mRNA_H-canaliculatus_F_contig14364.3418.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14364.3418.1
Unique NamemRNA_H-canaliculatus_F_contig14364.3418.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: D7FTA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTA9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.160e-15
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    7 RLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
            R   +AAA+PGDSF  EVVVGG+LNFLSIYN+LITGRVLLSWVPQ
Sbjct:   67 RYSCVAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQ 111          
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A7S1VL38_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VL38_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.580e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    4 RRLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
            R   V A AIPGD  A ++VVGG  NFL IYN ++TGR+LLSWVPQ
Sbjct:   67 RASSVTAMAIPGDGIAEQIVVGGFANFLQIYNFILTGRILLSWVPQ 112          
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A1Z5KLA7_FISSO (YggT family protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLA7_FISSO)

HSP 1 Score: 59.3 bits (142), Expect = 1.840e-9
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    4 RRLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
            R   V A AIPG+  A +V VGG  NFLSIYN++IT R+LLSW PQ
Sbjct:   56 RASAVTAMAIPGNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQ 101          
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A7S1GGH8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGH8_CYCTE)

HSP 1 Score: 57.4 bits (137), Expect = 4.760e-9
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   16 VMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
            ++A AIPG+    ++ VGG  NFLSIYNI+IT R+LLSW PQ
Sbjct:   17 ILAMAIPGNGVTEQIFVGGFANFLSIYNIVITARILLSWFPQ 58          
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A1Z5JAT7_FISSO (Diphthine--ammonia ligase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAT7_FISSO)

HSP 1 Score: 59.3 bits (142), Expect = 4.880e-9
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    4 RRLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
            R   V A AIPG+  A +V VGG  NFLSIYN++IT R+LLSW PQ
Sbjct:   56 RASAVTAMAIPGNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQ 101          
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A7S2YCS8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCS8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.300e-9
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   22 AAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
            A AIPG   A +V VGG  NFLSIYN++ITGR+LLSW PQ
Sbjct:   74 AMAIPGYGIAEQVFVGGFANFLSIYNLIITGRILLSWFPQ 113          
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: K0RQ89_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RQ89_THAOC)

HSP 1 Score: 58.9 bits (141), Expect = 6.670e-9
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    1 GRRLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
            GR    +A AIPG+S A +VVVGG  NF+SIYN +IT R+LLSW PQ
Sbjct:   63 GRLRHPLAIAIPGNSVAEQVVVGGFGNFISIYNTVITARILLSWFPQ 109          
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A7S2MRY2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MRY2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.410e-9
Identity = 29/47 (61.70%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 GRRLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
            G   G MA AIPG   A +V VGG  NFLSIYN +IT R+LLSW PQ
Sbjct:   98 GAGHGSMAMAIPGYGVAEQVFVGGFANFLSIYNFIITARILLSWFPQ 144          
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: B7G073_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G073_PHATC)

HSP 1 Score: 57.8 bits (138), Expect = 1.070e-8
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   22 AAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
            A AIPG   A +V VGG LNFLSIYNI+IT R+LLSW PQ
Sbjct:  104 AMAIPGYGVAEQVFVGGFLNFLSIYNIVITARILLSWFPQ 143          
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A7S2XJH8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJH8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.330e-8
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   13 GVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
            G +A AIPGD    ++V+GG  NFL IYN++IT RVLLSW PQ
Sbjct:   91 GRLAMAIPGDGVVEQIVLGGFGNFLQIYNLVITARVLLSWFPQ 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FTA9_ECTSI1.160e-1580.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1VL38_9STRA3.580e-1163.04Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Z5KLA7_FISSO1.840e-960.87YggT family protein n=1 Tax=Fistulifera solaris Ta... [more]
A0A7S1GGH8_CYCTE4.760e-959.52Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5JAT7_FISSO4.880e-960.87Diphthine--ammonia ligase n=1 Tax=Fistulifera sola... [more]
A0A7S2YCS8_9STRA5.300e-967.50Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
K0RQ89_THAOC6.670e-961.70Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2MRY2_9STRA7.410e-961.70Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B7G073_PHATC1.070e-870.00Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2XJH8_9STRA2.330e-860.47Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14364contigH-canaliculatus_F_contig14364:1614..1754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D7FTA9
KEGG koko:K02221
EggNOG free text desc.YGGT family
EggNOG OGs2S4TK@2759,COG0762@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02044
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size123
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.4537814-CDS-H-canaliculatus_F_contig14364:1613..17361622929191.4537814-CDS-H-canaliculatus_F_contig14364:1613..1736Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14364 1614..1736 -
1696845711.304394-CDS-H-canaliculatus_F_contig14364:1613..17361696845711.304394-CDS-H-canaliculatus_F_contig14364:1613..1736Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14364 1614..1736 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.4758112-UTR-H-canaliculatus_F_contig14364:1736..17541622929191.4758112-UTR-H-canaliculatus_F_contig14364:1736..1754Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14364 1737..1754 -
1696845711.3158774-UTR-H-canaliculatus_F_contig14364:1736..17541696845711.3158774-UTR-H-canaliculatus_F_contig14364:1736..1754Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14364 1737..1754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14364.3418.1prot_H-canaliculatus_F_contig14364.3418.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14364 1614..1736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14364.3418.1

>prot_H-canaliculatus_F_contig14364.3418.1 ID=prot_H-canaliculatus_F_contig14364.3418.1|Name=mRNA_H-canaliculatus_F_contig14364.3418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=41bp
MAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ
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mRNA from alignment at H-canaliculatus_F_contig14364:1614..1754-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14364.3418.1 ID=mRNA_H-canaliculatus_F_contig14364.3418.1|Name=mRNA_H-canaliculatus_F_contig14364.3418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=141bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14364:1614..1754- (Hapterophycus canaliculatus Oshoro5f female)
GGGCGGCGCCTGGGAGTGATGGCGGCGGCCATCCCGGGAGACTCCTTCGC GGGCGAGGTGGTCGTGGGCGGCTTGCTCAACTTCCTCAGCATCTACAACA TCCTCATCACGGGCCGCGTGCTGCTCTCCTGGGTGCCTCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14364:1614..1754-

>mRNA_H-canaliculatus_F_contig14364.3418.1 ID=mRNA_H-canaliculatus_F_contig14364.3418.1|Name=mRNA_H-canaliculatus_F_contig14364.3418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=246bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14364:1614..1754- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGCGGCCATCCCGGGAGACTCCTTCGCGGGCGAGGTGGTCGTGGG
CGGCTTGCTCAACTTCCTCAGCATCTACAACATCCTCATCACGGGCCGCG
TGCTGCTCTCCTGGGTGCCTCAGATGGCGGCGGCCATCCCGGGAGACTCC
TTCGCGGGCGAGGTGGTCGTGGGCGGCTTGCTCAACTTCCTCAGCATCTA
CAACATCCTCATCACGGGCCGCGTGCTGCTCTCCTGGGTGCCTCAG
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