mRNA_H-canaliculatus_F_contig1439.3433.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1439.3433.1
Unique NamemRNA_H-canaliculatus_F_contig1439.3433.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1439.3433.1 vs. uniprot
Match: D8LJG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG5_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 2.860e-64
Identity = 113/138 (81.88%), Postives = 122/138 (88.41%), Query Frame = 1 
Query:    1 EAALLERLGVKLVGRAVFFVDHVFPRVEELPGGLRDAAMVEALLAAPRLSQQHERFRSALAELEFVPTSGKANTLVRPRQTFDPEVPELPALLPESKFPGGVFRHKDVLAALRPLGLQGALGWPGLVEAAASVEAMAR 414
            EA LLE LG +LVGRA FFV+HVFPR+EELP GLRD AMVEALLAAPRLSQQH RFR+ALAELEFVPT+ K+  LVRP + FDPEVPELP+LLPES+FP GVFRHKDVLAALRPLGLQG LGW GLVEAAASVEAM R
Sbjct:  476 EAKLLEVLGARLVGRAAFFVEHVFPRMEELPNGLRDVAMVEALLAAPRLSQQHGRFRTALAELEFVPTTSKSKKLVRPHEIFDPEVPELPSLLPESRFPDGVFRHKDVLAALRPLGLQGTLGWGGLVEAAASVEAMRR 613
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BLAST of mRNA_H-canaliculatus_F_contig1439.3433.1 vs. uniprot
Match: A0A6H5K4B9_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B9_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.320e-63
Identity = 112/138 (81.16%), Postives = 120/138 (86.96%), Query Frame = 1 
Query:    1 EAALLERLGVKLVGRAVFFVDHVFPRVEELPGGLRDAAMVEALLAAPRLSQQHERFRSALAELEFVPTSGKANTLVRPRQTFDPEVPELPALLPESKFPGGVFRHKDVLAALRPLGLQGALGWPGLVEAAASVEAMAR 414
            EA LLE LG +LV RA FFV+HVFPR+EELP GLRD AMVEALLAAPRLSQQH RFR+ALAELEFVPT+ K   LVRP + FDPEVPELP+LLPES+FP GVFRHKDVLAALRPLGLQG LGW GLVEAAASVEAM R
Sbjct:  861 EAKLLEVLGARLVDRAAFFVEHVFPRIEELPNGLRDVAMVEALLAAPRLSQQHGRFRTALAELEFVPTTSKTKKLVRPHEIFDPEVPELPSLLPESRFPDGVFRHKDVLAALRPLGLQGTLGWGGLVEAAASVEAMRR 998
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BLAST of mRNA_H-canaliculatus_F_contig1439.3433.1 vs. uniprot
Match: A0A4D6LKX8_VIGUN (Histidine kinase-like ATPase n=1 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6LKX8_VIGUN)

HSP 1 Score: 75.1 bits (183), Expect = 5.650e-13
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 1 
Query:   25 GVKLVGRAVFFVDHVFPRVEELPGGLRDAAMVEALLAAPRLSQQHERFRSALAELEFVPTSGKANTLVRPRQTFDPEVPELPALLPES-KFPGGVFRHKDVLAALRPLGLQGALGWPGLVEAAASVE 402
            GV+ +G+A F++ HVF RV EL   +RD+ M+  L     LS +    + +L  L+F+PT   A  L  P   +DP   EL ALL +S  FP G FR  ++L  LR LGL+ ++    ++E A  +E
Sbjct:  875 GVERMGKAQFYMQHVFNRVSELQADVRDSIMLSVLQNLALLSLEDAYIKDSLKNLKFIPTLTGA--LKCPSVLYDPYNEELYALLEDSDNFPAGAFRESEILNILRGLGLRTSVSPDTVIECARCIE 999
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BLAST of mRNA_H-canaliculatus_F_contig1439.3433.1 vs. uniprot
Match: A0A151R3C6_CAJCA (Sacsin n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R3C6_CAJCA)

HSP 1 Score: 73.9 bits (180), Expect = 1.440e-12
Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 1 
Query:    1 EAALLERLGVKLVGRAVFFVDHVFPRVEELPGGLRDAAMVEALLAAPRLSQQHERFRSALAELEFVPTSGKANTLVRPRQTFDPEVPELPALLPES-KFPGGVFRHKDVLAALRPLGLQGALGWPGLVEAAASVE 402
            E  L    GV+ +G+A F+  HVF RV +    +RD+ M+  L   P LS +    ++ L  L+F+PT      L  P   +DP   EL ALL +S  FP G FR  ++L  LR LGL+ ++    ++E+A  +E
Sbjct:  537 EDILSRYYGVERMGKAQFYKQHVFNRVNDFQADVRDSIMLSVLQNLPLLSLEDISIKNFLRNLKFIPTLN--GDLKCPSVLYDPSNEELYALLEDSGSFPAGAFRESEILNILRGLGLRTSVSPETILESARCIE 669
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BLAST of mRNA_H-canaliculatus_F_contig1439.3433.1 vs. uniprot
Match: UPI00098DA6D2 (sacsin isoform X1 n=2 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DA6D2)

HSP 1 Score: 73.9 bits (180), Expect = 1.440e-12
Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 1 
Query:    1 EAALLERLGVKLVGRAVFFVDHVFPRVEELPGGLRDAAMVEALLAAPRLSQQHERFRSALAELEFVPTSGKANTLVRPRQTFDPEVPELPALLPES-KFPGGVFRHKDVLAALRPLGLQGALGWPGLVEAAASVE 402
            E  L    GV+ +G+A F+  HVF RV +    +RD+ M+  L   P LS +    ++ L  L+F+PT      L  P   +DP   EL ALL +S  FP G FR  ++L  LR LGL+ ++    ++E+A  +E
Sbjct:  869 EDILSRYYGVERMGKAQFYKQHVFNRVNDFQADVRDSIMLSVLQNLPLLSLEDISIKNFLRNLKFIPTLN--GDLKCPSVLYDPSNEELYALLEDSGSFPAGAFRESEILNILRGLGLRTSVSPETILESARCIE 1001
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BLAST of mRNA_H-canaliculatus_F_contig1439.3433.1 vs. uniprot
Match: A0A2K1K3C6_PHYPA (RING-type domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K3C6_PHYPA)

HSP 1 Score: 71.6 bits (174), Expect = 9.240e-12
Identity = 48/142 (33.80%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:    1 EAALLERLGVKLVGRAVFFVDHVFPRVEELPGGLRDAAMVEALLAAPRLSQQHERFRSALAELEFVPTSGKANTLVRPRQTFDPEVPELPALLPESKF-PGGVFRHKDVLAALRPLGLQGALGWPGLVEAAASVEAMARSEP 423
            E  L   LGV  + RAVF+ DH+F  + ++P  +   AM+  +L   +  ++     + ++ L FV T+     L  P + +DP VPEL  LL +  F P G F    VL  L  LGL+ +LG  GL+++A SV  ++   P
Sbjct: 2275 EEVLAVYLGVTKLNRAVFYRDHLFSNMAQIPVAVTTRAMLAIILDYSKFVEEDPALVNVMSSLPFVLTA--QGILEAPERLYDPRVPELQTLLNKDVFFPSGDFADDAVLDVLVELGLKRSLGHSGLLDSARSVAMISSQNP 2414
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1439.3433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LJG5_ECTSI2.860e-6481.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4B9_9PHAE1.320e-6381.16UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D6LKX8_VIGUN5.650e-1337.80Histidine kinase-like ATPase n=1 Tax=Vigna unguicu... [more]
A0A151R3C6_CAJCA1.440e-1235.56Sacsin n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A1... [more]
UPI00098DA6D21.440e-1235.56sacsin isoform X1 n=2 Tax=Cajanus cajan TaxID=3821... [more]
A0A2K1K3C6_PHYPA9.240e-1233.80RING-type domain-containing protein n=3 Tax=Physco... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1439contigH-canaliculatus_F_contig1439:24137..25067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue8.8e-56
Seed eggNOG ortholog2880.D8LJG5
KEGG koko:K17592
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
EggNOG free text desc.negative regulation of inclusion body assembly
EggNOG OGs28IDA@1,2QQPY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.4774349-CDS-H-canaliculatus_F_contig1439:24136..243491622929193.4774349-CDS-H-canaliculatus_F_contig1439:24136..24349Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1439 24137..24349 +
1696845712.1491597-CDS-H-canaliculatus_F_contig1439:24136..243491696845712.1491597-CDS-H-canaliculatus_F_contig1439:24136..24349Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1439 24137..24349 +
1622929193.4965913-CDS-H-canaliculatus_F_contig1439:24854..250671622929193.4965913-CDS-H-canaliculatus_F_contig1439:24854..25067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1439 24855..25067 +
1696845712.16038-CDS-H-canaliculatus_F_contig1439:24854..250671696845712.16038-CDS-H-canaliculatus_F_contig1439:24854..25067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1439 24855..25067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1439.3433.1prot_H-canaliculatus_F_contig1439.3433.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1439 24137..25067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1439.3433.1

>prot_H-canaliculatus_F_contig1439.3433.1 ID=prot_H-canaliculatus_F_contig1439.3433.1|Name=mRNA_H-canaliculatus_F_contig1439.3433.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=142bp
EAALLERLGVKLVGRAVFFVDHVFPRVEELPGGLRDAAMVEALLAAPRLS
QQHERFRSALAELEFVPTSGKANTLVRPRQTFDPEVPELPALLPESKFPG
GVFRHKDVLAALRPLGLQGALGWPGLVEAAASVEAMARSEPG
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mRNA from alignment at H-canaliculatus_F_contig1439:24137..25067+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1439.3433.1 ID=mRNA_H-canaliculatus_F_contig1439.3433.1|Name=mRNA_H-canaliculatus_F_contig1439.3433.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=931bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1439:24137..25067+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGCGGCGCTGCTGGAACGGCTCGGGGTGAAGCTCGTGGGGCGAGCGGT
TTTCTTCGTGGACCACGTTTTTCCGAGGGTGGAGGAGCTGCCGGGCGGTC
TGAGGGACGCGGCGATGGTGGAGGCGCTCCTGGCTGCGCCGAGGCTTTCG
CAGCAGCACGAACGCTTCAGGAGCGCCCTGGCGGAGCTGGAGTTTGTGCC
GACCAGCGGCAAGGTGAGCTGCTGCTTTCGTAACGTCTCATCTGGTGCCG
CTTTTCCTTAGTTTTCCGGTGCGGGGACCTCTTTGGTCTCCTCTGTCCGT
TCGATGTGGCTGTTCCGAGCTGGCGCACGGGAAGTGGTCCAAAAGCCCCT
TTCTACTGCTTGCAGGGACCTGTGTGCCGTAATGTGCACGTGCTTTGTGT
TTCTGACGAGATAATCTACGTTTGATGTTGCTTACGCACCCTCGCGCGCT
CGGCGCTTGCCGGCGACAGGACGATGAGGAGTCTTCGACAACGCTCCTTC
TCCCCGCCCGATGTCACGATCATATGTATGATACCACCCCCCCGCAACCT
CTTCAAAATCCATCACCCTCTTGTCTCCCCTTGCGATCCATTTCGCCCGC
CCGGTCTGTCCATACACGTTCCTCGCCAACTGAACGCTCGCGCGCACGCC
CCCTCTCCCCCCTCCCCCCCCCGAAAAATAATGCCTGACCGACGACCACG
TGAACGGCCACGAATAAGGCCAACACCTTGGTTCGCCCGCGACAAACTTT
CGACCCCGAAGTGCCCGAGCTCCCCGCGCTGCTCCCGGAGTCGAAATTCC
CGGGTGGCGTTTTCCGGCACAAGGACGTGCTTGCCGCTCTGCGCCCGCTG
GGCCTTCAGGGCGCGCTAGGTTGGCCCGGGTTGGTGGAGGCTGCGGCGTC
TGTGGAGGCGATGGCGAGGAGCGAGCCCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1439:24137..25067+

>mRNA_H-canaliculatus_F_contig1439.3433.1 ID=mRNA_H-canaliculatus_F_contig1439.3433.1|Name=mRNA_H-canaliculatus_F_contig1439.3433.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=852bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1439:24137..25067+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGCGGCGCTGCTGGAACGGCTCGGGGTGAAGCTCGTGGGGCGAGCGGT
TTTCTTCGTGGACCACGTTTTTCCGAGGGTGGAGGAGCTGCCGGGCGGTC
TGAGGGACGCGGCGATGGTGGAGGCGCTCCTGGCTGCGCCGAGGCTTTCG
CAGCAGCACGAACGCTTCAGGAGCGCCCTGGCGGAGCTGGAGTTTGTGCC
GACCAGCGGCAAGGAGGCGGCGCTGCTGGAACGGCTCGGGGTGAAGCTCG
TGGGGCGAGCGGTTTTCTTCGTGGACCACGTTTTTCCGAGGGTGGAGGAG
CTGCCGGGCGGTCTGAGGGACGCGGCGATGGTGGAGGCGCTCCTGGCTGC
GCCGAGGCTTTCGCAGCAGCACGAACGCTTCAGGAGCGCCCTGGCGGAGC
TGGAGTTTGTGCCGACCAGCGGCAAGGCCAACACCTTGGTTCGCCCGCGA
CAAACTTTCGACCCCGAAGTGCCCGAGCTCCCCGCGCTGCTCCCGGAGTC
GAAATTCCCGGGTGGCGTTTTCCGGCACAAGGACGTGCTTGCCGCTCTGC
GCCCGCTGGGCCTTCAGGGCGCGCTAGGTTGGCCCGGGTTGGTGGAGGCT
GCGGCGTCTGTGGAGGCGATGGCGAGGAGCGAGCCCGGCGCCAACACCTT
GGTTCGCCCGCGACAAACTTTCGACCCCGAAGTGCCCGAGCTCCCCGCGC
TGCTCCCGGAGTCGAAATTCCCGGGTGGCGTTTTCCGGCACAAGGACGTG
CTTGCCGCTCTGCGCCCGCTGGGCCTTCAGGGCGCGCTAGGTTGGCCCGG
GTTGGTGGAGGCTGCGGCGTCTGTGGAGGCGATGGCGAGGAGCGAGCCCG
GC
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