mRNA_H-canaliculatus_F_contig14358.3412.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14358.3412.1
Unique NamemRNA_H-canaliculatus_F_contig14358.3412.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Match: A0A8H7WCP9_9HELO (Uncharacterized protein n=1 Tax=Cadophora malorum TaxID=108018 RepID=A0A8H7WCP9_9HELO)

HSP 1 Score: 55.5 bits (132), Expect = 4.440e-7
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 LHSAARGGSERAVRALLRAGSAPDVNQPTLVHNKECPLHIAAKLGHAGASSALVEAGACVNSRDRNGWTPLHLA 222
            LH AA GG    V+ L R G+  D+   +   +++ PLH+AA+ GHAGA +AL++AG   N  D NG TP  LA
Sbjct:  276 LHLAAVGGRTSTVKLLTRYGADLDLKSRS---DEQTPLHLAARYGHAGAVTALLQAGCAQNPVDANGMTPELLA 346          
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Match: A0A8H4ATR6_GIGMA (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4ATR6_GIGMA)

HSP 1 Score: 55.1 bits (131), Expect = 6.400e-7
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    1 LHSAARGGSERAVRALLRAGSAPDVNQPTLVHNKECPLHIAAKLGHAGASSALVEAGACVNSRDRNGWTPLHLASRFGQIE 243
            LH AA GG+E AV  L+   ++  + +  + +NKE  L+ A + GH G    L + GA   +R++NGWTPLH+A+   Q+E
Sbjct:  499 LHWAAFGGNEDAVNCLINLENSSKLIE-AIDNNKETALYEAMRNGHKGVVKLLRKKGANSYARNKNGWTPLHIAAIHCQVE 578          
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Match: A0A5F2IF84_9HYPH (C-type cytochrome n=3 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A5F2IF84_9HYPH)

HSP 1 Score: 52.4 bits (124), Expect = 5.040e-6
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   37 VRALLRAGSAPDVNQPTLVHNKECPLHIAAKLGHAGASSALVEAGACVNSRDRNGWTPLHLASRFGQIE 243
            ++ LL  G+ P+ +      N+E  LH A  LG      ALVEAGA VN++ R+G TPLHLA   GQ E
Sbjct:  105 IKLLLNGGANPNSHS-----NRENALHFAVTLGCLDCVQALVEAGADVNAKTRDGKTPLHLAKSRGQRE 168          
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Match: A0A441I9W3_9HYPH (C-type cytochrome n=4 Tax=Mesorhizobium TaxID=68287 RepID=A0A441I9W3_9HYPH)

HSP 1 Score: 51.6 bits (122), Expect = 9.440e-6
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   37 VRALLRAGSAPDVNQPTLVHNKECPLHIAAKLGHAGASSALVEAGACVNSRDRNGWTPLHLASRFGQIE 243
            +  LL  G+ P+  +     ++E  +HIA  LG      ALVEAGA VN+R ++G TP+HLA R GQ E
Sbjct:  102 INLLLDGGANPNSKR-----SRENAIHIAVNLGCIDCVKALVEAGADVNARTKDGKTPIHLAKRKGQRE 165          
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Match: A0A1G9AQK6_9HYPH (Cytochrome c n=6 Tax=Mesorhizobium TaxID=68287 RepID=A0A1G9AQK6_9HYPH)

HSP 1 Score: 51.2 bits (121), Expect = 1.290e-5
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   37 VRALLRAGSAPDVNQPTLVHNKECPLHIAAKLGHAGASSALVEAGACVNSRDRNGWTPLHLASRFGQIE 243
            +  LL  G+ P+  +     N+E  LHIAA+ G      ALVEAGA VN++ ++G TPLHLA   GQ E
Sbjct:  100 INLLLERGANPNSQR-----NRENALHIAARSGCLDCVKALVEAGADVNAKTKDGKTPLHLAKFKGQRE 163          
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Match: A0A124GRM3_9EURO (Uncharacterized protein n=1 Tax=Penicillium freii TaxID=48697 RepID=A0A124GRM3_9EURO)

HSP 1 Score: 51.2 bits (121), Expect = 1.390e-5
Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   22 GSERAVRALLRAGSAPDVNQPTLVHNKECPLHIAAKLGHAGASSALVEAGACVNSRDRNGWTPLHLASRFGQIE 243
            G E AV+ LL  G+ P+   P    N E PLH+A +  +   +  L++ GAC+ SRD +G TPL  A  FG  E
Sbjct:  342 GCENAVKLLLDHGANPNAMDP----NGEMPLHLAVRDKNCAIAERLIKKGACLESRDCHGRTPLDWALSFGGHE 411          
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Match: A0A8H7WAS1_9HELO (Uncharacterized protein n=1 Tax=Cadophora malorum TaxID=108018 RepID=A0A8H7WAS1_9HELO)

HSP 1 Score: 50.4 bits (119), Expect = 2.780e-5
Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query:    1 LHSAARGGSERAVRALLRAGSAPDVNQPTLVHNKECPLHIAAKLGHAGASSALVEAGACVNSRDRNGWTPLHLASRFGQI 240
            LH AA  G    +  L+     PDVN    +  +   LH+A ++GH      L++AGA VN+RD  G+TP+H+A+   ++
Sbjct: 1591 LHLAAEKGFTGMITFLMENKLVPDVNIANDL--RTTALHVAVRVGHCHTVKQLLQAGADVNARDSEGYTPVHIAASHSRL 1668          
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Match: A0A4R9VX31_9HYPH (C-type cytochrome n=2 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A4R9VX31_9HYPH)

HSP 1 Score: 50.1 bits (118), Expect = 3.350e-5
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   37 VRALLRAGSAPDVNQPTLVHNKECPLHIAAKLGHAGASSALVEAGACVNSRDRNGWTPLHLASRFGQIE 243
            ++ LL  G+ P+ +      N+E  LH A  LG      ALV+AGA VN++ R+G TPLHLA   GQ E
Sbjct:  105 IKLLLDRGANPNSHS-----NRENALHFAVTLGCLDCVQALVDAGADVNAKTRDGKTPLHLAKSRGQRE 168          
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Match: A0A442XKI3_9HYPH (C-type cytochrome n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A442XKI3_9HYPH)

HSP 1 Score: 49.7 bits (117), Expect = 4.570e-5
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   46 LLRAGSAPDVNQPTLVHNKECPLHIAAKLGHAGASSALVEAGACVNSRDRNGWTPLHLASRFGQIE 243
            LL  G+ P+  +     N+E  LHIA + G      ALVEAGA VN++ ++G TPLH+A   GQ E
Sbjct:  104 LLDGGANPNARR-----NREAVLHIAVRSGCLDCVKALVEAGADVNAKTKDGKTPLHMAELKGQRE 164          
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Match: A0A3L6NNK9_FUSOX (Uncharacterized protein n=1 Tax=Fusarium oxysporum f. sp. cepae TaxID=396571 RepID=A0A3L6NNK9_FUSOX)

HSP 1 Score: 49.7 bits (117), Expect = 5.040e-5
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   91 VHNKECPLHIAAKLGHAGASSALVEAGACVNSRDRNGWTPLHLASRFGQ 237
            +H  E  L  AA LGH  A+  L++ GA V++RDRNGWTPLH A   G+
Sbjct:  599 IHTGEACLSHAASLGHIRAAYLLLDRGAEVDTRDRNGWTPLHHAVSQGR 647          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14358.3412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A8H7WCP9_9HELO4.440e-744.59Uncharacterized protein n=1 Tax=Cadophora malorum ... [more]
A0A8H4ATR6_GIGMA6.400e-739.51Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A5F2IF84_9HYPH5.040e-644.93C-type cytochrome n=3 Tax=unclassified Mesorhizobi... [more]
A0A441I9W3_9HYPH9.440e-643.48C-type cytochrome n=4 Tax=Mesorhizobium TaxID=6828... [more]
A0A1G9AQK6_9HYPH1.290e-544.93Cytochrome c n=6 Tax=Mesorhizobium TaxID=68287 Rep... [more]
A0A124GRM3_9EURO1.390e-540.54Uncharacterized protein n=1 Tax=Penicillium freii ... [more]
A0A8H7WAS1_9HELO2.780e-535.00Uncharacterized protein n=1 Tax=Cadophora malorum ... [more]
A0A4R9VX31_9HYPH3.350e-543.48C-type cytochrome n=2 Tax=unclassified Mesorhizobi... [more]
A0A442XKI3_9HYPH4.570e-543.94C-type cytochrome n=1 Tax=Mesorhizobium sp. TaxID=... [more]
A0A3L6NNK9_FUSOX5.040e-551.02Uncharacterized protein n=1 Tax=Fusarium oxysporum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14358contigH-canaliculatus_F_contig14358:1454..1696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929190.5582716-CDS-H-canaliculatus_F_contig14358:1453..16961622929190.5582716-CDS-H-canaliculatus_F_contig14358:1453..1696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14358 1454..1696 -
1696845710.8603458-CDS-H-canaliculatus_F_contig14358:1453..16961696845710.8603458-CDS-H-canaliculatus_F_contig14358:1453..1696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14358 1454..1696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14358.3412.1prot_H-canaliculatus_F_contig14358.3412.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14358 1454..1696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14358.3412.1

>prot_H-canaliculatus_F_contig14358.3412.1 ID=prot_H-canaliculatus_F_contig14358.3412.1|Name=mRNA_H-canaliculatus_F_contig14358.3412.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=81bp
LHSAARGGSERAVRALLRAGSAPDVNQPTLVHNKECPLHIAAKLGHAGAS
SALVEAGACVNSRDRNGWTPLHLASRFGQIE
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mRNA from alignment at H-canaliculatus_F_contig14358:1454..1696-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14358.3412.1 ID=mRNA_H-canaliculatus_F_contig14358.3412.1|Name=mRNA_H-canaliculatus_F_contig14358.3412.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=243bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14358:1454..1696- (Hapterophycus canaliculatus Oshoro5f female)
CTGCACTCGGCGGCCAGGGGGGGCAGCGAACGGGCTGTCAGAGCCCTCCT CCGGGCAGGCTCCGCCCCCGACGTCAATCAGCCCACCCTCGTGCACAACA AGGAATGCCCTCTGCACATCGCCGCCAAGCTTGGGCACGCGGGAGCCTCT TCGGCCCTGGTTGAGGCAGGGGCGTGCGTGAACAGCAGAGACCGGAATGG GTGGACCCCCCTCCACCTGGCCTCTCGGTTTGGGCAGATCGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14358:1454..1696-

>mRNA_H-canaliculatus_F_contig14358.3412.1 ID=mRNA_H-canaliculatus_F_contig14358.3412.1|Name=mRNA_H-canaliculatus_F_contig14358.3412.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14358:1454..1696- (Hapterophycus canaliculatus Oshoro5f female)
CTGCACTCGGCGGCCAGGGGGGGCAGCGAACGGGCTGTCAGAGCCCTCCT
CCGGGCAGGCTCCGCCCCCGACGTCAATCAGCCCACCCTCGTGCACAACA
AGGAATGCCCTCTGCACATCGCCGCCAAGCTTGGGCACGCGGGAGCCTCT
TCGGCCCTGGTTGAGGCAGGGGCGTGCGTGAACAGCAGAGACCGGAATGG
GTGGACCCCCCTCCACCTGGCCTCTCGGTTTGGGCAGATCGAGCTGCACT
CGGCGGCCAGGGGGGGCAGCGAACGGGCTGTCAGAGCCCTCCTCCGGGCA
GGCTCCGCCCCCGACGTCAATCAGCCCACCCTCGTGCACAACAAGGAATG
CCCTCTGCACATCGCCGCCAAGCTTGGGCACGCGGGAGCCTCTTCGGCCC
TGGTTGAGGCAGGGGCGTGCGTGAACAGCAGAGACCGGAATGGGTGGACC
CCCCTCCACCTGGCCTCTCGGTTTGGGCAGATCGAG
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