mRNA_H-canaliculatus_F_contig1445.3460.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1445.3460.1
Unique NamemRNA_H-canaliculatus_F_contig1445.3460.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1445.3460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1445contigH-canaliculatus_F_contig1445:2845..4190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size504
Cds size504
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1445.3460.1prot_H-canaliculatus_F_contig1445.3460.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1445 2845..4190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.5337694-CDS-H-canaliculatus_F_contig1445:2844..28861622929197.5337694-CDS-H-canaliculatus_F_contig1445:2844..2886Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1445 2845..2886 +
1696845713.9327517-CDS-H-canaliculatus_F_contig1445:2844..28861696845713.9327517-CDS-H-canaliculatus_F_contig1445:2844..2886Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1445 2845..2886 +
1622929197.5510368-CDS-H-canaliculatus_F_contig1445:3298..35351622929197.5510368-CDS-H-canaliculatus_F_contig1445:3298..3535Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1445 3299..3535 +
1696845713.9421225-CDS-H-canaliculatus_F_contig1445:3298..35351696845713.9421225-CDS-H-canaliculatus_F_contig1445:3298..3535Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1445 3299..3535 +
1622929197.565724-CDS-H-canaliculatus_F_contig1445:3965..41901622929197.565724-CDS-H-canaliculatus_F_contig1445:3965..4190Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1445 3966..4190 +
1696845713.9506853-CDS-H-canaliculatus_F_contig1445:3965..41901696845713.9506853-CDS-H-canaliculatus_F_contig1445:3965..4190Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1445 3966..4190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1445.3460.1

>prot_H-canaliculatus_F_contig1445.3460.1 ID=prot_H-canaliculatus_F_contig1445.3460.1|Name=mRNA_H-canaliculatus_F_contig1445.3460.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=168bp
EPVDDDTLTDAPIDDNADGECEAPAEAPSEIPTGNDSVANIPTGGEDTRE
AEELAPAAPEAVPAVADDLSEQGEWTEIVAPVEDDAVDDAPTDNVTGAGD
NAPIGAPSEPAAVAEVPVVDERAGQAEQHSSVTWEATSEVADEASETAEM
ARVMAAVKDDAVAEVPIE
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mRNA from alignment at H-canaliculatus_F_contig1445:2845..4190+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1445.3460.1 ID=mRNA_H-canaliculatus_F_contig1445.3460.1|Name=mRNA_H-canaliculatus_F_contig1445.3460.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1346bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1445:2845..4190+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCCGGTGGATGATGATACCCTCACCGATGCACCGATTGATGTGAGCCC
GATTCTTGTTCGCTTCGATTCGCATTGCCACGCTGGTCGGTTACACAGAC
TTGCCTCGCGAATGTTTCCTGGCACGCAAGCTTTCTGAGTTCACACGAGT
CCGGGTCGCGGGGCATGTGTCTAGTGCACCTGCGGTGTGTCTGGCGGAGT
CTTCGAGTCGTCATCCTGACGCCAGTTGCAGCCATGGTCGTGGAGTTCCA
AGTTCCCACGGGTTGTACGTTCTTTGTTCGTGTCAAAAAGGTTTTGGAAG
CCGAGGGTGTCTATATTTTCGAGGTAATTCAAAGTGCACAGCTGTTTGTC
CCCGCCAATTAAGCCGCTGGCGTTCATCGCTTGTTTCGTACACCACCCCA
CGGAGCCTATTTTCTGCTTCAAGCTATCCTACACATGACTCGTTCGTTTC
ACAGGACAACGCCGACGGTGAATGTGAAGCGCCTGCCGAAGCTCCCTCAG
AGATTCCCACTGGAAATGACAGTGTGGCGAATATTCCGACGGGGGGAGAA
GACACGAGGGAGGCCGAGGAGCTCGCTCCTGCCGCACCAGAGGCCGTTCC
GGCCGTTGCGGACGATCTCTCCGAGCAGGGAGAATGGACGGAGATCGTGG
CGCCGGTGGAAGATGATGCCGTCGACGACGCACCAACCGATGTGAGGTTT
GCTTATGTGTCCAATGTGTCGCGTTGCGGTCGGATGTCCGTCGGATTTCG
ATCAGCCTCTCCCCTTCATGAGAATCGATGCCCGGGTTTTGGGTGAGAAA
AGTGAAGCTTTCAGAATTGTGTCGGATCTTCCCTTTGATCGTGTCCGACA
CCAATATGCTTTCGAGTTCTAGAAAGTGCCGCAGCCTCGTCCCGCCCCGA
AGAGAAGCCAATTGCTTCTGGTACCTGCTGCATTTTTTTCCCGCCCCCAA
CCCGTCTTTTGAAAGAAAACTTAACAACACCGTTATAACACCTCCTGAGG
TACGTCGTGTGAGGCGTAGCCCGAGGCCTCTGTTGAGTTCAAAACAGCAG
TGAGGGTTCATTGATGGGGAAAAGCATGAACAGAACAGAGCTTGTCTTTT
CTCGAACTCTCCATTCCACAGAATGTCACCGGAGCTGGAGACAACGCGCC
GATCGGCGCTCCTTCAGAGCCTGCTGCTGTGGCGGAAGTGCCGGTGGTGG
ACGAGCGAGCGGGGCAGGCCGAGCAGCACTCCTCTGTCACATGGGAAGCG
ACGTCGGAAGTCGCAGACGAGGCGTCCGAGACGGCAGAAATGGCGAGGGT
CATGGCGGCGGTGAAAGATGATGCTGTCGCCGAAGTGCCGATCGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1445:2845..4190+

>mRNA_H-canaliculatus_F_contig1445.3460.1 ID=mRNA_H-canaliculatus_F_contig1445.3460.1|Name=mRNA_H-canaliculatus_F_contig1445.3460.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1008bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1445:2845..4190+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCCGGTGGATGATGATACCCTCACCGATGCACCGATTGATGAGCCGGT
GGATGATGATACCCTCACCGATGCACCGATTGATGACAACGCCGACGGTG
AATGTGAAGCGCCTGCCGAAGCTCCCTCAGAGATTCCCACTGGAAATGAC
AGTGTGGCGAATATTCCGACGGGGGGAGAAGACACGAGGGAGGCCGAGGA
GCTCGCTCCTGCCGCACCAGAGGCCGTTCCGGCCGTTGCGGACGATCTCT
CCGAGCAGGGAGAATGGACGGAGATCGTGGCGCCGGTGGAAGATGATGCC
GTCGACGACGCACCAACCGATGACAACGCCGACGGTGAATGTGAAGCGCC
TGCCGAAGCTCCCTCAGAGATTCCCACTGGAAATGACAGTGTGGCGAATA
TTCCGACGGGGGGAGAAGACACGAGGGAGGCCGAGGAGCTCGCTCCTGCC
GCACCAGAGGCCGTTCCGGCCGTTGCGGACGATCTCTCCGAGCAGGGAGA
ATGGACGGAGATCGTGGCGCCGGTGGAAGATGATGCCGTCGACGACGCAC
CAACCGATAATGTCACCGGAGCTGGAGACAACGCGCCGATCGGCGCTCCT
TCAGAGCCTGCTGCTGTGGCGGAAGTGCCGGTGGTGGACGAGCGAGCGGG
GCAGGCCGAGCAGCACTCCTCTGTCACATGGGAAGCGACGTCGGAAGTCG
CAGACGAGGCGTCCGAGACGGCAGAAATGGCGAGGGTCATGGCGGCGGTG
AAAGATGATGCTGTCGCCGAAGTGCCGATCGAAAATGTCACCGGAGCTGG
AGACAACGCGCCGATCGGCGCTCCTTCAGAGCCTGCTGCTGTGGCGGAAG
TGCCGGTGGTGGACGAGCGAGCGGGGCAGGCCGAGCAGCACTCCTCTGTC
ACATGGGAAGCGACGTCGGAAGTCGCAGACGAGGCGTCCGAGACGGCAGA
AATGGCGAGGGTCATGGCGGCGGTGAAAGATGATGCTGTCGCCGAAGTGC
CGATCGAA
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