mRNA_H-canaliculatus_F_contig14355.3410.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14355.3410.1
Unique NamemRNA_H-canaliculatus_F_contig14355.3410.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14355.3410.1 vs. uniprot
Match: A0A6H5JV62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV62_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.480e-19
Identity = 48/59 (81.36%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 VLPLPATREDITRDGRVGRRENAFLDTYFAFFGRFVRLETESEARRTLIELALQDATIT 177
            VLPLPATRE+ITRDGRVGRRENAFLDTYFAFFGRFVR        RTL ELALQDAT T
Sbjct:  560 VLPLPATREEITRDGRVGRRENAFLDTYFAFFGRFVRWVFLF--LRTLTELALQDATTT 616
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BLAST of mRNA_H-canaliculatus_F_contig14355.3410.1 vs. uniprot
Match: D7FM09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM09_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.010e-15
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 VLPLPATREDITRDGRVGRRENAFLDTYFAFFGRFVRL-ETESEAR 135
            VLPLPATRE+ITRDGRVGRRENAFLDTYFAFFGRFVR  + + +AR
Sbjct:  532 VLPLPATREEITRDGRVGRRENAFLDTYFAFFGRFVRAGDPDGQAR 577
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14355.3410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV62_9PHAE4.480e-1981.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM09_ECTSI2.010e-1582.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14355contigH-canaliculatus_F_contig14355:666..1469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000470.1
Exons2
Model size251
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929190.3495164-CDS-H-canaliculatus_F_contig14355:665..7751622929190.3495164-CDS-H-canaliculatus_F_contig14355:665..775Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14355 666..775 +
1696845710.8018327-CDS-H-canaliculatus_F_contig14355:665..7751696845710.8018327-CDS-H-canaliculatus_F_contig14355:665..775Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14355 666..775 +
1622929190.3822157-CDS-H-canaliculatus_F_contig14355:1330..14691622929190.3822157-CDS-H-canaliculatus_F_contig14355:1330..1469Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14355 1331..1469 +
1696845710.8122003-CDS-H-canaliculatus_F_contig14355:1330..14691696845710.8122003-CDS-H-canaliculatus_F_contig14355:1330..1469Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14355 1331..1469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14355.3410.1prot_H-canaliculatus_F_contig14355.3410.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14355 666..1469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14355.3410.1

>prot_H-canaliculatus_F_contig14355.3410.1 ID=prot_H-canaliculatus_F_contig14355.3410.1|Name=mRNA_H-canaliculatus_F_contig14355.3410.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=83bp
VLPLPATREDITRDGRVGRRENAFLDTYFAFFGRFVRLETESEARRTLIE
LALQDATITTTTSAAAGGGDSGGDGDVDDPPHR
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mRNA from alignment at H-canaliculatus_F_contig14355:666..1469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14355.3410.1 ID=mRNA_H-canaliculatus_F_contig14355.3410.1|Name=mRNA_H-canaliculatus_F_contig14355.3410.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=804bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14355:666..1469+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCTCCCGCTACCGGCGACGAGGGAGGATATCACGCGGGACGGCAGGGT
CGGGCGCAGGGAGAACGCCTTCCTGGACACGTACTTCGCGTTCTTCGGGC
GGTTCGTCCGGTGCGTGCGTGTACGGGTGTTCGGGTGGTGGGCCCGTGTT
CTTCGGGCGCGTCCGTTGTTGGTGTTGGTGTTGGTGTTGGTGTTGTTGCT
GGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGG
TGCTGTTGCTGCCGTTGTTGTTGTTGCTGATGTTGTTGTTGTGGCTGTTG
AGTTGTGCGTGCTTTTTGCGCCCGAGGCTTTCTGAGGAGCTTCCTGCCAG
GCGTCATCGGGGGGCAGGATTGATGTCGGGTATCACGCGTCCGTGCATGC
GCGCTGCGGGCTCGGATCAGACCGAGCCTCACGCAGCGATCGTGCCCGAG
CCGCTGGTTGCTGCTGCACAGGCTGCCGCGTGCAGTGAGGATGCCACCTG
CAACGCACACCAACCTTCGAGCCCCCCTCTCACCTGCCCTTCCTGCCCGT
ATCATCGACCTTTTTCGCATGCACGCCTACCAAACTGTCCCCGATCCCCT
CCCCGGAAACTTCCCCCGATCAAAACCCCTGTACCGACACATGGGACCGA
TGCAAAAAAAAAAAGGCTGGAGACGGAGAGCGAAGCCAGGAGGACGCTGA
TCGAGCTTGCCCTCCAAGACGCCACCATCACCACGACCACGTCGGCGGCC
GCCGGTGGCGGTGACAGCGGCGGCGACGGCGACGTAGACGACCCCCCTCA
CCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14355:666..1469+

>mRNA_H-canaliculatus_F_contig14355.3410.1 ID=mRNA_H-canaliculatus_F_contig14355.3410.1|Name=mRNA_H-canaliculatus_F_contig14355.3410.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14355:666..1469+ (Hapterophycus canaliculatus Oshoro5f female)
GTGCTCCCGCTACCGGCGACGAGGGAGGATATCACGCGGGACGGCAGGGT
CGGGCGCAGGGAGAACGCCTTCCTGGACACGTACTTCGCGTTCTTCGGGC
GGTTCGTCCGGTGCTCCCGCTACCGGCGACGAGGGAGGATATCACGCGGG
ACGGCAGGGTCGGGCGCAGGGAGAACGCCTTCCTGGACACGTACTTCGCG
TTCTTCGGGCGGTTCGTCCGGCTGGAGACGGAGAGCGAAGCCAGGAGGAC
GCTGATCGAGCTTGCCCTCCAAGACGCCACCATCACCACGACCACGTCGG
CGGCCGCCGGTGGCGGTGACAGCGGCGGCGACGGCGACGTAGACGACCCC
CCTCACCGGGCTGGAGACGGAGAGCGAAGCCAGGAGGACGCTGATCGAGC
TTGCCCTCCAAGACGCCACCATCACCACGACCACGTCGGCGGCCGCCGGT
GGCGGTGACAGCGGCGGCGACGGCGACGTAGACGACCCCCCTCACCGG
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