mRNA_H-canaliculatus_F_contig14490.3479.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14490.3479.1
Unique NamemRNA_H-canaliculatus_F_contig14490.3479.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14490.3479.1 vs. uniprot
Match: D7G4A8_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4A8_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 4.260e-98
Identity = 271/400 (67.75%), Postives = 291/400 (72.75%), Query Frame = 1 
Query:   70 GGGLTCYDVLAKGVGPVCLLLVVLSGRLRGEPSVAVKPAAAFALAALILEPLFSAYVLESGGPASAXXXXXXXXXXXXXXXXXXXGRGGGLARLLFLS--PKRVLGHIGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQLTLWAAVVLAYARISLRLSRGAPGRTVGGYMTALRTLAAKERGTGGLARIGQCGKGGRGWYGDGGXXXXXXXXXXXXXXXGAGTKPRAYGVLGSLYESLVAAGGWGGR-RVGSAATELSQHQALDDGPPFERGEVTVRNIFCFGLDAAITGRPPSASLNGNTSGXXXXXXXXXXXXXXXXXXX------------SSRPFYVTVSLGGVTAKTSPRQGFSPRFTEVFPLGADCPIRGAFITIAVID 1224
            G   TCYDVL KGVGP CLLLVVLS  +R EPSVAVKPAAA ALAAL+LEPLFSAYVL        XXXXXXXXXXXXX          GLARLL L   P RVLG +G     XXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQL LWAAVVLAYA +SLRLSRG PG+TVGGYM+ALR+LAAK+RGTGG  RI Q G G            XXXXXXXXXXXX      RA G+LGSLYE+L+         R+   A  L QHQ   DGPPFERGEVTVR+I+C GLDA+ITGRPPS   NGN+ G      XXXXXXXXXXXXX            SSRPFYVTVSLGG+TAKTS RQGFSP FTEVFPLG DCPIRGA++TIAV+D
Sbjct:   88 GCEFTCYDVLTKGVGPACLLLVVLSRSIRSEPSVAVKPAAAVALAALLLEPLFSAYVLGXXXXXXXXXXXXXXXXXXXXTRS-------GLARLLLLRDVPHRVLGQVG-----XXXXXXXXXXXXXXXXXXXXXXXXXXXLVARARWLTAGAQLVLWAAVVLAYANVSLRLSRGPPGKTVGGYMSALRSLAAKKRGTGGWVRIDQWGTG------------XXXXXXXXXXXXXXXXXARANGLLGSLYETLMGXXXXXXXGRICPEAMALCQHQKSYDGPPFERGEVTVRSIYCSGLDASITGRPPS---NGNSVGGVGVGGXXXXXXXXXXXXXXXXXXGGLIAGGSSRPFYVTVSLGGLTAKTSARQGFSPTFTEVFPLGCDCPIRGAYLTIAVVD 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14490.3479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4A8_ECTSI4.260e-9867.75C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14490contigH-canaliculatus_F_contig14490:597..2401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-02_001980.1
Exons2
Model size1230
Cds size1230
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929201.0153487-CDS-H-canaliculatus_F_contig14490:596..9531622929201.0153487-CDS-H-canaliculatus_F_contig14490:596..953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14490 597..953 -
1696845715.1935177-CDS-H-canaliculatus_F_contig14490:596..9531696845715.1935177-CDS-H-canaliculatus_F_contig14490:596..953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14490 597..953 -
1622929201.0279083-CDS-H-canaliculatus_F_contig14490:1528..24011622929201.0279083-CDS-H-canaliculatus_F_contig14490:1528..2401Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14490 1529..2401 -
1696845715.204232-CDS-H-canaliculatus_F_contig14490:1528..24011696845715.204232-CDS-H-canaliculatus_F_contig14490:1528..2401Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14490 1529..2401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14490.3479.1prot_H-canaliculatus_F_contig14490.3479.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14490 597..2401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14490.3479.1

>prot_H-canaliculatus_F_contig14490.3479.1 ID=prot_H-canaliculatus_F_contig14490.3479.1|Name=mRNA_H-canaliculatus_F_contig14490.3479.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=410bp
GVRTAPLRTLAPPSLRSNLGPASGGGLTCYDVLAKGVGPVCLLLVVLSGR
LRGEPSVAVKPAAAFALAALILEPLFSAYVLESGGPASATTAAASAAAAA
AAAATATTGRGGGLARLLFLSPKRVLGHIGGGGGRGKTDAAASAAAAAAA
AAAAAASASASALVARARWLTAGAQLTLWAAVVLAYARISLRLSRGAPGR
TVGGYMTALRTLAAKERGTGGLARIGQCGKGGRGWYGDGGGGVGGRDDGA
GGVGGGAGTKPRAYGVLGSLYESLVAAGGWGGRRVGSAATELSQHQALDD
GPPFERGEVTVRNIFCFGLDAAITGRPPSASLNGNTSGGGGFVGGADGGG
GGLIAGGSSRPFYVTVSLGGVTAKTSPRQGFSPRFTEVFPLGADCPIRGA
FITIAVIDR*
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mRNA from alignment at H-canaliculatus_F_contig14490:597..2401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14490.3479.1 ID=mRNA_H-canaliculatus_F_contig14490.3479.1|Name=mRNA_H-canaliculatus_F_contig14490.3479.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1805bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14490:597..2401- (Hapterophycus canaliculatus Oshoro5f female)
GGCGTCCGCACCGCACCCCTCCGCACCCTGGCCCCGCCGTCTCTACGCAG
CAACCTCGGTCCCGCGAGCGGCGGCGGCCTCACCTGCTACGACGTCCTCG
CCAAGGGCGTGGGGCCGGTGTGCCTCCTGCTCGTCGTGCTCAGCGGCAGG
CTGCGCGGCGAGCCGTCGGTCGCCGTCAAGCCCGCCGCGGCCTTCGCGCT
CGCCGCGCTCATCCTCGAGCCTCTGTTCAGCGCCTACGTCCTCGAAAGCG
GGGGCCCCGCAAGCGCAACAACGGCTGCTGCTTCTGCGGCGGCGGCGGCG
GCGGCGGCGGCGACGGCTACCACCGGACGGGGAGGCGGCCTCGCCCGATT
ACTCTTCCTGTCCCCGAAGCGCGTCCTGGGTCACATCGGTGGCGGCGGCG
GCCGAGGCAAAACAGACGCTGCCGCTTCCGCCGCCGCGGCCGCCGCGGCC
GCCGCCGCAGCCGCCGCGTCGGCTTCGGCCTCGGCGCTGGTGGCCCGGGC
GCGCTGGCTCACGGCCGGGGCGCAGCTCACCCTCTGGGCCGCCGTCGTCC
TCGCGTATGCCAGAATCTCTCTGCGGCTCTCTCGTGGCGCCCCCGGGAGG
ACCGTGGGGGGTTATATGACCGCTCTGCGAACCCTCGCCGCTAAGGAGCG
CGGCACTGGCGGGTTGGCGAGAATAGGCCAGTGTGGCAAGGGCGGGCGCG
GGTGGTACGGAGACGGAGGAGGAGGGGTAGGAGGTCGTGACGACGGCGCC
GGCGGCGTTGGTGGCGGGGCGGGGACGAAGCCACGAGCGTACGGCGTGCT
CGGATCCTTGTACGAGAGTCTGGTGGCGGCGGGGGGGTGGGGAGGCCGGC
GCGTCGGCTCCGCGGCAACGGAGGTAGGCAATTCTGCTGCGGGTGGGATC
GTGTAGCTGTCGGGCGATGGATCGATACAGGGTGTTCTTGGTACGCGAGG
CTTTTGTTCCCCCCGAGATTTTGTGTCCCGCCGGCGGGCATGCGGCATGC
GCGCCGGCCGACTATCGTTTTCCGTGGTTCTTGCTGTTGCCCGAGGATTG
TTCCAGAAATTTCCGGGGCTCTTCGAGAGAGAGAGTTGGAGGGCTATGTT
TCGAGCCGTCCACGTGCACAAAGCGTGTTTGCGTCGTTTTGTTTGCAGCG
GCGCAGGCTTACCGTTTCGAACATCCGGTCGCCTTCACGAGGTCGAAGAC
TTGCTGACCAATCCTTTTTTCAAGGCCGTTTTTGTGTTATTCTGGAAGAC
TGGGATGCAGTAGACGAGTACAATACTCCTCGCGCCACGCCATGAAGGAG
CACAGAACGAGCAGAATGCCTCCGCTTGCATACGAGCTTCCTCGTTGCAC
CTTGATGGCTCCGCCCCACGATAATTACTGCGCCAAAGTCCTCCCCGCAC
CAAAAACGAAAAAAAAAAACATTATCCACCACTCGTGCCGAACCGCAGCT
CAGCCAGCACCAGGCGCTCGATGACGGCCCTCCGTTCGAGAGGGGCGAGG
TCACCGTGCGCAACATCTTTTGCTTCGGACTGGACGCCGCCATAACCGGC
CGCCCCCCATCCGCCTCTTTGAACGGCAACACCAGTGGCGGGGGCGGTTT
TGTCGGCGGGGCCGACGGAGGGGGCGGAGGACTGATCGCCGGCGGGAGCT
CTCGGCCGTTCTACGTGACGGTGTCCCTGGGGGGGGTTACTGCCAAGACG
TCGCCGAGGCAGGGGTTCTCGCCGAGGTTCACCGAGGTTTTCCCGCTCGG
AGCCGATTGTCCGATCAGGGGGGCGTTCATCACCATCGCCGTGATCGACA
GGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14490:597..2401-

>mRNA_H-canaliculatus_F_contig14490.3479.1 ID=mRNA_H-canaliculatus_F_contig14490.3479.1|Name=mRNA_H-canaliculatus_F_contig14490.3479.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2460bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14490:597..2401- (Hapterophycus canaliculatus Oshoro5f female)
GGCGTCCGCACCGCACCCCTCCGCACCCTGGCCCCGCCGTCTCTACGCAG
CAACCTCGGTCCCGCGAGCGGCGGCGGCCTCACCTGCTACGACGTCCTCG
CCAAGGGCGTGGGGCCGGTGTGCCTCCTGCTCGTCGTGCTCAGCGGCAGG
CTGCGCGGCGAGCCGTCGGTCGCCGTCAAGCCCGCCGCGGCCTTCGCGCT
CGCCGCGCTCATCCTCGAGCCTCTGTTCAGCGCCTACGTCCTCGAAAGCG
GGGGCCCCGCAAGCGCAACAACGGCTGCTGCTTCTGCGGCGGCGGCGGCG
GCGGCGGCGGCGACGGCTACCACCGGACGGGGAGGCGGCCTCGCCCGATT
ACTCTTCCTGTCCCCGAAGCGCGTCCTGGGTCACATCGGTGGCGGCGGCG
GCCGAGGCAAAACAGACGCTGCCGCTTCCGCCGCCGCGGCCGCCGCGGCC
GCCGCCGCAGCCGCCGCGTCGGCTTCGGCCTCGGCGCTGGTGGCCCGGGC
GCGCTGGCTCACGGCCGGGGCGCAGCTCACCCTCTGGGCCGCCGTCGTCC
TCGCGTATGCCAGAATCTCTCTGCGGCTCTCTCGTGGCGCCCCCGGGAGG
ACCGTGGGGGGTTATATGACCGCTCTGCGAACCCTCGCCGCTAAGGAGCG
CGGCACTGGCGGGTTGGCGAGAATAGGCCAGTGTGGCAAGGGCGGGCGCG
GGTGGTACGGAGACGGAGGAGGAGGGGTAGGAGGTCGTGACGACGGCGCC
GGCGGCGTTGGTGGCGGGGCGGGGACGAAGCCACGAGCGTACGGCGTGCT
CGGATCCTTGTACGAGAGTCTGGTGGCGGCGGGGGGGTGGGGAGGCCGGC
GCGTCGGCTCCGCGGCAACGGAGGGCGTCCGCACCGCACCCCTCCGCACC
CTGGCCCCGCCGTCTCTACGCAGCAACCTCGGTCCCGCGAGCGGCGGCGG
CCTCACCTGCTACGACGTCCTCGCCAAGGGCGTGGGGCCGGTGTGCCTCC
TGCTCGTCGTGCTCAGCGGCAGGCTGCGCGGCGAGCCGTCGGTCGCCGTC
AAGCCCGCCGCGGCCTTCGCGCTCGCCGCGCTCATCCTCGAGCCTCTGTT
CAGCGCCTACGTCCTCGAAAGCGGGGGCCCCGCAAGCGCAACAACGGCTG
CTGCTTCTGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCTACCACCGGA
CGGGGAGGCGGCCTCGCCCGATTACTCTTCCTGTCCCCGAAGCGCGTCCT
GGGTCACATCGGTGGCGGCGGCGGCCGAGGCAAAACAGACGCTGCCGCTT
CCGCCGCCGCGGCCGCCGCGGCCGCCGCCGCAGCCGCCGCGTCGGCTTCG
GCCTCGGCGCTGGTGGCCCGGGCGCGCTGGCTCACGGCCGGGGCGCAGCT
CACCCTCTGGGCCGCCGTCGTCCTCGCGTATGCCAGAATCTCTCTGCGGC
TCTCTCGTGGCGCCCCCGGGAGGACCGTGGGGGGTTATATGACCGCTCTG
CGAACCCTCGCCGCTAAGGAGCGCGGCACTGGCGGGTTGGCGAGAATAGG
CCAGTGTGGCAAGGGCGGGCGCGGGTGGTACGGAGACGGAGGAGGAGGGG
TAGGAGGTCGTGACGACGGCGCCGGCGGCGTTGGTGGCGGGGCGGGGACG
AAGCCACGAGCGTACGGCGTGCTCGGATCCTTGTACGAGAGTCTGGTGGC
GGCGGGGGGGTGGGGAGGCCGGCGCGTCGGCTCCGCGGCAACGGAGCTCA
GCCAGCACCAGGCGCTCGATGACGGCCCTCCGTTCGAGAGGGGCGAGGTC
ACCGTGCGCAACATCTTTTGCTTCGGACTGGACGCCGCCATAACCGGCCG
CCCCCCATCCGCCTCTTTGAACGGCAACACCAGTGGCGGGGGCGGTTTTG
TCGGCGGGGCCGACGGAGGGGGCGGAGGACTGATCGCCGGCGGGAGCTCT
CGGCCGTTCTACGTGACGGTGTCCCTGGGGGGGGTTACTGCCAAGACGTC
GCCGAGGCAGGGGTTCTCGCCGAGGTTCACCGAGGTTTTCCCGCTCGGAG
CCGATTGTCCGATCAGGGGGGCGTTCATCACCATCGCCGTGATCGACAGG
TGACTCAGCCAGCACCAGGCGCTCGATGACGGCCCTCCGTTCGAGAGGGG
CGAGGTCACCGTGCGCAACATCTTTTGCTTCGGACTGGACGCCGCCATAA
CCGGCCGCCCCCCATCCGCCTCTTTGAACGGCAACACCAGTGGCGGGGGC
GGTTTTGTCGGCGGGGCCGACGGAGGGGGCGGAGGACTGATCGCCGGCGG
GAGCTCTCGGCCGTTCTACGTGACGGTGTCCCTGGGGGGGGTTACTGCCA
AGACGTCGCCGAGGCAGGGGTTCTCGCCGAGGTTCACCGAGGTTTTCCCG
CTCGGAGCCGATTGTCCGATCAGGGGGGCGTTCATCACCATCGCCGTGAT
CGACAGGTGA
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