mRNA_H-canaliculatus_F_contig14497.3483.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14497.3483.1
Unique NamemRNA_H-canaliculatus_F_contig14497.3483.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14497.3483.1 vs. uniprot
Match: D7G8R8_ECTSI (CNH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R8_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 7.300e-20
Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:   13 GAPGEGRRTEGRLAPHDIVSFLKTITPSESGREEAKRSAAVASPGSNDVTDGKA-PAIIPLTSGRALAVGYLQALIDAA 246
            GA  +GRR E  LAPHD+VSFLKTITPSESGR  A+ SAA  +  +    +G+A P  IP TSGRALAVGYLQ LIDAA
Sbjct:  695 GASADGRRAEAGLAPHDVVSFLKTITPSESGRANAETSAAATAAAAQPAKEGQAVPMTIPFTSGRALAVGYLQVLIDAA 773
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BLAST of mRNA_H-canaliculatus_F_contig14497.3483.1 vs. uniprot
Match: A0A6H5L3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y1_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.180e-18
Identity = 51/79 (64.56%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:   13 GAPGEGRRTEGRLAPHDIVSFLKTITPSESGREEAKRSAAVASPGSNDVTDGKA-PAIIPLTSGRALAVGYLQALIDAA 246
            GA  +GRR E  LAPHD+VSFLKTITPSESGR  A+ SAA          +G+A P  IP TSGRALAVGYLQ LIDAA
Sbjct:  214 GASADGRRAEASLAPHDVVSFLKTITPSESGRANAETSAAXXXXXXXXEKEGQAVPMTIPFTSGRALAVGYLQVLIDAA 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14497.3483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8R8_ECTSI7.300e-2064.56CNH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L3Y1_9PHAE1.180e-1864.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14497contigH-canaliculatus_F_contig14497:1624..2261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue4e-17
Seed eggNOG ortholog2880.D7G8R8
Preferred nameVPS39
KEGG koko:K17267,ko:K20183
KEGG Pathwayko04138,map04138
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005911,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008593,GO:0009056,GO:0009267,GO:0009506,GO:0009605,GO:0009705,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010008,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016237,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022406,GO:0022411,GO:0023051,GO:0023056,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030897,GO:0031090,GO:0031267,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032006,GO:0032008,GO:0032879,GO:0032889,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0034058,GO:0034613,GO:0034727,GO:0035542,GO:0042144,GO:0042594,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043933,GO:0044087,GO:0044088,GO:0044232,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045184,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0048475,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0055044,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071496,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097352,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0099022,GO:0099023,GO:0140056,GO:1902500,GO:1902531,GO:1902533,GO:1902774,GO:1903432,GO:1904263,GO:1990126,GO:1990816
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5240@1,KOG1078@2759,KOG2063@1,KOG2063@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929201.3564901-CDS-H-canaliculatus_F_contig14497:1623..18001622929201.3564901-CDS-H-canaliculatus_F_contig14497:1623..1800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14497 1624..1800 -
1696845715.346544-CDS-H-canaliculatus_F_contig14497:1623..18001696845715.346544-CDS-H-canaliculatus_F_contig14497:1623..1800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14497 1624..1800 -
1622929201.3674138-CDS-H-canaliculatus_F_contig14497:2162..22611622929201.3674138-CDS-H-canaliculatus_F_contig14497:2162..2261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14497 2163..2261 -
1696845715.363196-CDS-H-canaliculatus_F_contig14497:2162..22611696845715.363196-CDS-H-canaliculatus_F_contig14497:2162..2261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14497 2163..2261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14497.3483.1prot_H-canaliculatus_F_contig14497.3483.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14497 1624..2261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14497.3483.1

>prot_H-canaliculatus_F_contig14497.3483.1 ID=prot_H-canaliculatus_F_contig14497.3483.1|Name=mRNA_H-canaliculatus_F_contig14497.3483.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp
GAVAGAPGEGRRTEGRLAPHDIVSFLKTITPSESGREEAKRSAAVASPGS
NDVTDGKAPAIIPLTSGRALAVGYLQALIDAAGSGGGAGGGE
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mRNA from alignment at H-canaliculatus_F_contig14497:1624..2261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14497.3483.1 ID=mRNA_H-canaliculatus_F_contig14497.3483.1|Name=mRNA_H-canaliculatus_F_contig14497.3483.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14497:1624..2261- (Hapterophycus canaliculatus Oshoro5f female)
GGGGCGGTGGCGGGGGCGCCGGGAGAAGGCAGACGGACGGAGGGTCGACT
GGCCCCGCATGACATCGTGTCGTTTTTGAAGACCATCACGCCGAGTGAGG
TGCGCGATCCGGACAGAGGGGTTCCTGGAAACTGGACAACAGTAAAGCAT
TATCTGGCTCTGTGGAATCGAGGGTGGATATTGCAACGCATACCATGAGA
GCGGGCCGCTGGTCTCATATGCTTCTGGAGGGAAAGGCGGTGCTCCGTTG
GTTGCAAAGATGCTACAAGTGCAAGTACAGGTAGTGAGCGGAGGTTTGCC
GTCTTCCTATCGAGCGGAACGAGCGGAACGAGCGGAACGCACAGCCGCAA
GTGAAACACTGAATCGAATCTCGCTTGCCACTGGCCGTCACCACCACCAA
TCCTGTCGCGTGCATGACTTCGTGCGATCTCCGCTCCCCCCTTGTCCCCC
CTCCGAAACAGTCCGGTCGAGAGGAGGCAAAAAGGTCCGCGGCCGTCGCC
TCCCCCGGCAGCAACGATGTCACGGACGGAAAGGCACCAGCGATTATCCC
CCTGACGAGCGGGCGAGCCCTCGCCGTTGGGTATCTTCAAGCACTTATTG
ATGCTGCTGGAAGCGGTGGGGGCGCTGGAGGAGGGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14497:1624..2261-

>mRNA_H-canaliculatus_F_contig14497.3483.1 ID=mRNA_H-canaliculatus_F_contig14497.3483.1|Name=mRNA_H-canaliculatus_F_contig14497.3483.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14497:1624..2261- (Hapterophycus canaliculatus Oshoro5f female)
GGGGCGGTGGCGGGGGCGCCGGGAGAAGGCAGACGGACGGAGGGTCGACT
GGCCCCGCATGACATCGTGTCGTTTTTGAAGACCATCACGCCGAGTGAGG
GGGCGGTGGCGGGGGCGCCGGGAGAAGGCAGACGGACGGAGGGTCGACTG
GCCCCGCATGACATCGTGTCGTTTTTGAAGACCATCACGCCGAGTGAGTC
CGGTCGAGAGGAGGCAAAAAGGTCCGCGGCCGTCGCCTCCCCCGGCAGCA
ACGATGTCACGGACGGAAAGGCACCAGCGATTATCCCCCTGACGAGCGGG
CGAGCCCTCGCCGTTGGGTATCTTCAAGCACTTATTGATGCTGCTGGAAG
CGGTGGGGGCGCTGGAGGAGGGGAGTCCGGTCGAGAGGAGGCAAAAAGGT
CCGCGGCCGTCGCCTCCCCCGGCAGCAACGATGTCACGGACGGAAAGGCA
CCAGCGATTATCCCCCTGACGAGCGGGCGAGCCCTCGCCGTTGGGTATCT
TCAAGCACTTATTGATGCTGCTGGAAGCGGTGGGGGCGCTGGAGGAGGGG
AG
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