mRNA_H-canaliculatus_F_contig144.3438.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig144.3438.1
Unique NamemRNA_H-canaliculatus_F_contig144.3438.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig144.3438.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 5.410e-50
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 2 
Query:    2 MKAATRVRRRHQIGERFANLYGYTLDGGGAFVGEGMVPDRSVEAFPLPRLAQRQFYASLRTIGVEIVECSGEADQEIAKASAEDESGRTFALGSDSDFFVFERCRYINFDDLESESTEDRKG 367
            MKAATR RRR Q GE+ ANLY YTLDGGG+FVG G  PD S EAFPLP+LAQRQFYASLRT GV+IVEC GEADQEIAKASAED +GRTFA+GSDSDF +FERCRY++FDDL     E+  G
Sbjct:   84 MKAATRERRRGQDGEKLANLYAYTLDGGGSFVGPGQAPDLSAEAFPLPKLAQRQFYASLRTTGVKIVECPGEADQEIAKASAEDGTGRTFAVGSDSDFLIFERCRYVHFDDLVLHRREEGDG 205
[Close]
BLAST of mRNA_H-canaliculatus_F_contig144.3438.1 vs. uniprot
Match: A0A7S3HTM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTM6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.030e-10
Identity = 46/117 (39.32%), Postives = 61/117 (52.14%), Query Frame = 2 
Query:    2 MKAATRVRRRHQIGERFANLYGYTLDGGGAFVGEGMVPDRSVEAFPLPRLAQRQFYASLRTIGVEIVECSGEADQEIAKA--------SAEDESGRTFALGSDSDFFVFERCRYINF 328
            MK+ TR  R     E++A  Y +          E  V     + FPLP L+Q+Q YA+L+ +GV    CSGEADQEIAKA        +  +E+   FA G DSD+F  + C YI F
Sbjct:   86 MKSDTRAARATDHEEQWAKFYDFC---------EENVKRTDNDTFPLPPLSQKQLYATLKKLGVACKSCSGEADQEIAKAVQFGNKDLAVGEETH--FAYGRDSDYFAMKDCPYIAF 191
[Close]
BLAST of mRNA_H-canaliculatus_F_contig144.3438.1 vs. uniprot
Match: K0RU78_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RU78_THAOC)

HSP 1 Score: 55.5 bits (132), Expect = 2.440e-6
Identity = 40/111 (36.04%), Postives = 55/111 (49.55%), Query Frame = 2 
Query:   83 GGAFVGEGMVPDR-SVEAFPLPRLAQRQFYASLRTI------------GVEIVECSGEADQEIAKASAEDESGRTFALGSDSDFFVFE------------RCRYINFDDLE 340
            GGA  GEG   +  +++ FP   L+  Q   SL                + IV C GEAD E+A+ASAED +G T+ +G+DSDF V+               RYI FD+L+
Sbjct:  294 GGASNGEGESDELFNLQHFPFSPLSLEQVERSLFAFEEFAHILGAGPDSISIVHCEGEADVEVARASAEDHTGDTYLVGNDSDFLVYGFPDREESFINSGEVRYIPFDELD 404
[Close]
BLAST of mRNA_H-canaliculatus_F_contig144.3438.1 vs. uniprot
Match: A0A7S0SVF1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVF1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.910e-6
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  110 VPDRSVEAFPLPRLAQRQFYASLRTI-GVEIVECSGEADQEIAKA------SAEDESGRTFALGSDSDFFVFERCRYINFDDL 337
            V D+S ++ PLP+LA +QF + L  I G+++V C  EAD+ IA+A      S ED     +  GSDSDF+V++ C YI    L
Sbjct:   31 VLDKS-KSLPLPKLAIKQFKSILTKIEGIQVVHCPFEADRVIAEACVEGNKSLEDGEELHYCYGSDSDFYVYKGCPYIELGTL 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig144.3438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSM0_ECTSI5.410e-5074.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3HTM6_9STRA1.030e-1039.32Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
K0RU78_THAOC2.440e-636.04Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S0SVF1_9STRA6.910e-642.17Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig144contigH-canaliculatus_F_contig144:924..2317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue2e-43
Seed eggNOG ortholog2880.D8LSM0
Preferred nameYTHDC2
KEGG koko:K14442,ko:K20099
KEGG Pathwayko03018,map03018
EggNOG free text desc.positive regulation of polysome binding
EggNOG OGsCOG1643@1,KOG0921@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size383
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig144.3438.1prot_H-canaliculatus_F_contig144.3438.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig144 924..2316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.9022205-CDS-H-canaliculatus_F_contig144:923..9651622929193.9022205-CDS-H-canaliculatus_F_contig144:923..965Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 924..965 -
1696845712.2252138-CDS-H-canaliculatus_F_contig144:923..9651696845712.2252138-CDS-H-canaliculatus_F_contig144:923..965Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 924..965 -
1622929193.9191337-CDS-H-canaliculatus_F_contig144:1308..14441622929193.9191337-CDS-H-canaliculatus_F_contig144:1308..1444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 1309..1444 -
1696845712.235699-CDS-H-canaliculatus_F_contig144:1308..14441696845712.235699-CDS-H-canaliculatus_F_contig144:1308..1444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 1309..1444 -
1622929193.9326074-CDS-H-canaliculatus_F_contig144:2113..23161622929193.9326074-CDS-H-canaliculatus_F_contig144:2113..2316Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 2114..2316 -
1696845712.2443168-CDS-H-canaliculatus_F_contig144:2113..23161696845712.2443168-CDS-H-canaliculatus_F_contig144:2113..2316Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 2114..2316 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.959799-UTR-H-canaliculatus_F_contig144:2316..23171622929193.959799-UTR-H-canaliculatus_F_contig144:2316..2317Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig144 2317..2317 -
1696845712.252701-UTR-H-canaliculatus_F_contig144:2316..23171696845712.252701-UTR-H-canaliculatus_F_contig144:2316..2317Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig144 2317..2317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig144.3438.1

>prot_H-canaliculatus_F_contig144.3438.1 ID=prot_H-canaliculatus_F_contig144.3438.1|Name=mRNA_H-canaliculatus_F_contig144.3438.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
MKAATRVRRRHQIGERFANLYGYTLDGGGAFVGEGMVPDRSVEAFPLPRL
AQRQFYASLRTIGVEIVECSGEADQEIAKASAEDESGRTFALGSDSDFFV
FERCRYINFDDLESESTEDRKGFDAAA
back to top

mRNA from alignment at H-canaliculatus_F_contig144:924..2317-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig144.3438.1 ID=mRNA_H-canaliculatus_F_contig144.3438.1|Name=mRNA_H-canaliculatus_F_contig144.3438.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1394bp|location=Sequence derived from alignment at H-canaliculatus_F_contig144:924..2317- (Hapterophycus canaliculatus Oshoro5f female)
GATGAAGGCCGCTACCCGGGTGCGGCGGCGCCACCAGATCGGGGAGAGGT
TCGCCAACCTCTACGGCTACACCCTAGACGGAGGGGGCGCGTTCGTGGGC
GAGGGGATGGTCCCCGACCGCAGCGTGGAGGCGTTTCCGCTGCCCAGGCT
CGCGCAGAGGCAGTTCTACGCTTCGCTCCGCACAATCGGCGTCGAGATCG
TCGAGTGAGTTCGTGTTTGCGCAAGGTGGCGGCTTCTGGTTTTGGGTTGG
ACGCGGTGCCTTCACCGCCACGGCCGCCGCCGCCGCCAGCTTGTGCGTGC
GAGCACGAAGAAATATTGTGGGACGTGCTCTGCATGCGCAAACAAATTGT
GGCTTTTTTGCGGTGTACGTTGGGGTTTGATCCTGCCGTGCTACGGAGCA
TTTGACGAGTGCTGCTCTGCGGACGTGTTGGGTGACGGGCTCGATCTGCC
AACCCGGAGAAAGAAATGGGTGCCGAACGAAACCGGCGCCCAAGATGGAT
TCGACTAGCCGAGGTGGAAACCTGCAACAAAAGTAACAGCGAGAGCCTCG
CTTCGTACGAAAACGAAATCGGAAAATTAAAAACAGCACGAAACATCCAA
GGCACCGCAACGGCCGACACGGCTTCACACGTCAACACATGGCACGACGC
GATGCCACCCCCCACGCGAGACAGGATGATTGTAGCACGTGCACAAAGAC
GCAGCGCGAAGACGCAACGACACGCGAAGCCGCCCAGCCCCGCACAACGC
ACAGTACCACACCACATGTCACGCCACGCCACCGCGCGGTACGAGGCGAC
GCCGCAAATGGCAACAGCACAGCAAGGAGCATAGCACAGGCCAATACAAC
GCGACGGGACGCGATGCTCGCAGGTGTTCCGGAGAGGCGGACCAGGAGAT
CGCCAAGGCCAGCGCGGAGGACGAGTCGGGGAGGACGTTCGCGCTCGGAA
GCGACAGCGATTTCTTCGTCTTCGAGCGCTGCCGCTACATCAACTTCGAC
GACCTGGAGGTGAGGAAGTAACGTGCTTGTATGTGCGTAGGCGCGTCTTG
TGTGATCGAGAGAGGGAAAGGCAGAGAGGGCTGCGAGGCCTGAAGAAACG
CGATTGTCCTCGGTGTGTCTGACCGACTCCTGCCATGTTTACCGCACGTC
TCGCATCAGCGCTTGGTCATCGTACAGCACGCGTTGGAGTTCGACGAAGT
TTCCTCTCCGTCCAGCGTGATCTCAGCTTCTCCTGCCGTCTCCCCTCGAC
CCCTCCCAACCCAACCCATCCATCCACAAACACCCACAACCACCCCCCCA
CCCCTGCAACAACACCCCTAACACGTATTCCAACCCACAGCTGCCCCCGC
AGAGTGAAAGCACGGAGGACCGCAAGGGTTTCGACGCGGCGGCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig144:924..2317-

>mRNA_H-canaliculatus_F_contig144.3438.1 ID=mRNA_H-canaliculatus_F_contig144.3438.1|Name=mRNA_H-canaliculatus_F_contig144.3438.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig144:924..2317- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGGCCGCTACCCGGGTGCGGCGGCGCCACCAGATCGGGGAGAGGTT
CGCCAACCTCTACGGCTACACCCTAGACGGAGGGGGCGCGTTCGTGGGCG
AGGGGATGGTCCCCGACCGCAGCGTGGAGGCGTTTCCGCTGCCCAGGCTC
GCGCAGAGGCAGTTCTACGCTTCGCTCCGCACAATCGGCGTCGAGATCGT
CGAATGAAGGCCGCTACCCGGGTGCGGCGGCGCCACCAGATCGGGGAGAG
GTTCGCCAACCTCTACGGCTACACCCTAGACGGAGGGGGCGCGTTCGTGG
GCGAGGGGATGGTCCCCGACCGCAGCGTGGAGGCGTTTCCGCTGCCCAGG
CTCGCGCAGAGGCAGTTCTACGCTTCGCTCCGCACAATCGGCGTCGAGAT
CGTCGAGTGTTCCGGAGAGGCGGACCAGGAGATCGCCAAGGCCAGCGCGG
AGGACGAGTCGGGGAGGACGTTCGCGCTCGGAAGCGACAGCGATTTCTTC
GTCTTCGAGCGCTGCCGCTACATCAACTTCGACGACCTGGAGGTGTTCCG
GAGAGGCGGACCAGGAGATCGCCAAGGCCAGCGCGGAGGACGAGTCGGGG
AGGACGTTCGCGCTCGGAAGCGACAGCGATTTCTTCGTCTTCGAGCGCTG
CCGCTACATCAACTTCGACGACCTGGAGAGTGAAAGCACGGAGGACCGCA
AGGGTTTCGACGCGGCGGCGAGTGAAAGCACGGAGGACCGCAAGGGTTTC
GACGCGGCGGCG
back to top