mRNA_H-canaliculatus_F_contig1438.3429.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1438.3429.1 vs. uniprot
Match: D7FHZ2_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ2_ECTSI) HSP 1 Score: 657 bits (1694), Expect = 3.180e-223 Identity = 440/822 (53.53%), Postives = 519/822 (63.14%), Query Frame = 1
Query: 1 AGQKRDLVVKQAERVAHFMVVADVSEIEEKLSDDEREYKAKAFERQEEQRRRDENLQKAAVENVVSHASGQLSGALLGRMQGIAKLHGSAKSAVKLELGQLAKAGK-SGKDTSAGGKSSASVHRCKVLKDGDLVPDDTVDDGEQGQVKEVLDGRGLDLSYLWLLDSRYLGRRSLKPASPMMDSSIAAAKQQGTSRNTQGRKQDDIQDEDKSGENDDDGAETPRDGSGDEARTRGSSKSMDGRESADEGDAEVNND---GRGKSQVGSL---------AVDLDRKIAPAAEPLSHEKTKKRSEGKGXXXXXXDVGEDEPQAEKPQQATKKRGRLVPGSLVLTCVSATGMPNTEKGAFSKQDPYLVVKWGEQEVRTSAKRDSGKDCSWPKEELALIVRTKKHLQEPIQVEVWNDNAGDKKPSPDVLIGKGDIPVKHLALKAPAAPSSTIGVGGKSGKSSGAERADMKNSGRVNRRGGDFTDDEGGSEGLVVTVGLIPGEKRRPKKTNVTAGTVTLTLEYTPPRRKPRKVTKEDAXXXXXXG-------KAREGGDDRTATDTDDDNLSSTAGLSALSSETMRNHLSIQELGAAISQALEGFDIREELSKIECLEYAQGIINEGFGQRGAFADIQEEHLIRHPIYVPRGARKRILALAGLIRLQMKAEKDKSTKAMEIITKDSDI-EGAFEGGYTVDGVAFFDTLAAMNASLEEDGVKADLAAAKELV----EFHPRPKSPKPRSAAKEKINLWLDNADRFNNGAIPREAVKTVMRDAFVLNGLPSPRESDAKISLQRAFIDEQGLQIDRRRLGIELEHLIRREL 2391
AGQ R+LVVKQAERVA +VAD+S++EE++SDDEREY+AKA ERQ+E +AA++NVVS AS +LSG L RMQG+AKLH SAKSA+K ELGQLA GK +GK T A G SS SVHR K LKD DLVPDD+VD+GEQ +V++VL G GLDLSYLW++D+ + RS K S SS A K T+ + Q +Q D+ SG D +G E + GSG A + K DGR D+ + + D G G++ VGSL A ++ AE + K+ G G D ++PQ +K ++GRLVPGSLVLT VSA +P+TEKG FSKQDPYLV +WGEQEVRTSAKRDSGK CSW KEE+AL+VRTKK LQEPI++EVWNDNAGDKKPSPDVLIGKG +PVKHLA PAAP XXXXXX +AR GD RTAT+TDDD LSS AGLSA S + RNHLS+QELGA +SQ LEGF+IREEL KIE + QGIINEGFGQRGAFA IQEEHL+ HPIY PRGARKR+LALA LIRLQM+AEK+K T +I S A E GYT DGVAFFDTLAAMN SLEED K +L E + P+PK PKPRSAAKEK+++WLD+ADRF NGAIPREAVKTV+RDA +LNGLPSPRESDAKISLQ A D+QGL+ DR +LG+ELEHLIRREL
Sbjct: 9 AGQTRELVVKQAERVARHTLVADISKLEERISDDEREYEAKAAERQKEXXXXXXXXXEAAIQNVVSGASSKLSGNLFDRMQGLAKLHESAKSAMKFELGQLANVGKGAGKATPANGGSSTSVHRHKTLKDDDLVPDDSVDNGEQEEVEDVLGGEGLDLSYLWVVDAGKVLSRSNKSTSDTEGSSHTA-KGGTTTDSEQEAEQRRPGDDRVSGNGDAEGVENEQ-GSGAHA----AKKEGDGRLPLDKASGKKSRDATNGGGENLVGSLELGDGGGENAQPSIAQVDTKAEKRARNTEKRGEAGGGRAGDNGDARPEQPQVKK------RKGRLVPGSLVLTSVSAADLPDTEKGVFSKQDPYLVARWGEQEVRTSAKRDSGKACSWVKEEVALLVRTKKQLQEPIEIEVWNDNAGDKKPSPDVLIGKGSLPVKHLASADPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARREGD-RTATETDDDALSSIAGLSAWSIQGKRNHLSVQELGAVMSQTLEGFNIREELGKIE---FVQGIINEGFGQRGAFAYIQEEHLVGHPIYAPRGARKRLLALAELIRLQMRAEKEKVTAVEDIAEDGSPFWSPALERGYTTDGVAFFDTLAAMNYSLEEDRAKLELTKTNEFTTQQQDAPPQPKPPKPRSAAKEKVDVWLDHADRFKNGAIPREAVKTVIRDALLLNGLPSPRESDAKISLQHASTDDQGLRFDRSKLGVELEHLIRREL 814
BLAST of mRNA_H-canaliculatus_F_contig1438.3429.1 vs. uniprot
Match: A0A835Z8I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8I7_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 8.960e-6 Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 1
Query: 1663 SSETMRNHLSIQELGAAISQAL-----------EGFDIREELSKIECLEYAQGIINEGFGQRGAFADIQEEHLIRHPIYVPRGARKRILALAGLIRLQMKAEKDKSTKAMEIITKDSDIEGAFEGGYTVDGVAFFDTLAAMNASL 2064
SS + S++E AA++Q E F + EL + C +A+ + G+ QRGAFA + E L P+Y+PR AR++ILA A + + + + ++ D +T+DGVAFF T A M A++
Sbjct: 151 SSRLLSQQSSLRETRAALAQTAAEAAISAAREQENFSLAAELEAVGCAAHAERLAQCGYAQRGAFAALTEADLAGEPLYLPRAARRQILARADAVAQAAQH----AASLVRTGLQELDHRATAAEKFTLDGVAFFATRADMAAAV 291
BLAST of mRNA_H-canaliculatus_F_contig1438.3429.1 vs. uniprot
Match: A0A7S2DG32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DG32_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.460e-5 Identity = 36/114 (31.58%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 1729 EGFDIREELSKIECLEYAQGIINEGFGQRGAFADIQEEHLIRHPIYVPRGARKRILALAGLIRLQMKAEKDKSTKAMEIITKDSDIEGAFEGGYTVDGVAFFDTLAAMNASLEE 2070
E FD+ +L I C Y + GF QRGAFA + + L +++P+G RK+ILALA + + + ++E ++ +++ + K + T+DG FF T +N S E
Sbjct: 300 EAFDLETDLDYIGCGHYTAKLAARGFDQRGAFARMTDNELAGDGLWIPKGNRKKILALAAMYQFEDESEAARNESSVDKMGKT-----ITKPEVTIDGENFFSTTDKLNRSWRE 408
BLAST of mRNA_H-canaliculatus_F_contig1438.3429.1 vs. uniprot
Match: A0A836CPQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPQ5_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 3.790e-5 Identity = 38/105 (36.19%), Postives = 53/105 (50.48%), Query Frame = 1
Query: 967 GSLVLTCVSATGMPNTEKGA----FSKQDPYLVVKWGEQEVRTSAKRDSGKDCSWPKEELAL-IVRTKKHLQEPIQVEVWNDNAGDKKPSPDVLIGKGDIPVKHL 1266
G+ V T + A G+ TE A QDPY+V++ G E RTSAKR +G + SW E + L R + + + VE+WN N D LIG+ +P L
Sbjct: 824 GTFVFTSLQAHGLAETEVSARLLGIGGQDPYVVLRLGASEGRTSAKRGAGAEASWDGEAVRLDCARAELGDGDAVTVELWNANV-----LKDDLIGRAAVPPAEL 923 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1438.3429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1438.3429.1 >prot_H-canaliculatus_F_contig1438.3429.1 ID=prot_H-canaliculatus_F_contig1438.3429.1|Name=mRNA_H-canaliculatus_F_contig1438.3429.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=799bp AGQKRDLVVKQAERVAHFMVVADVSEIEEKLSDDEREYKAKAFERQEEQRback to top mRNA from alignment at H-canaliculatus_F_contig1438:14955..24398+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1438.3429.1 ID=mRNA_H-canaliculatus_F_contig1438.3429.1|Name=mRNA_H-canaliculatus_F_contig1438.3429.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1438:14955..24398+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1438:14955..24398+ >mRNA_H-canaliculatus_F_contig1438.3429.1 ID=mRNA_H-canaliculatus_F_contig1438.3429.1|Name=mRNA_H-canaliculatus_F_contig1438.3429.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4794bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1438:14955..24398+ (Hapterophycus canaliculatus Oshoro5f female)back to top |