mRNA_H-canaliculatus_F_contig1437.3419.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Match: D7G211_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G211_ECTSI) HSP 1 Score: 235 bits (599), Expect = 1.460e-63 Identity = 179/511 (35.03%), Postives = 232/511 (45.40%), Query Frame = 1
Query: 1 MAAAAPGRQSRTPCFFYGKGSCRSGARCRFAHGTSDDHEMLGRASIEETGTAPGQEKHSETTLSTKAXXXXXXXXXXXXXXXACKYFAEGKCERGDACPFLHLVDDSGGSSADGGSGTKDDPITIGEKGKEV--RPPYGDGGGSPAGGAADLGSWADLPARGREGRSSSEASHALPS-----DAAPRTALAEQSGTTQPSFFFPSGPCETFAEQIITGTANADGLFQMPLLSWRWRRARPVPFSCASMTTVSCVLLLPREAAMEVDADSAAXXXXXXXXXXXXXXXXXXXXGGGVSPRGASAARATKERADGSARFAD---ASDGDGGQKDENNSRPPAKETVCVFFLRGRCKFGDGCRFSHDSRESDGSNGSAERGRKVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAEEAALDEAERIQSRRAECGVCLERVQKVRRAEDRVFGILTGCKHVYCLRCINEWRDKSKSHECPECRMPSTWVMPSETLVTDPDRKKRLASEFRKSQEG 1503
MAA + GRQSRT C FY KGSCR GA CRF HGTSD E+ + ET T P Q + + +T S + C++FA+GKC RG +C FLH S SS P G+ G E RP G +P GG A+ RGR ++ + PS +AP A+A S G + + G++ D + + SW + VP T + + + D+ A T A G+A D G E++ + + CVFF RGRC++GD CRFSHD+ E + G R XX AA EAALDEAE+IQSR AECG+CLE+V+K+ + +DRVFGIL C+HVYCL CI EWRDKS +H CPEC + S+ V+PS+TLVTDPDRKKRLA E R+S G
Sbjct: 1 MAAPSSGRQSRTLCTFYEKGSCRYGASCRFTHGTSDSRELRADGAAGETQT-PRQARPTASTSSKEP----------------CRFFAKGKCVRGASCRFLHSATGSDDSS----------PAAAGD-GDETGRRPRSSSGKATPNGGCAE-----GDEDRGRTVTTAKRPARPCPSPGRKPSSAPAAAVAGDSRVRPEGVCVKRGYAGCSSSKRSGGSSGGDEVARRLQRSWTDIVTKDVPMDAGGGTASPASTAITESGSSSEENDNDAEEPIAPARRKLAANAADKRDRNTARXXXXXXXXXTSAPAPGAAAPLDQRRTQPAGGSDSGESDGKGKQAKQACVFFARGRCRYGDRCRFSHDAVEETPAAGGGARXXXXXXXXAGRKEKRGVASEPSSHESEGFGEDEVAAREAALDEAEKIQSRSAECGICLEKVRKLGKVKDRVFGILVSCRHVYCLGCIREWRDKSDNHACPECGLTSSLVIPSKTLVTDPDRKKRLALELRQSPRG 478
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Match: A0A6H5L7F8_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F8_9PHAE) HSP 1 Score: 228 bits (580), Expect = 4.770e-61 Identity = 179/521 (34.36%), Postives = 232/521 (44.53%), Query Frame = 1
Query: 1 MAAAAPGRQSRTPCFFYGKGSCRSGARCRFAHGTSDDHEMLGRASIEETGTAPGQEKHSETTLSTKAXXXXXXXXXXXXXXXACKYFAEGKCERGDACPFLHLVDDSGGSSADGGSGTKDDPITIGEKGKEVRPPYGDGGGSPAGGAADLGSWADLPARGREGRSSSEASHALPSDAAPRTALAEQSGTTQPSFFFPSGPCETFAE------QIITGTANADGLFQMPLLSWRWRRARPVPFSCASMTTVSCVLLLPREAAMEVDADSAAXXXXXXXXXXXXXXXXXXXXGGGVSPRGASAARATKERADGSARFAD--ASDGDGGQKDENNSRPPAKETVCVFFLRGRCKFGDGCRFSHDS------------RESDGSNGSAERGRKVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAEEAALDEAERIQSRRAECGVCLERVQKVRRAEDRVFGILTGCKHVYCLRCINEWRDKSKSHECPECRMPSTWVMPSETLVTDPDRKKRLASEFRKSQEG 1503
MAA + GRQSRT C FY KGSCR GA CRF HGTSD E+ + ET T PGQ K + +T S + C++FA+GKC RG +C F H S S D G D E G+ R G +P GG A+ RG+ ++ ++ PS + T+ A + S P G CE + + G++ D + SW VP T S + + D A P A+A + SA G + E + + ++ CVFF RGRC++GD CRFSHD+ R S G G GRK ++ AA EAALDEAERIQSR AECG+CL +V+K+ + +DRVFGIL CKH+YCL CI EWRDKS +H CPEC + S+ +PS+T VTD DRKKRLA E R+S G
Sbjct: 1 MAAPSSGRQSRTLCTFYEKGSCRYGASCRFTHGTSDSRELRADGAAGETQT-PGQAKPTASTSSKEP----------------CRFFAKGKCVRGASCRFFH----SATGSDDSREGDSD------ETGRRTRSSSGKA--TPNGGCAE-----GDEDRGQAVTTAKRSTRPCPSPSRQSTS-ASAAAVAGDSRVRPEGVCEKRGDAGCCSSKKSGGSSGGDEMTGRLQRSWTDIATEDVPIDAGGGTASSASTASTQSGTSCEENDGDAEEPIAPARRKLAANAADKRDRNTARPAAAAAGNTSAPAPGASAPLGQRRTQPVGGSYRGEIDRKGKQEKQACVFFARGRCRYGDRCRFSHDAVEETPAAGAGGERGSHGGRGGGSVGRKEKRGVASEPSSHASEGFGEDEV---------AAREAALDEAERIQSRSAECGICLGKVRKLGKVKDRVFGILVSCKHIYCLGCIQEWRDKSNNHACPECGLSSSLALPSKTFVTDLDRKKRLALELRQSPRG 477
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Match: A0A2R5GUW3_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUW3_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.390e-18 Identity = 60/171 (35.09%), Postives = 81/171 (47.37%), Query Frame = 1
Query: 1000 CVFFLRGRCKFGDGCRFSHDSRESDGSNGSAERGRKVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAEEAALDEAERIQSRRAECGVCLERVQKVRRAEDRVFGILTGCKHVYCLRCINEWRDKSKS---------HECPECRMPSTWVMPSETLVTDPDRKKRLASEF 1485
C FF+RG C+FG+ CR++H +DG+ G A +Q + E+A+D+ ER SR ECG+CLE + +D FGILTGC H +CL CI WR S CP CR PS +V+P + +V DP RK L E+
Sbjct: 202 CKFFMRGECRFGERCRYTHPG--ADGNGGYAMSPAPHQQSAPM-------------------------SAESAMDQFERQASRELECGICLEVIAS---NKDGRFGILTGCDHAFCLSCIKNWRSTEVSKGDDRKELVRRCPLCREPSYFVVPCDRMVRDPARKNALIEEY 342
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Match: A0A7S2WI76_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WI76_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 4.520e-16 Identity = 57/172 (33.14%), Postives = 79/172 (45.93%), Query Frame = 1
Query: 997 VCVFFLRGRCKFGDGCRFSHDSRESDGSNGSAERGRKVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAEEAALDEAERIQSRRAECGVCLERVQKVRRAEDRVFGILTGCKHVYCLRCINEWRDK-SKSHE--------CPECRMPSTWVMPSETLVTDPDRKKRLASEF 1485
VC FFL G C+FGD CR +H + + + R ++ + E ER S ECG+CLE + + + FGILTGC HV+CL+CI +WR +KS E CP CR PS +V+P + +V DP+RKK L +
Sbjct: 212 VCKFFLAGNCRFGDTCRNTHTVQTQEQQEHTE--------------------------------VISRCEQDVEMTEFERECSVDLECGICLENIMQT---STKRFGILTGCDHVFCLKCIKDWRSSDTKSSENGQVLVRRCPLCREPSYFVIPCDRMVRDPERKKMLIEGY 348
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Match: UPI0014259A03 (probable E3 ubiquitin-protein ligase makorin-1 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259A03) HSP 1 Score: 85.5 bits (210), Expect = 2.230e-13 Identity = 51/180 (28.33%), Postives = 83/180 (46.11%), Query Frame = 1
Query: 967 NNSRPPAKETVCVFFLRGRCKFGDGCRFSHDSRESDGSNGSAERGRKVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAEEAALDEAERIQ-SRRAECGVCLERVQKVRRAEDRVFGILTGCKHVYCLRCINEWR-----DKSKSHECPECRMPSTWVMPSETLVTDPDRKKRLASEFR 1488
N+ +K+ +C F L+G C D C ++H +R RQ A E +++A Q S+ +CG+C+E + + ++R FG+L+ CKH YCL CI +WR +K CP CR+PS +V PS+ V DP+ KK++ +++
Sbjct: 152 NSVAKESKQLLCPFLLQGNCPKNDQCPYTH-----------GDRCEYCRQPCLHPDQPDLNKEHIKECI---------AHHEEEMEKAFAYQRSKDVQCGICMEVILEKSNVKERKFGVLSDCKHPYCLSCIRKWRSAKHYEKKVVRGCPTCRIPSNFVTPSDYWVEDPEEKKKIIDKYK 311
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Match: A0A6U0ULG2_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0ULG2_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.290e-13 Identity = 56/187 (29.95%), Postives = 84/187 (44.92%), Query Frame = 1
Query: 997 VCVFFLRGRCKFGDGCRFSHDSRE--------SDGSNGSAERGRKVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAEEAALDEAERIQSRRAECGVCLERVQKVRR-----------AEDRV---FGILTGCKHVYCLRCINEWRDKSKSH--ECPECRMPSTWVMPSETLVTDPDRKKRLASEF 1485
VC++F +G C++GD CR+ H RE +D + GS E + AL+E +I + A CG+CL+ VQ V + +E R FGI+ C H +CL CI EWR + CP CR S +V+PS + V +P++KKRL +++
Sbjct: 51 VCIYFTQGFCRYGDQCRYRHPPREEELSQSFLADEAEGSLE------------------------------------DDFDALEE--KIATAEAHCGICLDPVQGVPKDDAGEGSDQNDSEYRPWNRFGIMPSCNHTFCLSCIREWRSAGAENATSCPLCREVSHYVIPSNSYVVNPEKKKRLVADY 199
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Match: A0A812TM85_9DINO (PikAII protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TM85_9DINO) HSP 1 Score: 82.8 bits (203), Expect = 3.820e-12 Identity = 79/186 (42.47%), Postives = 100/186 (53.76%), Query Frame = 1
Query: 985 AKETVCVFFLRGRCKFGDGCRFSHDSRESDGSNGSAERGRKVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAEEAALDEAERIQSRRAE---CGVCLERVQKVRRAEDRVFGILTGCKHVYCLRCINEWR------DKSKSHECPECRMPSTWVMPSETLVTDPDRKKRLASEFRKSQEGGNPP 1515
A TVC FL+GRC FGD CR H S S S V + XXXXXXXXXXX XXXXXXX AA AER + R E CG+C E V+K R E FG+L C H +CL CI WR DK CP CR S +V+P+++++ DP+ K+++ +++ QE G P
Sbjct: 817 AGATVCRHFLQGRCAFGDACRNLHTSAPSAPS---------VPRTPGTAXXXXXXXXXXXAPTAXXXXXXXXXRAPAAPGRAERPRPRPEESCDCGICFENVKK--RGER--FGMLESCDHAFCLSCIRGWRREREQQDKQNLRLCPVCRNESFYVIPTDSIILDPEEKRQVIDQYK--QEMGRIP 987
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Match: A0A3Q0CCF3_MESAU (RING-type E3 ubiquitin transferase n=7 Tax=Muroidea TaxID=337687 RepID=A0A3Q0CCF3_MESAU) HSP 1 Score: 81.3 bits (199), Expect = 4.940e-12 Identity = 54/194 (27.84%), Postives = 92/194 (47.42%), Query Frame = 1
Query: 958 KDENNSRPPAKET---VCVFFLRGRCKFGDGCRFSH-DSRESDGSN-----GSAERGRKVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAEEAALDEAERIQ-SRRAECGVCLERVQKVRRAEDRVFGILTGCKHVYCLRCINEWRDKSKSHE-----CPECRMPSTWVMPSETLVTDPDRKKRLASEFRKS 1494
K+E+ P A ET +C + G C++G+ C + H DS + G +A+R + ++ A E ++ + +Q S+ CG+C+E V + +R FGIL+ C H YCL+CI +WR + CPECR+ S +V+PSE V + + K+RL +++++
Sbjct: 199 KEESEKEPAALETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIE--------------------------AHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCSHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEREEKQRLIQKYKEA 366
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Match: Q5NU14-2 (Isoform b of Probable E3 ubiquitin-protein ligase makorin-1 n=2 Tax=Tetraodontidae TaxID=31031 RepID=Q5NU14-2) HSP 1 Score: 79.7 bits (195), Expect = 5.510e-12 Identity = 62/203 (30.54%), Postives = 84/203 (41.38%), Query Frame = 1
Query: 988 KETVCVFFLRGRCKFGDGCRFSHDSRESDGS--------NGSA----ERGRK----------VRQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAEEAALDEAER--------IQ-SRRAECGVCLERVQKVRRAEDRVFGILTGCKHVYCLRCINEWRDKSKSHE-----CPECRMPSTWVMPSETLVTDPDRKKRLASEFR 1488
K C +F+ G CK GD CR+SHD S + NG A E RK R R+ A EA IQ S+ CGVC+E V + +R FGIL+ C H YCL+CI +WR + CPECR+ S +V+PSE V D + K++L +++
Sbjct: 20 KHVTCRYFMHGLCKEGDNCRYSHDLTSSKPAAIPLIEELNGDATTDKEELRKQLCPYAAVGECRYGVNCAYLHGDVCDMCGLQVLHPTDSSQRSEHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCSHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEDKEDKQKLIQKYK 222
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Match: G3TKR0_LOXAF (RING-type E3 ubiquitin transferase n=4 Tax=Loxodonta africana TaxID=9785 RepID=G3TKR0_LOXAF) HSP 1 Score: 80.9 bits (198), Expect = 6.520e-12 Identity = 54/194 (27.84%), Postives = 91/194 (46.91%), Query Frame = 1
Query: 958 KDENNSRPPAKET---VCVFFLRGRCKFGDGCRFSH-DSRESDGSN-----GSAERGRKVRQXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAEEAALDEAERIQ-SRRAECGVCLERVQKVRRAEDRVFGILTGCKHVYCLRCINEWRDKSKSHE-----CPECRMPSTWVMPSETLVTDPDRKKRLASEFRKS 1494
K+E+ P ET +C + G C++G+ C + H DS + G +A+R + +R A E ++ + +Q S+ CG+C+E V + +R FGIL+ C H YCLRCI +WR + CPECR+ S +V+PSE V + + K++L +++++
Sbjct: 197 KEESEEEQPTMETRKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPVDAAQRSQHIRSCIE--------------------------AHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSSCGHTYCLRCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLIQKYKEA 364 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1437.3419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1437.3419.1 >prot_H-canaliculatus_F_contig1437.3419.1 ID=prot_H-canaliculatus_F_contig1437.3419.1|Name=mRNA_H-canaliculatus_F_contig1437.3419.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=514bp MAAAAPGRQSRTPCFFYGKGSCRSGARCRFAHGTSDDHEMLGRASIEETGback to top mRNA from alignment at H-canaliculatus_F_contig1437:14820..22280+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1437.3419.1 ID=mRNA_H-canaliculatus_F_contig1437.3419.1|Name=mRNA_H-canaliculatus_F_contig1437.3419.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7461bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1437:14820..22280+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1437:14820..22280+ >mRNA_H-canaliculatus_F_contig1437.3419.1 ID=mRNA_H-canaliculatus_F_contig1437.3419.1|Name=mRNA_H-canaliculatus_F_contig1437.3419.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3084bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1437:14820..22280+ (Hapterophycus canaliculatus Oshoro5f female)back to top |