mRNA_H-canaliculatus_F_contig1441.3445.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1441.3445.1
Unique NamemRNA_H-canaliculatus_F_contig1441.3445.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1441.3445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1441contigH-canaliculatus_F_contig1441:2929..6085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003890.1
Exons3
Model size2497
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1441.3445.1prot_H-canaliculatus_F_contig1441.3445.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1441 4168..5427 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.4405487-UTR-H-canaliculatus_F_contig1441:2928..41671622929195.4405487-UTR-H-canaliculatus_F_contig1441:2928..4167Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1441 2929..4167 -
1696845712.8396165-UTR-H-canaliculatus_F_contig1441:2928..41671696845712.8396165-UTR-H-canaliculatus_F_contig1441:2928..4167Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1441 2929..4167 -
1622929195.516301-UTR-H-canaliculatus_F_contig1441:5427..60851622929195.516301-UTR-H-canaliculatus_F_contig1441:5427..6085Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1441 5428..6085 -
1696845712.899498-UTR-H-canaliculatus_F_contig1441:5427..60851696845712.899498-UTR-H-canaliculatus_F_contig1441:5427..6085Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1441 5428..6085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.4643955-CDS-H-canaliculatus_F_contig1441:4167..45271622929195.4643955-CDS-H-canaliculatus_F_contig1441:4167..4527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1441 4168..4527 -
1696845712.8541534-CDS-H-canaliculatus_F_contig1441:4167..45271696845712.8541534-CDS-H-canaliculatus_F_contig1441:4167..4527Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1441 4168..4527 -
1622929195.4808943-CDS-H-canaliculatus_F_contig1441:5062..51461622929195.4808943-CDS-H-canaliculatus_F_contig1441:5062..5146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1441 5063..5146 -
1696845712.869022-CDS-H-canaliculatus_F_contig1441:5062..51461696845712.869022-CDS-H-canaliculatus_F_contig1441:5062..5146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1441 5063..5146 -
1622929195.4968746-CDS-H-canaliculatus_F_contig1441:5271..54271622929195.4968746-CDS-H-canaliculatus_F_contig1441:5271..5427Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1441 5272..5427 -
1696845712.879901-CDS-H-canaliculatus_F_contig1441:5271..54271696845712.879901-CDS-H-canaliculatus_F_contig1441:5271..5427Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1441 5272..5427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1441.3445.1

>prot_H-canaliculatus_F_contig1441.3445.1 ID=prot_H-canaliculatus_F_contig1441.3445.1|Name=mRNA_H-canaliculatus_F_contig1441.3445.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=200bp
MQELLYIFLAPEMARSTEATERAAEAHLGGGAVGAGINVGARVENKRSMS
QQATSAFGKPSRNPVPAGRHIDLQLPARANSARFLWCSVSDAFNPADLYK
GSIGASIVSKEELLSNGYEIMYLSWFRNELDFKHVATGKRHPTLIAVREW
YDATIYSHGTRTIYSERLELPHTWIEFASNLTDVDVVLARHMGGAAPMA*
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mRNA from alignment at H-canaliculatus_F_contig1441:2929..6085-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1441.3445.1 ID=mRNA_H-canaliculatus_F_contig1441.3445.1|Name=mRNA_H-canaliculatus_F_contig1441.3445.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3157bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1441:2929..6085- (Hapterophycus canaliculatus Oshoro5f female)
TGATCGATCTACGGAGTCCTCATTGAGATCTCCAATTTTTCTAAAGGACG
CGAGAGCTGATTCGGCGTAGATCGCGAGGCAAACCGCTTCATTTACGTAC
CAAAAATGAGAAGATCTCACCGGTGAAGATTTGTGTCCACATAAACATGG
GATGTAAGAGTGCTCTCGCGAGCAAATCCCGCACCAATAGTTTGATCGAT
GGAGAGAGACCTGTATCCTTGTTGAAGGCCACGGAATTTGAGCGACCTAC
CGATCATAGTTTCAGTAGAAGAATCGAATCACCTACTCGGCGAAACTGCA
ACATAGCGAGCTTGCGAAGGGGTGAGAGCATTCATGGAGGCTTAGCCTAC
GGTACGCCATGGTAACTTCGTCGGGGGTCGAAAAAGCAATTGGCCGCTGT
CTCGAATGGCGGGAGACACGCACGGGCGTTTTGCGCCTACACACGCATAC
CTCCAAGGCTGCGCGTCTTCAAACGTAGAGGAGAGAGATACCCGGTAGAT
GCAAAACCTGCGCTTCATTAAATGCTCATAGCCGACACTTGAGTCAGCTT
GAAAATTAGGGCAAGCTGAAGATTATTTCACCGTACAAAGGTTGATCATC
ACAACATTTCCTCGAAATTTGACATGATTCCATATCCGACGGACACTTCT
GCTCCAATATGCAGGAGCTTTTGTACATTTTTTTGGCTCCTGAAATGGCC
AGGAGCACCGAGGCTACCGAGCGCGCAGCAGAAGCGCATTTGGGCGGAGG
CGCGGTTGGAGCAGGGATCAATGTTGGTGCCAGGGTGGAAAACAAAAGGA
GCATGTCACAACAGGTCAGAGACTATTCGTCGCAGGGCAGACGTCACCAG
ACATGACCAAGCTTCTCCCTCGGGCTTAAGACCACCCCAGTAACATTTGT
TTGTGTCGCATCTTGACTATTGACCTCATATATATGCAGGCAACCTCGGC
CTTCGGAAAGCCCTCTCGGAATCCCGTTCCCGCTGGAAGGCACATCGACC
TTCAGCTTCCGGCAAGGGCGAATGTGCGTCCTTGTTGTCTTGGGTTCCGT
GAAGGATTTCAGGGAGAGCATGGTTCTTGTAAGGGGTCGTACTCTCGATC
GACTGTGCTTGAAATAGTGTGCTACCTGCACAATGAACCCTTTGTTGGGA
ACTCGGCAGACACCTCGAGGGACGTCTCACACGACATACCTGAGGAGGCG
TTCCTACAATGTTGCGATGTCTTTTAAAGAAAATCATAAAAACACCGTTG
GAGCACCTCCTGAGGTACGTCGTGCAAAGCGTAGCTGGAGGCTTCTGTTA
ACCCTAACCCTTAGCTCCAAACAGTTAAGGTTCGTTGAAGTGTAAGGTTG
GGACAAGAACATCAACAGAAAAAACGTTTGTTGTAACTTACCGCAAGTGT
TTGATACCTCCAATGTCAAATTGTACTCATGAAACAGGCCAGGCGTTCAT
CTAGACTCTTTCTTTAAAAGACTGAAGAATGTGCTCACGGGTACGTTTTG
TATTTGATGTGAGTCAACTGCGCGATGATTTCGTTCCCGTTTCTCCTGTT
CTATGCAGTCTGCTCGCTTTCTTTGGTGCAGTGTCTCGGACGCATTTAAT
CCAGCCGATCTTTACAAGGGCAGCATCGGGGCTAGCATCGTGTCCAAAGA
GGAGCTGCTCTCAAACGGCTATGAAATTATGTATTTAAGCTGGTTCAGGA
ACGAGCTGGACTTCAAGCATGTGGCAACAGGAAAGCGTCATCCTACATTG
ATCGCCGTGCGAGAGTGGTACGACGCAACGATTTATTCGCACGGTACAAG
AACGATATATTCTGAGAGACTGGAATTGCCCCACACGTGGATCGAGTTTG
CCAGCAACTTGACCGATGTTGACGTTGTGCTTGCTAGACACATGGGGGGT
GCTGCACCGATGGCGTAGACATAGAATATATCTACAGCATATCATTGGTC
AAGACGTCAGTGTGACTGTGTCAGGCCAGAGGATGGGTCTGATCGTACAT
GCTGCAGACAGAACCGGCGGTGTTGGACGGAATTGCAGGTGTTACAATTG
GGATGCACTTGGTCGATGGAACGTAGCCTGATATAGATAGGACAACTTCA
CGAATGGTGTGTGACGGGAGGAGGTGTGGCGACTTCAGCGTGCAATAAAA
CGTTTTACCGCCATTAAAAAAAAATGTTGTCAGAACCACGAAAGATACCG
GCTGAGCCACGTCTCCGCAGGCGTCTCAGGAGGCTTACGTTGAATTCCAT
GCAGTGAGGGTTCCGTGCGTTGGACGGGATAGTAACATCAACACAAGATG
AATGGCGTGAGACTCGGTGGGGTGAAATATGCATGGATTGTGGTAAGAGG
GACGTAGCGAAAGTGAAATCCTCATGTGACGAATGAGAAAGAAAAGCGAT
GTTTATCCGGGATTTGTATACTTCCTACGATGAGGAGGGAAATGATTTGG
GGAACTAAGTTTTCTGATTTGTTCGTTCAGTGGCCAGGTGCGTGGTGATC
CCCCACGTCGCGAAAGCATGCCAACAATGGACCTGATGGAAGAAGCAATG
GTAGCAATGAAACGGGGGGATCAGCATGCAGACGACTATCCATCCTCGTT
TGCCGTGACTAGTCACGAAGTCGACGAAAAATGTCTCGAATTTCCACGCA
CCTGAGAGCACGCACGCGTGGTTCGAAAGTGAGGTCGCACGACAAGAAGA
ACTGATGTAGAGAGAGAATGCACGCTTCACTTAGTTTTTTGCAATCCTGA
CTAGACTCCCCTGCGCTGGCCCTTTATTTCAGCCATCATCACAAAATATT
TGTCGAAGGTAAATCGGGTGCACGGCAGTGACCAGCGGCTGAGATGGGCG
GTAGTCGCCGGAAGCGCGACATTGAGAAAAAATGTTGGTGTCAGGAGGGG
GAATGTGATGGTAGGAGCGAAGACGAGTCAGTGGGGATAAAAATGACTCG
AAGGAATATAACTCGAAGTAGTCTGAAGGATGAACGACCTCATCATTTTT
GCCAAGCCCCGCCTTGGATCCAGGAACAAGATCGGCCTCGTAACGCCGGA
AATGTTCCTCATTCACATGGCGTTGTTGAACTTGGATATGTGCTCGCCCG
GCAAGTAAGTCCTCGCCAGCCCCTTCCTCCTTGCTTTTATTTTGTTTTAG
TCACGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1441:2929..6085-

>mRNA_H-canaliculatus_F_contig1441.3445.1 ID=mRNA_H-canaliculatus_F_contig1441.3445.1|Name=mRNA_H-canaliculatus_F_contig1441.3445.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1200bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1441:2929..6085- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGGAGCTTTTGTACATTTTTTTGGCTCCTGAAATGGCCAGGAGCAC
CGAGGCTACCGAGCGCGCAGCAGAAGCGCATTTGGGCGGAGGCGCGGTTG
GAGCAGGGATCAATGTTGGTGCCAGGGTGGAAAACAAAAGGAGCATGTCA
CAACAGATGCAGGAGCTTTTGTACATTTTTTTGGCTCCTGAAATGGCCAG
GAGCACCGAGGCTACCGAGCGCGCAGCAGAAGCGCATTTGGGCGGAGGCG
CGGTTGGAGCAGGGATCAATGTTGGTGCCAGGGTGGAAAACAAAAGGAGC
ATGTCACAACAGGCAACCTCGGCCTTCGGAAAGCCCTCTCGGAATCCCGT
TCCCGCTGGAAGGCACATCGACCTTCAGCTTCCGGCAAGGGCGAATGCAA
CCTCGGCCTTCGGAAAGCCCTCTCGGAATCCCGTTCCCGCTGGAAGGCAC
ATCGACCTTCAGCTTCCGGCAAGGGCGAATTCTGCTCGCTTTCTTTGGTG
CAGTGTCTCGGACGCATTTAATCCAGCCGATCTTTACAAGGGCAGCATCG
GGGCTAGCATCGTGTCCAAAGAGGAGCTGCTCTCAAACGGCTATGAAATT
ATGTATTTAAGCTGGTTCAGGAACGAGCTGGACTTCAAGCATGTGGCAAC
AGGAAAGCGTCATCCTACATTGATCGCCGTGCGAGAGTGGTACGACGCAA
CGATTTATTCGCACGGTACAAGAACGATATATTCTGAGAGACTGGAATTG
CCCCACACGTGGATCGAGTTTGCCAGCAACTTGACCGATGTTGACGTTGT
GCTTGCTAGACACATGGGGGGTGCTGCACCGATGGCGTAGTCTGCTCGCT
TTCTTTGGTGCAGTGTCTCGGACGCATTTAATCCAGCCGATCTTTACAAG
GGCAGCATCGGGGCTAGCATCGTGTCCAAAGAGGAGCTGCTCTCAAACGG
CTATGAAATTATGTATTTAAGCTGGTTCAGGAACGAGCTGGACTTCAAGC
ATGTGGCAACAGGAAAGCGTCATCCTACATTGATCGCCGTGCGAGAGTGG
TACGACGCAACGATTTATTCGCACGGTACAAGAACGATATATTCTGAGAG
ACTGGAATTGCCCCACACGTGGATCGAGTTTGCCAGCAACTTGACCGATG
TTGACGTTGTGCTTGCTAGACACATGGGGGGTGCTGCACCGATGGCGTAG
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