAAGGGGTCCGTTC
CAACTTGTCTGGGACAAACCCGGTAGCGGCGGCAACGAAGCACCCGCACG
ACGAGCACAATGGACGCGTCGCTGTGAACCGATTTCGAAGCGGCTCTCGG
GGGGCACGGCAGCAGGCAGCAGACGCACGGCTCATCCTCGTTCCCAAAAC
AACAGGCGGGGGGTCTCCGAGTCTCGTCCTCGCAAGAGCCACGCGTCAGA
AAACATCCGCCTGCAGATAG
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