mRNA_H-canaliculatus_F_contig14397.3437.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14397.3437.1
Unique NamemRNA_H-canaliculatus_F_contig14397.3437.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14397.3437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14397contigH-canaliculatus_F_contig14397:1994..2434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size443
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.8514411-CDS-H-canaliculatus_F_contig14397:1993..24341622929193.8514411-CDS-H-canaliculatus_F_contig14397:1993..2434Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14397 1994..2434 +
1696845712.2161634-CDS-H-canaliculatus_F_contig14397:1993..24341696845712.2161634-CDS-H-canaliculatus_F_contig14397:1993..2434Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14397 1994..2434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14397.3437.1prot_H-canaliculatus_F_contig14397.3437.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14397 1994..2434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14397.3437.1

>prot_H-canaliculatus_F_contig14397.3437.1 ID=prot_H-canaliculatus_F_contig14397.3437.1|Name=mRNA_H-canaliculatus_F_contig14397.3437.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=147bp
TTRRRRRLRPRHGRRLSPAARGFLSPRPRRPLPRVISGGPYFPEAGSRPI
PFGVGGIVAVAAAGGARCWSGPSRPAGSWERPFQGPVHPRARPGLPRLLP
PPPPPPPVFCQKHQMGPHPRRRRAHRLRSQETDSPREDLVVLPRRPR
back to top

mRNA from alignment at H-canaliculatus_F_contig14397:1994..2434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14397.3437.1 ID=mRNA_H-canaliculatus_F_contig14397.3437.1|Name=mRNA_H-canaliculatus_F_contig14397.3437.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=441bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14397:1994..2434+ (Hapterophycus canaliculatus Oshoro5f female)
ACCACCCGCCGCCGCCGCCGCCTCCGCCCCCGCCACGGGCGTCGCCTTTC
TCCTGCTGCGCGCGGTTTCCTCTCGCCCCGCCCTCGCCGGCCCCTGCCGC
GGGTGATCTCTGGAGGTCCCTACTTCCCCGAGGCTGGTTCGCGACCGATC
CCTTTTGGTGTTGGTGGTATTGTGGCTGTTGCTGCTGCTGGTGGCGCGCG
CTGTTGGAGTGGGCCGTCACGTCCGGCGGGAAGCTGGGAGCGTCCTTTTC
AGGGACCCGTGCATCCCCGCGCCCGTCCAGGCCTGCCCCGCCTCCTGCCG
CCGCCGCCGCCGCCTCCGCCTGTGTTCTGCCAGAAGCATCAAATGGGCCC
CCACCCCCGCCGCCGCCGCGCCCACCGACTCCGAAGCCAGGAGACTGATT
CGCCGCGGGAGGATCTCGTCGTGCTCCCTCGGCGACCCCGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14397:1994..2434+

>mRNA_H-canaliculatus_F_contig14397.3437.1 ID=mRNA_H-canaliculatus_F_contig14397.3437.1|Name=mRNA_H-canaliculatus_F_contig14397.3437.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=882bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14397:1994..2434+ (Hapterophycus canaliculatus Oshoro5f female)
ACCACCCGCCGCCGCCGCCGCCTCCGCCCCCGCCACGGGCGTCGCCTTTC
TCCTGCTGCGCGCGGTTTCCTCTCGCCCCGCCCTCGCCGGCCCCTGCCGC
GGGTGATCTCTGGAGGTCCCTACTTCCCCGAGGCTGGTTCGCGACCGATC
CCTTTTGGTGTTGGTGGTATTGTGGCTGTTGCTGCTGCTGGTGGCGCGCG
CTGTTGGAGTGGGCCGTCACGTCCGGCGGGAAGCTGGGAGCGTCCTTTTC
AGGGACCCGTGCATCCCCGCGCCCGTCCAGGCCTGCCCCGCCTCCTGCCG
CCGCCGCCGCCGCCTCCGCCTGTGTTCTGCCAGAAGCATCAAATGGGCCC
CCACCCCCGCCGCCGCCGCGCCCACCGACTCCGAAGCCAGGAGACTGATT
CGCCGCGGGAGGATCTCGTCGTGCTCCCTCGGCGACCCCGGACCACCCGC
CGCCGCCGCCGCCTCCGCCCCCGCCACGGGCGTCGCCTTTCTCCTGCTGC
GCGCGGTTTCCTCTCGCCCCGCCCTCGCCGGCCCCTGCCGCGGGTGATCT
CTGGAGGTCCCTACTTCCCCGAGGCTGGTTCGCGACCGATCCCTTTTGGT
GTTGGTGGTATTGTGGCTGTTGCTGCTGCTGGTGGCGCGCGCTGTTGGAG
TGGGCCGTCACGTCCGGCGGGAAGCTGGGAGCGTCCTTTTCAGGGACCCG
TGCATCCCCGCGCCCGTCCAGGCCTGCCCCGCCTCCTGCCGCCGCCGCCG
CCGCCTCCGCCTGTGTTCTGCCAGAAGCATCAAATGGGCCCCCACCCCCG
CCGCCGCCGCGCCCACCGACTCCGAAGCCAGGAGACTGATTCGCCGCGGG
AGGATCTCGTCGTGCTCCCTCGGCGACCCCGG
back to top