mRNA_H-canaliculatus_F_contig14371.3420.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14371.3420.1
Unique NamemRNA_H-canaliculatus_F_contig14371.3420.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Match: W7TJY5_9STRA (Phospholipid-translocating P-type atpase domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJY5_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.490e-37
Identity = 60/92 (65.22%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    7 RINKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRY 282
            R+ K   +C++ V CR+SPDQKR +VHL+K+N P  R L++GDGANDVPMIQ AHVGVGI+G EG+QAVNASDY+++QFRFL+ LLL HGR+
Sbjct:  126 RLLKLTRICKSVVACRVSPDQKRSIVHLVKNNEPACRALSIGDGANDVPMIQEAHVGVGIAGMEGMQAVNASDYAISQFRFLRSLLLAHGRW 217
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BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Match: A0A6A4E1R7_9STRA (Phospholipid-transporting ATPase n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E1R7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.100e-35
Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 PARINKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRYISAR 294
            P  + K A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+   R
Sbjct:  934 PELLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEVRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRWNYVR 1031
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BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Match: W2HMC0_PHYPR (Phospholipid-transporting ATPase n=14 Tax=Phytophthora TaxID=4783 RepID=W2HMC0_PHYPR)

HSP 1 Score: 137 bits (345), Expect = 2.870e-35
Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 PARINKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRYISAR 294
            P  + K A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+   R
Sbjct:  923 PELLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEMRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRWNYVR 1020
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BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Match: H3GP37_PHYRM (Phospholipid-transporting ATPase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP37_PHYRM)

HSP 1 Score: 137 bits (345), Expect = 2.870e-35
Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 PARINKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRYISAR 294
            P  + K A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+   R
Sbjct:  922 PELLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRWNYVR 1019
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BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Match: A0A7S4DCU9_HETAK (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCU9_HETAK)

HSP 1 Score: 135 bits (340), Expect = 5.240e-35
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:   28 VCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRYISARRRRCACY 315
            +C+A V CR+SPDQKR++V L+KDN P  R LA+GDGANDV MIQ AHVGVGISGQEGLQAVN+SDY++AQF++L+KLLL HGR+   R  +  CY
Sbjct:  213 LCRAVVACRVSPDQKREMVALVKDNVPGVRALAIGDGANDVAMIQEAHVGVGISGQEGLQAVNSSDYAVAQFKYLRKLLLVHGRWNYRRMSKLVCY 308
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BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Match: A0A225W7A7_9STRA (Phospholipid-transporting ATPase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W7A7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.270e-35
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 PARINKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRYISAR 294
            P  + K A  C A + CR+SP QK QLV L++DNNP  RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+   R
Sbjct:  902 PELLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPKIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRWNYVR 999
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BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Match: A0A2P4Y8V4_9STRA (Phospholipid-transporting ATPase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8V4_9STRA)

HSP 1 Score: 135 bits (341), Expect = 8.100e-35
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 PARINKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRYISAR 294
            P  + K A  C A + CR+SP QK QLV L++DNNP  RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+   R
Sbjct:  259 PDLLLKVAEKCVAVIACRVSPAQKAQLVRLVRDNNPKIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRWNYVR 356
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BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Match: D7G0C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C1_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 9.880e-35
Identity = 62/95 (65.26%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:   31 CQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRYISARRRRCACY 315
            C + +GCR+SPDQKR LV L+++N P  RTL++GDGANDVPMIQ AH+GVGISGQEG+QAVN+SDY++AQF +L+KLLL HGR+   R  R  CY
Sbjct: 1198 CHSVIGCRLSPDQKRALVALVRENVPGTRTLSIGDGANDVPMIQRAHIGVGISGQEGMQAVNSSDYAIAQFAYLRKLLLVHGRWNYRRSSRVVCY 1292
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Match: D0NQA7_PHYIT (Phospholipid-transporting ATPase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NQA7_PHYIT)

HSP 1 Score: 135 bits (341), Expect = 9.950e-35
Identity = 64/98 (65.31%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 PARINKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRYISAR 294
            P  + K A  C A + CR+SP QK QLV L+++NNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+   R
Sbjct:  804 PELLLKVAEKCVAVIACRVSPAQKAQLVRLVRENNPEMRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAIAQFRFLSRLLLVHGRWNYVR 901
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Match: A0A662WRZ8_9STRA (Phospholipid-transporting ATPase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRZ8_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.360e-34
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 PARINKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDVPMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRYISAR 294
            P  +   A  C A + CR+SP QK QLV L++DNNP+ RTLA+GDGANDV MIQAAHVGVGISGQEG+QA N+SDY++AQFRFL +LLL HGR+   R
Sbjct:  936 PELLLSVAEKCVAVIACRVSPAQKAQLVRLVRDNNPEIRTLAIGDGANDVSMIQAAHVGVGISGQEGMQAANSSDYAMAQFRFLSRLLLVHGRWNYVR 1033
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14371.3420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TJY5_9STRA1.490e-3765.22Phospholipid-translocating P-type atpase domain co... [more]
A0A6A4E1R7_9STRA2.100e-3566.33Phospholipid-transporting ATPase n=7 Tax=Phytophth... [more]
W2HMC0_PHYPR2.870e-3566.33Phospholipid-transporting ATPase n=14 Tax=Phytopht... [more]
H3GP37_PHYRM2.870e-3566.33Phospholipid-transporting ATPase n=1 Tax=Phytophth... [more]
A0A7S4DCU9_HETAK5.240e-3566.67Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
A0A225W7A7_9STRA7.270e-3566.33Phospholipid-transporting ATPase n=1 Tax=Phytophth... [more]
A0A2P4Y8V4_9STRA8.100e-3566.33Phospholipid-transporting ATPase n=1 Tax=Phytophth... [more]
D7G0C1_ECTSI9.880e-3565.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D0NQA7_PHYIT9.950e-3565.31Phospholipid-transporting ATPase n=1 Tax=Phytophth... [more]
A0A662WRZ8_9STRA1.360e-3465.31Phospholipid-transporting ATPase n=2 Tax=Nothophyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14371contigH-canaliculatus_F_contig14371:570..1397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue8.7e-30
Seed eggNOG ortholog67593.Physo129570
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
EggNOG free text desc.Phospholipid-translocating ATPase N-terminal
EggNOG OGs3QE12@4776,COG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.7287862-CDS-H-canaliculatus_F_contig14371:569..7501622929191.7287862-CDS-H-canaliculatus_F_contig14371:569..750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14371 570..750 +
1696845711.4361186-CDS-H-canaliculatus_F_contig14371:569..7501696845711.4361186-CDS-H-canaliculatus_F_contig14371:569..750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14371 570..750 +
1622929191.750454-CDS-H-canaliculatus_F_contig14371:1236..13971622929191.750454-CDS-H-canaliculatus_F_contig14371:1236..1397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14371 1237..1397 +
1696845711.447815-CDS-H-canaliculatus_F_contig14371:1236..13971696845711.447815-CDS-H-canaliculatus_F_contig14371:1236..1397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14371 1237..1397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14371.3420.1prot_H-canaliculatus_F_contig14371.3420.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14371 570..1397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14371.3420.1

>prot_H-canaliculatus_F_contig14371.3420.1 ID=prot_H-canaliculatus_F_contig14371.3420.1|Name=mRNA_H-canaliculatus_F_contig14371.3420.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
PARINKFASVCQAFVGCRMSPDQKRQLVHLIKDNNPDARTLAVGDGANDV
PMIQAAHVGVGISGQEGLQAVNASDYSLAQFRFLQKLLLCHGRYISARRR
RCACYGRWCRCWC*
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mRNA from alignment at H-canaliculatus_F_contig14371:570..1397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14371.3420.1 ID=mRNA_H-canaliculatus_F_contig14371.3420.1|Name=mRNA_H-canaliculatus_F_contig14371.3420.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=828bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14371:570..1397+ (Hapterophycus canaliculatus Oshoro5f female)
CCTGCGCGCATTAATAAGTTCGCGAGTGTGTGTCAGGCGTTCGTCGGGTG
CCGCATGTCCCCGGACCAGAAGCGCCAGCTGGTGCACCTCATCAAGGACA
ACAACCCCGATGCCAGGACGCTGGCCGTGGGAGATGGGGCGAACGACGTG
CCGATGATTCAGGCGGCGCATGTCGGCGTGGGTGAGTCCCACAAGTCGCC
TTTTGTGTGTGTGTTTAGTTCATCGGCGAAGATGGAGCTAAATCTGTCGT
TTCTTATGTGCGTTACAAGTAGTTCAAGGAGAGAGGCGAACTCTCGCGCT
TGTTTGTACGTGGTGGTCCTGGTCGTCTAAGTCTTGATGAAATCGTCGCC
GTGAGGGCCTCGATTCTCTCACGAAGACTGCAAGCACGTACCTCGATTTC
GCTTGCGTTGAACGGCGGTGCTTGATCGCGACGAGAAATACCCAGTGCTC
CTTGACTCCGTGTACTCCTGTGGTGTGTCCAGTCGATCCGTTCGATTGTT
TTGTAGAAGGGCATCACCACACAGTAGGAGCACCTCCTAGGATACGCCGT
GTGAGACGTAGCTAGAGGTTCTGCCGAGTTTCAAACAACGAGGGTCCATT
GTGTTCGTTTCTCTCACCACGCACCACACCACCGTGACTTGACGTTTTTT
CATCTCGATTGTTGCAGGCATCAGTGGCCAGGAAGGGCTACAGGCTGTCA
ACGCAAGCGACTACTCCCTCGCACAGTTCCGCTTCCTGCAGAAGCTCCTT
CTCTGCCACGGAAGGTACATTAGCGCTCGTCGCCGTCGTTGCGCTTGTTA
TGGCCGTTGGTGCCGGTGCTGGTGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14371:570..1397+

>mRNA_H-canaliculatus_F_contig14371.3420.1 ID=mRNA_H-canaliculatus_F_contig14371.3420.1|Name=mRNA_H-canaliculatus_F_contig14371.3420.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14371:570..1397+ (Hapterophycus canaliculatus Oshoro5f female)
CCTGCGCGCATTAATAAGTTCGCGAGTGTGTGTCAGGCGTTCGTCGGGTG
CCGCATGTCCCCGGACCAGAAGCGCCAGCTGGTGCACCTCATCAAGGACA
ACAACCCCGATGCCAGGACGCTGGCCGTGGGAGATGGGGCGAACGACGTG
CCGATGATTCAGGCGGCGCATGTCGGCGTGGCCTGCGCGCATTAATAAGT
TCGCGAGTGTGTGTCAGGCGTTCGTCGGGTGCCGCATGTCCCCGGACCAG
AAGCGCCAGCTGGTGCACCTCATCAAGGACAACAACCCCGATGCCAGGAC
GCTGGCCGTGGGAGATGGGGCGAACGACGTGCCGATGATTCAGGCGGCGC
ATGTCGGCGTGGGCATCAGTGGCCAGGAAGGGCTACAGGCTGTCAACGCA
AGCGACTACTCCCTCGCACAGTTCCGCTTCCTGCAGAAGCTCCTTCTCTG
CCACGGAAGGTACATTAGCGCTCGTCGCCGTCGTTGCGCTTGTTATGGCC
GTTGGTGCCGGTGCTGGTGCTGAGCATCAGTGGCCAGGAAGGGCTACAGG
CTGTCAACGCAAGCGACTACTCCCTCGCACAGTTCCGCTTCCTGCAGAAG
CTCCTTCTCTGCCACGGAAGGTACATTAGCGCTCGTCGCCGTCGTTGCGC
TTGTTATGGCCGTTGGTGCCGGTGCTGGTGCTGA
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