mRNA_H-canaliculatus_F_contig1439.3432.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1439.3432.1
Unique NamemRNA_H-canaliculatus_F_contig1439.3432.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Match: D7G825_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G825_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 3.730e-115
Identity = 159/166 (95.78%), Postives = 164/166 (98.80%), Query Frame = 1 
Query:    1 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMVDFIKYPETVRRYPDQV 498
            GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHG +GLPS ALAQFQGPALLV+NDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAF+SAGKWCSFDPQAKFLPNVNP+NPGKMVDFIKYPETV+RYPDQV
Sbjct:    9 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGTEGLPSLALAQFQGPALLVFNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFVSAGKWCSFDPQAKFLPNVNPANPGKMVDFIKYPETVKRYPDQV 174
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Match: A0A329RM56_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RM56_9STRA)

HSP 1 Score: 257 bits (657), Expect = 2.350e-76
Identity = 121/166 (72.89%), Postives = 139/166 (83.73%), Query Frame = 1 
Query:    1 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMVDFIKYPETVRRYPDQV 498
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD RQH A GL    LA FQGP+LLV+N+  F+D DF+SIQRIGDSLKKD SKG KTGRFG+GFNSVYH+T+LPAF+S  +   FDPQA  LPNVNPSNPGKM+D+I +P+ V  +PDQ+
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHAATGLAYEKLASFQGPSLLVHNNATFSDADFQSIQRIGDSLKKDNSKGWKTGRFGVGFNSVYHVTDLPAFVSGSQLVFFDPQACHLPNVNPSNPGKMIDYIAHPDLVSNFPDQI 174
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Match: W2NNW2_PHYPR (UBA domain-containing protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NNW2_PHYPR)

HSP 1 Score: 256 bits (655), Expect = 4.240e-76
Identity = 121/166 (72.89%), Postives = 138/166 (83.13%), Query Frame = 1 
Query:    1 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMVDFIKYPETVRRYPDQV 498
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD RQH A GL    LA FQGP+LLV+N+  F+D DF+SIQRIGDSLKKD SKG KTGRFG+GFNSVYH+T+LPAF+S  +   FDPQA  LPNVNPSNPGKM+D+I +P  V  +PDQ+
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHAATGLAYEKLASFQGPSLLVHNNATFSDADFQSIQRIGDSLKKDNSKGWKTGRFGVGFNSVYHVTDLPAFVSGSQLVFFDPQACHLPNVNPSNPGKMIDYIAHPNLVSNFPDQI 174
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Match: G4YZA0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZA0_PHYSP)

HSP 1 Score: 255 bits (651), Expect = 1.510e-75
Identity = 119/166 (71.69%), Postives = 137/166 (82.53%), Query Frame = 1 
Query:    1 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMVDFIKYPETVRRYPDQV 498
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD RQH + GL    L  FQGP+LLV+N+  FTD DF+SIQRIGDSLKKD SKG KTGRFG+GFNSVYH+T+LP F+S  +   FDPQA  LPNVNPSNPGKM+D+I +P+ V  +PDQ+
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHASTGLAYEKLGSFQGPSLLVHNNATFTDADFQSIQRIGDSLKKDNSKGWKTGRFGVGFNSVYHVTDLPTFVSGSQLVFFDPQACHLPNVNPSNPGKMIDYIAHPDLVNNFPDQI 174
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Match: A0A8K1CIU3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIU3_PYTOL)

HSP 1 Score: 254 bits (650), Expect = 2.050e-75
Identity = 121/165 (73.33%), Postives = 136/165 (82.42%), Query Frame = 1 
Query:    1 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMVDFIKYPETVRRYPDQ 495
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV+ CLD RQH +D L    L  FQGP+LLV+N+  FTD DF+SIQRIGDSLKKDTSKG KTGRFG+GFNSVYHLT+LPAF+S      FDPQA  LPNVNPSNPGKM++F  +PE V  +PDQ
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVQFCLDHRQHASDNLAYRKLESFQGPSLLVFNNATFTDADFQSIQRIGDSLKKDTSKGWKTGRFGVGFNSVYHLTDLPAFVSGSNMVFFDPQACHLPNVNPSNPGKMINFASHPELVASFPDQ 173
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Match: A0A484EHX4_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHX4_BRELC)

HSP 1 Score: 251 bits (642), Expect = 2.450e-74
Identity = 120/166 (72.29%), Postives = 135/166 (81.33%), Query Frame = 1 
Query:    1 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMVDFIKYPETVRRYPDQV 498
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LC+D RQH A GL    LA FQGP+LL+YN+  F+D DF SIQRIGDSLKKD S G KTGRFG+GFNSVYH+T+LPAF+S  +   FDPQA  LPNVNPSNPGKMVDFI +P  V  Y +Q+
Sbjct:    8 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVSLCIDYRQHAATGLAYEKLASFQGPSLLIYNNATFSDADFLSIQRIGDSLKKDNSNGWKTGRFGVGFNSVYHMTDLPAFVSGSQLVFFDPQACHLPNVNPSNPGKMVDFIAHPNLVSNYSNQM 173
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Match: A0A833TEE0_PHYIN (UBA domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TEE0_PHYIN)

HSP 1 Score: 251 bits (641), Expect = 3.170e-74
Identity = 118/166 (71.08%), Postives = 137/166 (82.53%), Query Frame = 1 
Query:    1 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMVDFIKYPETVRRYPDQV 498
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD RQH A GL    L+ FQGP+LLV+N+  F+D DF+SIQRIGDSLKKD SKG KTGRFG+GFNSVYH+T+LP F+S  +   FDPQA  LPNVNPSNPGKM+D+I +P+ V  +P Q+
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHAATGLAYEKLSSFQGPSLLVHNNATFSDADFQSIQRIGDSLKKDNSKGWKTGRFGVGFNSVYHVTDLPTFVSGSQLVFFDPQACHLPNVNPSNPGKMIDYIAHPDLVDNFPAQI 174
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Match: A0A5D6XM38_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM38_9STRA)

HSP 1 Score: 249 bits (636), Expect = 1.570e-73
Identity = 119/165 (72.12%), Postives = 134/165 (81.21%), Query Frame = 1 
Query:    1 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMVDFIKYPETVRRYPDQ 495
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV  CLD RQHG + L    L  FQGPALLV+N+  FTD DF SIQRIGDSLKKD+SKG KTGRFG+GFNSVYH+T+LPAF+S      FDPQA  LPNVNPSNPGKM++F+ + E V  +PDQ
Sbjct:   12 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNFCLDRRQHGTERLAYTKLEAFQGPALLVHNNATFTDADFESIQRIGDSLKKDSSKGWKTGRFGVGFNSVYHVTDLPAFVSGSHLVFFDPQACHLPNVNPSNPGKMINFLSHSELVTSFPDQ 176
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Match: A0A6A3FKD4_9STRA (UBA domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FKD4_9STRA)

HSP 1 Score: 249 bits (635), Expect = 2.090e-73
Identity = 117/166 (70.48%), Postives = 136/166 (81.93%), Query Frame = 1 
Query:    1 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMVDFIKYPETVRRYPDQV 498
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD RQH + GL    L  FQGP+LLV+N+  FTD DF+SIQRIGDSLKKD SKG KTGRFG+GFNSVYH+T+LP F+S  +   FDPQA  LPNVNPSNPGKM+D+I + + V  +P+Q+
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHASTGLAYEKLESFQGPSLLVHNNATFTDADFQSIQRIGDSLKKDNSKGWKTGRFGVGFNSVYHVTDLPTFVSGSQLVFFDPQACHLPNVNPSNPGKMIDYIAHSDLVDNFPNQI 174
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Match: A0A6A4E802_9STRA (RING-type domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E802_9STRA)

HSP 1 Score: 249 bits (635), Expect = 2.130e-73
Identity = 117/166 (70.48%), Postives = 136/166 (81.93%), Query Frame = 1 
Query:    1 GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLRQHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKGGKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMVDFIKYPETVRRYPDQV 498
            G+DFGQKIDLTVRIREILRNYPEGTSI KE+VQNADDAGA EV LCLD RQH + GL    L  FQGP+LLV+N+  FTD DF+SIQRIGDSLKKD SKG KTGRFG+GFNSVYH+T+LP F+S  +   FDPQA  LPNVNPSNPGKM+D+I + + V  +P+Q+
Sbjct:    9 GDDFGQKIDLTVRIREILRNYPEGTSIFKEMVQNADDAGATEVNLCLDYRQHASTGLAYEKLESFQGPSLLVHNNATFTDADFQSIQRIGDSLKKDNSKGWKTGRFGVGFNSVYHVTDLPTFVSGSQLVFFDPQACHLPNVNPSNPGKMIDYIAHSDLVDNFPNQI 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1439.3432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G825_ECTSI3.730e-11595.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A329RM56_9STRA2.350e-7672.89Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
W2NNW2_PHYPR4.240e-7672.89UBA domain-containing protein n=1 Tax=Phytophthora... [more]
G4YZA0_PHYSP1.510e-7571.69Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A8K1CIU3_PYTOL2.050e-7573.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484EHX4_BRELC2.450e-7472.29Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A833TEE0_PHYIN3.170e-7471.08UBA domain-containing protein n=1 Tax=Phytophthora... [more]
A0A5D6XM38_9STRA1.570e-7372.12Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A3FKD4_9STRA2.090e-7370.48UBA domain-containing protein n=4 Tax=Phytophthora... [more]
A0A6A4E802_9STRA2.130e-7370.48RING-type domain-containing protein n=6 Tax=Phytop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1439contigH-canaliculatus_F_contig1439:17522..19170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.6
Seed ortholog evalue2e-88
Seed eggNOG ortholog2880.D7G825
KEGG koko:K17592
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
EggNOG free text desc.negative regulation of inclusion body assembly
EggNOG OGs28IDA@1,2QQPY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistidine kinase-like ATPase, C-terminal domain
Ec32 orthologEc-06_009900.1
Exons3
Model size498
Cds size498
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1439.3432.1prot_H-canaliculatus_F_contig1439.3432.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1439 17522..19170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.373392-CDS-H-canaliculatus_F_contig1439:17521..177721622929193.373392-CDS-H-canaliculatus_F_contig1439:17521..17772Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1439 17522..17772 +
1696845712.1097443-CDS-H-canaliculatus_F_contig1439:17521..177721696845712.1097443-CDS-H-canaliculatus_F_contig1439:17521..17772Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1439 17522..17772 +
1622929193.3901594-CDS-H-canaliculatus_F_contig1439:18279..183381622929193.3901594-CDS-H-canaliculatus_F_contig1439:18279..18338Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1439 18280..18338 +
1696845712.121933-CDS-H-canaliculatus_F_contig1439:18279..183381696845712.121933-CDS-H-canaliculatus_F_contig1439:18279..18338Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1439 18280..18338 +
1622929193.4183843-CDS-H-canaliculatus_F_contig1439:18982..191701622929193.4183843-CDS-H-canaliculatus_F_contig1439:18982..19170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1439 18983..19170 +
1696845712.1372209-CDS-H-canaliculatus_F_contig1439:18982..191701696845712.1372209-CDS-H-canaliculatus_F_contig1439:18982..19170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1439 18983..19170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1439.3432.1

>prot_H-canaliculatus_F_contig1439.3432.1 ID=prot_H-canaliculatus_F_contig1439.3432.1|Name=mRNA_H-canaliculatus_F_contig1439.3432.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=166bp
GEDFGQKIDLTVRIREILRNYPEGTSILKELVQNADDAGAREVRLCLDLR
QHGADGLPSPALAQFQGPALLVYNDGVFTDTDFRSIQRIGDSLKKDTSKG
GKTGRFGIGFNSVYHLTELPAFISAGKWCSFDPQAKFLPNVNPSNPGKMV
DFIKYPETVRRYPDQV
back to top

mRNA from alignment at H-canaliculatus_F_contig1439:17522..19170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1439.3432.1 ID=mRNA_H-canaliculatus_F_contig1439.3432.1|Name=mRNA_H-canaliculatus_F_contig1439.3432.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1649bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1439:17522..19170+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGAAGACTTCGGTCAAAAGATCGACCTGACTGTCCGGATCAGGGAGAT
CCTGCGCAACTATCCTGAGGGGACGTCGATCCTGAAGGAGCTCGTGCAGA
ACGCGGACGATGCCGGCGCGCGGGAGGTGCGCCTCTGCCTCGACCTTCGG
CAGCACGGGGCGGACGGGCTTCCTAGCCCAGCCCTGGCGCAGTTCCAGGG
GCCGGCTCTGCTGGTGTACAATGACGGAGTTTTCACGGACACGGACTTCA
GGTAGGTTACTTCCTACGTCTTGTCTTGCCTCGGAGCAGTGGAGCGGTAC
ATCCATCGTGGGAGAGAGAGTTTGCCTTGGCATGTGCATCATGCCTTTGC
GCGTCTCTTTTCGGGCGGCGGGGAGCACCGCAAGGAAGAGGTAACGGCGT
GCTTGCCCTGGTGTGCGCGGACAGGAAAAAGTGCGGATGCTGCTGGAATC
GGCACATGTGGAGGACACGAGGGTGCTCGTTGGTTCCGCACGTTTGACGT
GTGCGCCTGTCCGTAGTGCCGAGTGATGGAGTACTCGTTTAAGGACGTGT
ACGAAGAGACCGTGAACCGTAGGCTGCTCAGGCCCAAGAGTCAGAGAGGT
TGTTGGATTGCCGCCTTTTTAAGGCATCAAGGTGAACCTCCTTGTTGCGA
CCCAATTCATGCCCCTGGTTAATACGCAACAATTTTGCTGAACCACTGTT
TTCTGCTACGACGTTGCTTGCGCCGGATATGCCGCATGCTGCTACTGCTG
ACGTGCAGGTCAATCCAGAGGATCGGAGACTCCCTCAAGAAGGACACGTC
GAAGGGCGGGAAAACAGGTACATAAATACGTCCGGCTGGTCGTTCCCTGT
CGCATTCTGCCATTTGTATAACCACCCCCTGTTCCGCTGCCGTACTGGCC
AGTTTAAATGCACGGTGGTGTTGCTGAGGAAAGCCGTGTGTTGAATGGGC
GGAGCGGCATCGGTCAAGCCGACCCTTCTCCAGAGGCTTTCGGTGCTGTA
CGCGCTCGTTCCTTCAGGTGTTTTACGTGATACCCTCGCGCCCCCCTCAG
AAGTCGCCGCCAAAACGCCTGAAATGGCGTGTTCCCGTCCACCGGGTCCC
AACGGTTGGAAGTGCGGGAAGTGTTGCTGTGATTACTCGGATGGGGTTGT
CGCAAACTATCAGGACCTTGGTCGCAACCTAGACACACCACGGCTGACCG
CAAGCCAGGTAGGGTAGAGTGCGTGAAAAGGAATGACACACACAACCCTA
CATACGTGAAACACGTGTACGCATTTCCCAAGCATCGCTGGGGCTACAGT
ATGACAGTCCAAGGTGTTGTCATAACGCCCTTTTTTTAAGTTGCCACGGC
CTATCCCTCCTTGCACACGTCCCCACTGTCTTTGTTTTCTCACCCTGTCG
TGATCTCTGCCCTCCGTCTTGTCAAAATAAATCATGCGCCCGTTGTTCCG
GACGTCTCCAGGCCGGTTCGGGATCGGCTTCAACAGCGTGTACCACCTCA
CGGAGCTCCCGGCCTTCATCTCCGCGGGAAAGTGGTGCAGCTTCGACCCG
CAGGCCAAGTTTCTCCCGAACGTCAACCCGTCCAACCCGGGAAAGATGGT
GGACTTCATCAAGTATCCTGAGACCGTCCGTCGCTACCCGGATCAGGTA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1439:17522..19170+

>mRNA_H-canaliculatus_F_contig1439.3432.1 ID=mRNA_H-canaliculatus_F_contig1439.3432.1|Name=mRNA_H-canaliculatus_F_contig1439.3432.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=996bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1439:17522..19170+ (Hapterophycus canaliculatus Oshoro5f female)
GGTGAAGACTTCGGTCAAAAGATCGACCTGACTGTCCGGATCAGGGAGAT
CCTGCGCAACTATCCTGAGGGGACGTCGATCCTGAAGGAGCTCGTGCAGA
ACGCGGACGATGCCGGCGCGCGGGAGGTGCGCCTCTGCCTCGACCTTCGG
CAGCACGGGGCGGACGGGCTTCCTAGCCCAGCCCTGGCGCAGTTCCAGGG
GCCGGCTCTGCTGGTGTACAATGACGGAGTTTTCACGGACACGGACTTCA
GGGTGAAGACTTCGGTCAAAAGATCGACCTGACTGTCCGGATCAGGGAGA
TCCTGCGCAACTATCCTGAGGGGACGTCGATCCTGAAGGAGCTCGTGCAG
AACGCGGACGATGCCGGCGCGCGGGAGGTGCGCCTCTGCCTCGACCTTCG
GCAGCACGGGGCGGACGGGCTTCCTAGCCCAGCCCTGGCGCAGTTCCAGG
GGCCGGCTCTGCTGGTGTACAATGACGGAGTTTTCACGGACACGGACTTC
AGGTCAATCCAGAGGATCGGAGACTCCCTCAAGAAGGACACGTCGAAGGG
CGGGAAAACAGGTCAATCCAGAGGATCGGAGACTCCCTCAAGAAGGACAC
GTCGAAGGGCGGGAAAACAGGCCGGTTCGGGATCGGCTTCAACAGCGTGT
ACCACCTCACGGAGCTCCCGGCCTTCATCTCCGCGGGAAAGTGGTGCAGC
TTCGACCCGCAGGCCAAGTTTCTCCCGAACGTCAACCCGTCCAACCCGGG
AAAGATGGTGGACTTCATCAAGTATCCTGAGACCGTCCGTCGCTACCCGG
ATCAGGTAGCCGGTTCGGGATCGGCTTCAACAGCGTGTACCACCTCACGG
AGCTCCCGGCCTTCATCTCCGCGGGAAAGTGGTGCAGCTTCGACCCGCAG
GCCAAGTTTCTCCCGAACGTCAACCCGTCCAACCCGGGAAAGATGGTGGA
CTTCATCAAGTATCCTGAGACCGTCCGTCGCTACCCGGATCAGGTA
back to top