mRNA_H-canaliculatus_F_contig1449.3475.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1449.3475.1
Unique NamemRNA_H-canaliculatus_F_contig1449.3475.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1449.3475.1 vs. uniprot
Match: A0A6H5KQJ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ6_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.970e-23
Identity = 117/345 (33.91%), Postives = 156/345 (45.22%), Query Frame = 1 
Query:    4 LRRTKGQERVEKSLRVWHTLLAKTSGQ-VQDMILSTGSPQQGWRAFVSQHRENFDREGERLEREWNELRQGDDEDVMDYLRRGQTLQMNMNSRLGPSGHGRKSEDVVCRHIARRLNSSFARAREYLLFYHGLSRKHLEFTISQAQHEHRQSGREGDGREETRHALYTSGMGRGATSHGRGQDDGGGRNAGWXXXXXXXXXXXXXXXXXXXXXXXDRNPNQEAPM-FCRRHGQNDTHNTENCVALRREF----EEFLDFREQTGDHRFAYEGRKTGRDIDGFV------RRPDFMQGRP-REQPFPQRSDGNWGRGLPPRQAPGRGRGPAS-----FTGRYPGGRG 984
            LR T G+ERV++  ++W  +LAK + Q VQ  IL+  SPQ G+R F+ Q+ ++  +E + L+  WN + Q   E +MDY  R   L M    RL   G  R  E  +CRHI R     F + ++ LLF   LSR  ++  +   +HE R   R+G+ +EE RHAL  +G+GRG    G G+    G   G                            NQ+ P  FC+ HG N TH T  C  LR EF     EF            AY   +  R+  GFV      +    M G P R+QP+       W RG  P   PG  RGP S       GR  GGRG
Sbjct:   18 LRSTYGEERVKQPRKIWTFMLAKITAQPVQAQILAAESPQAGYRVFIDQYSQDKSQERQNLDDAWNVIGQRQGESLMDYYGRAVALWM----RLRSYGDYR-DEKSMCRHIVRGFLPRFEKTKDRLLFDTMLSRATMQEMLRMEEHELRYERRDGERKEEMRHALVAAGVGRGG---GAGKPAAAGSEQGGHRPQQPQGSLPL------------HQQNQQQPSHFCQLHGPNSTHETSECEKLRNEFIAHYNEFC-----------AYMSGR--REAQGFVFPRGGAQHSGRMVGGPSRQQPYQNEQGAGWSRGHSP-ALPGPPRGPGSGAGGQLQGRNSGGRG 328
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BLAST of mRNA_H-canaliculatus_F_contig1449.3475.1 vs. uniprot
Match: A0A6H5L9J1_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 9.040e-19
Identity = 67/173 (38.73%), Postives = 99/173 (57.23%), Query Frame = 1 
Query:    4 LRRTKGQERVEKSLRVWHTLLAKTSGQ-VQDMILSTGSPQQGWRAFVSQHRENFDREGERLEREWNELRQGDDEDVMDYLRRGQTLQMNMNSRLGPSGHGRKSEDVVCRHIARRLNSSFARAREYLLFYHGLSRKHLEFTISQAQHEHRQSGREGDGREETRHALYTSGMGRG 519
            LR T G+ERV++S ++W  +LAK + Q  Q  IL++ SPQ G+R F+ Q+ ++  +E + L+  WN + Q   E +MDY  R   L M    RL   G  R  E  +CRHI R     F + ++ LLF   LSR  ++  +   +HE R   R+G+ +EE RHAL  +G+GRG
Sbjct:  116 LRSTYGEERVKQSRKIWTFMLAKITAQPAQAQILASESPQAGYRVFLEQYSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVALWM----RLRSYGDNR-DEKSMCRHIVRGFLPRFEKTKDRLLFDTMLSRATMQEMLRMEEHELRYERRDGERKEEMRHALVAAGVGRG 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1449.3475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQJ6_9PHAE1.970e-2333.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L9J1_9PHAE9.040e-1938.73Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1449contigH-canaliculatus_F_contig1449:20340..21905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1568
Cds size1566
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.4263568-CDS-H-canaliculatus_F_contig1449:20339..219051622929199.4263568-CDS-H-canaliculatus_F_contig1449:20339..21905Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1449 20340..21905 +
1696845714.905414-CDS-H-canaliculatus_F_contig1449:20339..219051696845714.905414-CDS-H-canaliculatus_F_contig1449:20339..21905Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1449 20340..21905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1449.3475.1prot_H-canaliculatus_F_contig1449.3475.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1449 20340..21905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1449.3475.1

>prot_H-canaliculatus_F_contig1449.3475.1 ID=prot_H-canaliculatus_F_contig1449.3475.1|Name=mRNA_H-canaliculatus_F_contig1449.3475.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=522bp
MLRRTKGQERVEKSLRVWHTLLAKTSGQVQDMILSTGSPQQGWRAFVSQH
RENFDREGERLEREWNELRQGDDEDVMDYLRRGQTLQMNMNSRLGPSGHG
RKSEDVVCRHIARRLNSSFARAREYLLFYHGLSRKHLEFTISQAQHEHRQ
SGREGDGREETRHALYTSGMGRGATSHGRGQDDGGGRNAGWSDGGARAAG
WSGGGARAAGRSGGDRNPNQEAPMFCRRHGQNDTHNTENCVALRREFEEF
LDFREQTGDHRFAYEGRKTGRDIDGFVRRPDFMQGRPREQPFPQRSDGNW
GRGLPPRQAPGRGRGPASFTGRYPGGRGFADGRPSSSGGRGAGRGGNFRS
NYPPRSAATNGPPRYANYAGPNDGYGYDAYEGDRWGTSNWQYDEEQQYYP
ETYGHGLAAQEGDFREGYGGETGGYGPGYFSAGGEVFPPEPAGHGDGTNG
AYAGYSPAGPDAFQPMRYQEANGAPQQQQQPQYGVQQSASAASSSLSSSS
PSSGSSSSQGPLRSCVALNVSR
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mRNA from alignment at H-canaliculatus_F_contig1449:20340..21905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1449.3475.1 ID=mRNA_H-canaliculatus_F_contig1449.3475.1|Name=mRNA_H-canaliculatus_F_contig1449.3475.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1566bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1449:20340..21905+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCAGAAGAACAAAAGGGCAAGAACGAGTTGAGAAGTCATTGCGTGT
CTGGCATACACTTCTTGCGAAAACTTCTGGACAGGTTCAAGACATGATTC
TCTCGACTGGTAGTCCTCAGCAAGGATGGAGGGCTTTTGTCTCCCAGCAC
AGGGAAAACTTCGACCGGGAAGGAGAGAGATTGGAGAGAGAATGGAATGA
GTTAAGGCAGGGAGATGACGAGGATGTGATGGATTACCTGCGGAGGGGGC
AAACCCTTCAGATGAACATGAATTCTCGTTTGGGTCCTAGTGGCCATGGT
CGAAAGAGCGAAGATGTTGTGTGTCGCCACATCGCCCGACGTCTAAACTC
TTCCTTTGCCCGCGCTCGGGAATATCTGCTTTTTTATCATGGCCTTTCGA
GGAAACATCTGGAATTTACCATTTCACAGGCCCAACACGAGCATCGGCAG
TCCGGGAGAGAAGGCGACGGGAGAGAGGAGACGAGGCACGCGCTCTACAC
TTCCGGCATGGGTCGGGGTGCAACATCCCACGGCAGGGGCCAGGATGATG
GCGGAGGACGCAACGCTGGATGGAGCGATGGCGGGGCACGCGCTGCAGGA
TGGAGTGGGGGTGGAGCACGCGCCGCTGGACGGAGCGGCGGAGATCGTAA
TCCCAATCAAGAAGCGCCGATGTTCTGCAGACGGCATGGACAGAACGATA
CCCACAACACCGAGAACTGCGTGGCCCTTCGCAGGGAGTTCGAGGAGTTC
TTGGACTTCCGCGAGCAGACAGGAGACCATCGATTTGCGTACGAAGGCCG
AAAGACGGGGCGGGATATCGACGGTTTTGTTCGCCGCCCGGACTTCATGC
AAGGCCGGCCCAGGGAGCAGCCTTTTCCCCAGCGTTCGGACGGGAATTGG
GGCCGTGGTCTCCCGCCAAGACAGGCACCTGGGCGAGGACGCGGGCCTGC
GAGCTTCACGGGTCGTTACCCGGGGGGAAGAGGGTTCGCGGACGGGCGTC
CTTCCTCCTCCGGCGGCAGGGGGGCGGGCAGAGGCGGGAATTTCCGCTCT
AATTATCCGCCTCGCTCTGCCGCCACAAACGGGCCCCCGCGTTACGCAAA
CTACGCCGGGCCCAACGACGGCTACGGGTACGATGCCTATGAGGGAGACC
GCTGGGGTACCTCGAACTGGCAGTACGACGAGGAGCAGCAGTACTATCCG
GAGACGTACGGGCACGGGCTCGCAGCTCAGGAGGGGGATTTTCGCGAAGG
CTACGGAGGCGAGACGGGAGGATACGGCCCAGGCTATTTCTCCGCCGGCG
GGGAAGTTTTCCCGCCGGAGCCCGCCGGTCATGGCGATGGCACAAACGGC
GCTTACGCAGGCTACTCCCCGGCGGGGCCAGACGCCTTTCAGCCGATGCG
GTACCAGGAGGCGAACGGTGCGCCACAGCAGCAGCAGCAGCCGCAGTATG
GAGTTCAGCAGTCCGCCAGCGCCGCCTCGTCCTCTCTCTCTTCGTCGTCT
CCCTCTTCCGGATCGTCGTCGTCTCAAGGGCCTCTTCGTAGCTGCGTGGC
ATTGAATGTGTCTCGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1449:20340..21905+

>mRNA_H-canaliculatus_F_contig1449.3475.1 ID=mRNA_H-canaliculatus_F_contig1449.3475.1|Name=mRNA_H-canaliculatus_F_contig1449.3475.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3132bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1449:20340..21905+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCAGAAGAACAAAAGGGCAAGAACGAGTTGAGAAGTCATTGCGTGT
CTGGCATACACTTCTTGCGAAAACTTCTGGACAGGTTCAAGACATGATTC
TCTCGACTGGTAGTCCTCAGCAAGGATGGAGGGCTTTTGTCTCCCAGCAC
AGGGAAAACTTCGACCGGGAAGGAGAGAGATTGGAGAGAGAATGGAATGA
GTTAAGGCAGGGAGATGACGAGGATGTGATGGATTACCTGCGGAGGGGGC
AAACCCTTCAGATGAACATGAATTCTCGTTTGGGTCCTAGTGGCCATGGT
CGAAAGAGCGAAGATGTTGTGTGTCGCCACATCGCCCGACGTCTAAACTC
TTCCTTTGCCCGCGCTCGGGAATATCTGCTTTTTTATCATGGCCTTTCGA
GGAAACATCTGGAATTTACCATTTCACAGGCCCAACACGAGCATCGGCAG
TCCGGGAGAGAAGGCGACGGGAGAGAGGAGACGAGGCACGCGCTCTACAC
TTCCGGCATGGGTCGGGGTGCAACATCCCACGGCAGGGGCCAGGATGATG
GCGGAGGACGCAACGCTGGATGGAGCGATGGCGGGGCACGCGCTGCAGGA
TGGAGTGGGGGTGGAGCACGCGCCGCTGGACGGAGCGGCGGAGATCGTAA
TCCCAATCAAGAAGCGCCGATGTTCTGCAGACGGCATGGACAGAACGATA
CCCACAACACCGAGAACTGCGTGGCCCTTCGCAGGGAGTTCGAGGAGTTC
TTGGACTTCCGCGAGCAGACAGGAGACCATCGATTTGCGTACGAAGGCCG
AAAGACGGGGCGGGATATCGACGGTTTTGTTCGCCGCCCGGACTTCATGC
AAGGCCGGCCCAGGGAGCAGCCTTTTCCCCAGCGTTCGGACGGGAATTGG
GGCCGTGGTCTCCCGCCAAGACAGGCACCTGGGCGAGGACGCGGGCCTGC
GAGCTTCACGGGTCGTTACCCGGGGGGAAGAGGGTTCGCGGACGGGCGTC
CTTCCTCCTCCGGCGGCAGGGGGGCGGGCAGAGGCGGGAATTTCCGCTCT
AATTATCCGCCTCGCTCTGCCGCCACAAACGGGCCCCCGCGTTACGCAAA
CTACGCCGGGCCCAACGACGGCTACGGGTACGATGCCTATGAGGGAGACC
GCTGGGGTACCTCGAACTGGCAGTACGACGAGGAGCAGCAGTACTATCCG
GAGACGTACGGGCACGGGCTCGCAGCTCAGGAGGGGGATTTTCGCGAAGG
CTACGGAGGCGAGACGGGAGGATACGGCCCAGGCTATTTCTCCGCCGGCG
GGGAAGTTTTCCCGCCGGAGCCCGCCGGTCATGGCGATGGCACAAACGGC
GCTTACGCAGGCTACTCCCCGGCGGGGCCAGACGCCTTTCAGCCGATGCG
GTACCAGGAGGCGAACGGTGCGCCACAGCAGCAGCAGCAGCCGCAGTATG
GAGTTCAGCAGTCCGCCAGCGCCGCCTCGTCCTCTCTCTCTTCGTCGTCT
CCCTCTTCCGGATCGTCGTCGTCTCAAGGGCCTCTTCGTAGCTGCGTGGC
ATTGAATGTGTCTCGAATGCTCAGAAGAACAAAAGGGCAAGAACGAGTTG
AGAAGTCATTGCGTGTCTGGCATACACTTCTTGCGAAAACTTCTGGACAG
GTTCAAGACATGATTCTCTCGACTGGTAGTCCTCAGCAAGGATGGAGGGC
TTTTGTCTCCCAGCACAGGGAAAACTTCGACCGGGAAGGAGAGAGATTGG
AGAGAGAATGGAATGAGTTAAGGCAGGGAGATGACGAGGATGTGATGGAT
TACCTGCGGAGGGGGCAAACCCTTCAGATGAACATGAATTCTCGTTTGGG
TCCTAGTGGCCATGGTCGAAAGAGCGAAGATGTTGTGTGTCGCCACATCG
CCCGACGTCTAAACTCTTCCTTTGCCCGCGCTCGGGAATATCTGCTTTTT
TATCATGGCCTTTCGAGGAAACATCTGGAATTTACCATTTCACAGGCCCA
ACACGAGCATCGGCAGTCCGGGAGAGAAGGCGACGGGAGAGAGGAGACGA
GGCACGCGCTCTACACTTCCGGCATGGGTCGGGGTGCAACATCCCACGGC
AGGGGCCAGGATGATGGCGGAGGACGCAACGCTGGATGGAGCGATGGCGG
GGCACGCGCTGCAGGATGGAGTGGGGGTGGAGCACGCGCCGCTGGACGGA
GCGGCGGAGATCGTAATCCCAATCAAGAAGCGCCGATGTTCTGCAGACGG
CATGGACAGAACGATACCCACAACACCGAGAACTGCGTGGCCCTTCGCAG
GGAGTTCGAGGAGTTCTTGGACTTCCGCGAGCAGACAGGAGACCATCGAT
TTGCGTACGAAGGCCGAAAGACGGGGCGGGATATCGACGGTTTTGTTCGC
CGCCCGGACTTCATGCAAGGCCGGCCCAGGGAGCAGCCTTTTCCCCAGCG
TTCGGACGGGAATTGGGGCCGTGGTCTCCCGCCAAGACAGGCACCTGGGC
GAGGACGCGGGCCTGCGAGCTTCACGGGTCGTTACCCGGGGGGAAGAGGG
TTCGCGGACGGGCGTCCTTCCTCCTCCGGCGGCAGGGGGGCGGGCAGAGG
CGGGAATTTCCGCTCTAATTATCCGCCTCGCTCTGCCGCCACAAACGGGC
CCCCGCGTTACGCAAACTACGCCGGGCCCAACGACGGCTACGGGTACGAT
GCCTATGAGGGAGACCGCTGGGGTACCTCGAACTGGCAGTACGACGAGGA
GCAGCAGTACTATCCGGAGACGTACGGGCACGGGCTCGCAGCTCAGGAGG
GGGATTTTCGCGAAGGCTACGGAGGCGAGACGGGAGGATACGGCCCAGGC
TATTTCTCCGCCGGCGGGGAAGTTTTCCCGCCGGAGCCCGCCGGTCATGG
CGATGGCACAAACGGCGCTTACGCAGGCTACTCCCCGGCGGGGCCAGACG
CCTTTCAGCCGATGCGGTACCAGGAGGCGAACGGTGCGCCACAGCAGCAG
CAGCAGCCGCAGTATGGAGTTCAGCAGTCCGCCAGCGCCGCCTCGTCCTC
TCTCTCTTCGTCGTCTCCCTCTTCCGGATCGTCGTCGTCTCAAGGGCCTC
TTCGTAGCTGCGTGGCATTGAATGTGTCTCGA
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