mRNA_H-canaliculatus_F_contig1447.3468.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1447.3468.1
Unique NamemRNA_H-canaliculatus_F_contig1447.3468.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1447.3468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1447contigH-canaliculatus_F_contig1447:21658..22048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size391
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.3207707-CDS-H-canaliculatus_F_contig1447:21657..219781622929198.3207707-CDS-H-canaliculatus_F_contig1447:21657..21978Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1447 21658..21978 +
1696845714.327503-CDS-H-canaliculatus_F_contig1447:21657..219781696845714.327503-CDS-H-canaliculatus_F_contig1447:21657..21978Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1447 21658..21978 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.331843-UTR-H-canaliculatus_F_contig1447:21978..220481622929198.331843-UTR-H-canaliculatus_F_contig1447:21978..22048Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1447 21979..22048 +
1696845714.3370914-UTR-H-canaliculatus_F_contig1447:21978..220481696845714.3370914-UTR-H-canaliculatus_F_contig1447:21978..22048Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1447 21979..22048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1447.3468.1prot_H-canaliculatus_F_contig1447.3468.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1447 21658..21978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1447.3468.1

>prot_H-canaliculatus_F_contig1447.3468.1 ID=prot_H-canaliculatus_F_contig1447.3468.1|Name=mRNA_H-canaliculatus_F_contig1447.3468.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MTGTAILSREKPGRHGGFTRDPQLNLNVPHAERQAGSPPLTANAATQARH
GLHQTQLKSLLHADCVHHKLSYDVPHNVKYLARYPKPNEIIFTGVIHQTH
NSRGKH*
back to top

mRNA from alignment at H-canaliculatus_F_contig1447:21658..22048+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1447.3468.1 ID=mRNA_H-canaliculatus_F_contig1447.3468.1|Name=mRNA_H-canaliculatus_F_contig1447.3468.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=391bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1447:21658..22048+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACAGGGACGGCAATTTTGTCGAGGGAGAAACCCGGACGCCACGGGGG
TTTTACGCGCGATCCACAGCTAAACCTTAACGTCCCGCATGCAGAGAGGC
AGGCAGGCAGCCCCCCCCTTACCGCCAACGCTGCTACACAAGCACGGCAC
GGTCTTCACCAGACGCAGTTGAAGTCTCTCTTGCACGCAGATTGCGTTCA
TCACAAATTATCGTACGACGTACCGCACAACGTCAAATATCTGGCCAGAT
ACCCGAAGCCAAACGAAATAATCTTCACGGGGGTAATCCATCAAACACAC
AACTCTCGAGGCAAGCACTAGAAGCACCAACGACACCTGCACCATCACCT
GCGACACCGACCCGTCGACTCTCTCCCTTACCTCGGGCAAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1447:21658..22048+

>mRNA_H-canaliculatus_F_contig1447.3468.1 ID=mRNA_H-canaliculatus_F_contig1447.3468.1|Name=mRNA_H-canaliculatus_F_contig1447.3468.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1447:21658..22048+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACAGGGACGGCAATTTTGTCGAGGGAGAAACCCGGACGCCACGGGGG
TTTTACGCGCGATCCACAGCTAAACCTTAACGTCCCGCATGCAGAGAGGC
AGGCAGGCAGCCCCCCCCTTACCGCCAACGCTGCTACACAAGCACGGCAC
GGTCTTCACCAGACGCAGTTGAAGTCTCTCTTGCACGCAGATTGCGTTCA
TCACAAATTATCGTACGACGTACCGCACAACGTCAAATATCTGGCCAGAT
ACCCGAAGCCAAACGAAATAATCTTCACGGGGGTAATCCATCAAACACAC
AACTCTCGAGGCAAGCACTAGATGACAGGGACGGCAATTTTGTCGAGGGA
GAAACCCGGACGCCACGGGGGTTTTACGCGCGATCCACAGCTAAACCTTA
ACGTCCCGCATGCAGAGAGGCAGGCAGGCAGCCCCCCCCTTACCGCCAAC
GCTGCTACACAAGCACGGCACGGTCTTCACCAGACGCAGTTGAAGTCTCT
CTTGCACGCAGATTGCGTTCATCACAAATTATCGTACGACGTACCGCACA
ACGTCAAATATCTGGCCAGATACCCGAAGCCAAACGAAATAATCTTCACG
GGGGTAATCCATCAAACACACAACTCTCGAGGCAAGCACTAG
back to top