mRNA_H-canaliculatus_F_contig1441.3446.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1441.3446.1 vs. uniprot
Match: A0A6H5JE26_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE26_9PHAE) HSP 1 Score: 343 bits (881), Expect = 7.620e-97 Identity = 170/245 (69.39%), Postives = 195/245 (79.59%), Query Frame = 3
Query: 549 DEVDIEAFWDHVQRATGSRSASWATFSSLFETYLRTNYAAEMSQLPAATRAEPEMILRYAFERGSATRAAAGERICPEHLTLFLSRFGPMRWCLIKAARSIFDESGCLVPWFHGKISSGEAQRAVEEWEASNQDGRNQRGAFLFRYGD-RLAIRFSFRRRSGEERLATCLVENEGERGYTLPGSEDDVYWPDLQAFVAERGRGDFLHPVPSALYLECTEEIESRRRAQQM---SESQMAYERQFF 1271
DE D AFWD VQR TG+RSASW TFS+ FETYLR +YAAEMSQLP ATRAE EM+LRYAF+RGS RAAAGER+ P+HL LFL+RFGPM+ CLIKAARS+FDESGCLVPWFHGK+S EA+RA+EEWEAS +GR QRG FLFRY D I FSFRR+ GE RL TCL+ NEG RGYTLP + D W DL+ FVAE+ RGDF HPVPSAL+ EC EEIE+RRRA+Q E+Q+A+ RQ F
Sbjct: 4 DEADTRAFWDLVQRTTGARSASWDTFSATFETYLRRHYAAEMSQLPRATRAEAEMVLRYAFDRGSPARAAAGERVAPKHLALFLTRFGPMKSCLIKAARSLFDESGCLVPWFHGKLSREEARRAIEEWEASRGNGREQRGVFLFRYSDWHSTICFSFRRKKGERRLVTCLINNEGRRGYTLPDTSGDGCWRDLREFVAEQRRGDFRHPVPSALHRECVEEIEARRRAEQFVPTPENQIAHARQLF 248
BLAST of mRNA_H-canaliculatus_F_contig1441.3446.1 vs. uniprot
Match: D8LBM4_ECTSI (TPR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM4_ECTSI) HSP 1 Score: 342 bits (877), Expect = 5.720e-96 Identity = 171/248 (68.95%), Postives = 195/248 (78.63%), Query Frame = 3
Query: 549 DEVDIEAFWDHVQRATGSRSASWATFSSLFETYLRTNYAAEMSQLPAATRAEPEMILRYAFERGSATRAAAGERICPEHLTLFLSRFGPMRWCLIKAARSIFDESGCLVPWFHGKISSGEAQRAVEEWEASNQDGRNQRGAFLFRYGD-RLAIRFSFRRRSGEERLATCLVENEGERGYTLPGSEDDVYWPDLQAFVAERGRGDFLHPVPSALYLECTEEIESRRRAQQM---SESQMAYERQFFEES 1280
DE D AFWD +QR TG+RSASW TFS+ FETYLR YAAEMSQLP ATRAE EM+LRYAF+RGS RAAAGER+ P+HL LFL+RFGPMR CLIKAARS+FDESGCLVPWFHGK+S EA+RA+EEWEAS +GR QRG FLFRY D I FSFRR+ GE RL TCL+ NEG RGYTLP + D W DL+ FVAE+ RGDF PVPSAL+ EC EEIE+RRRA+Q E+Q+AY RQ F E+
Sbjct: 4 DEADTRAFWDLMQRTTGARSASWDTFSATFETYLRRYYAAEMSQLPRATRAEAEMVLRYAFDRGSPARAAAGERVAPKHLALFLTRFGPMRSCLIKAARSLFDESGCLVPWFHGKLSRDEARRAIEEWEASRGNGREQRGVFLFRYSDWHSTICFSFRRKRGERRLVTCLINNEGSRGYTLPDTSGDGCWRDLREFVAEQRRGDFQQPVPSALHRECVEEIEARRRAEQFVPTPENQIAYARQLFGEA 251
BLAST of mRNA_H-canaliculatus_F_contig1441.3446.1 vs. uniprot
Match: A0A6H5L6Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z9_9PHAE) HSP 1 Score: 174 bits (442), Expect = 8.750e-41 Identity = 107/345 (31.01%), Postives = 156/345 (45.22%), Query Frame = 3
Query: 2694 SLRQFWLQSCGD-INPGRMSSTCGVALSMHSVTRRPLRDASDEAPSRKGPARALHVPPGGMSGRGVLFQTWRDEHGQIEIKATPRDRHHVEGVRLLNKVSMDEVSRR-------------------------------------------------------GETGSCLMSPIISGPTTASFLPGTASVSYYLGRYDVLVKTEGPKGGKRGMEEYLRDTFFPVMKVGRERYFPAMEEGKLSTRWEGTGDFKIAWKGDEVWLETELLHFCEVAVARKRGFRFKPWGRSGRERLPTPDAPRSSGRAEEAIQEGPLGLGALGSPLGSDPFQGGTVRFQNATKVCH*QV 3560
S WL+S GD +PG + G L+MHSV+ R H+PP V +Q WRD++GQ+E+ A P+D+ +VE VRLL+ V M+E+S R GE+G+CL+ P+I GP+ +F GTAS+ Y++ YDVL +T G KGG+ GM+ Y+ + +FPV+K RWE G+F + WKG+E+WLETEL HF + VA KR +R GR ++A+ GP+ L L +P GS P ++ N + V + +V
Sbjct: 288 SCHHMWLRSRGDDTDPGARMAAGGTRLAMHSVS-----------------TRTAHLPPDDNLVHDVSYQRWRDKYGQVEVAAAPQDKKNVENVRLLDNVYMEELSHRNLPLMKEVVQLLWRLFGGPPVVGGDGGNTVARYALDLGCIPVLSFLSPLFPVLVRGESGTCLIDPVIEGPSGVTFASGTASIRYFVSTYDVLAQTNGEKGGRTGMQRYIGEMYFPVVKGDGPH-----------DRWEADGNFAVIWKGEELWLETELRHFSSLGVAFKRAWR------------------HLFGREDDALPSGPVSLTPLCTPFGSTPIPKAYIKVSNYSDVSNRRV 586 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1441.3446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1441.3446.1 >prot_H-canaliculatus_F_contig1441.3446.1 ID=prot_H-canaliculatus_F_contig1441.3446.1|Name=mRNA_H-canaliculatus_F_contig1441.3446.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1007bp MGSMSDEVDIEAFWDHVQRATGSRSASWATFSSLFETYLRTNYAAEMSQLback to top mRNA from alignment at H-canaliculatus_F_contig1441:6089..20957- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1441.3446.1 ID=mRNA_H-canaliculatus_F_contig1441.3446.1|Name=mRNA_H-canaliculatus_F_contig1441.3446.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=14869bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1441:6089..20957- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1441:6089..20957- >mRNA_H-canaliculatus_F_contig1441.3446.1 ID=mRNA_H-canaliculatus_F_contig1441.3446.1|Name=mRNA_H-canaliculatus_F_contig1441.3446.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6042bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1441:6089..20957- (Hapterophycus canaliculatus Oshoro5f female)back to top |