mRNA_H-canaliculatus_F_contig14349.3404.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14349.3404.1
Unique NamemRNA_H-canaliculatus_F_contig14349.3404.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14349.3404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14349contigH-canaliculatus_F_contig14349:551..1034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size484
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929183.6481385-UTR-H-canaliculatus_F_contig14349:550..6981622929183.6481385-UTR-H-canaliculatus_F_contig14349:550..698Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14349 551..698 +
1696845710.5388377-UTR-H-canaliculatus_F_contig14349:550..6981696845710.5388377-UTR-H-canaliculatus_F_contig14349:550..698Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14349 551..698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929185.8330982-CDS-H-canaliculatus_F_contig14349:698..10341622929185.8330982-CDS-H-canaliculatus_F_contig14349:698..1034Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14349 699..1034 +
1696845710.5492861-CDS-H-canaliculatus_F_contig14349:698..10341696845710.5492861-CDS-H-canaliculatus_F_contig14349:698..1034Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14349 699..1034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14349.3404.1prot_H-canaliculatus_F_contig14349.3404.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14349 699..1034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14349.3404.1

>prot_H-canaliculatus_F_contig14349.3404.1 ID=prot_H-canaliculatus_F_contig14349.3404.1|Name=mRNA_H-canaliculatus_F_contig14349.3404.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
MLPRWMKNAKLGRGPVGTATGPVPRVSPRHGRPSLLPPVRRSAACVHTRK
LERPQRESRTPHAMEDVCSREGGRRGTAIVRLTLLMMAPRAAPAAEAPPD
STILPFNDCMYS
back to top

mRNA from alignment at H-canaliculatus_F_contig14349:551..1034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14349.3404.1 ID=mRNA_H-canaliculatus_F_contig14349.3404.1|Name=mRNA_H-canaliculatus_F_contig14349.3404.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=484bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14349:551..1034+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGTTGGAGGAGAGGAAGATGTACGAGGAAGGTTGGGAACGGGGGGAGG
GCGGGGGGGGGTCAGGGCGCGCTTCTTGACCAAGACTTGTGGTTGGCGAG
GCGGCTGTTCGACCAATCAGCAGCGAGGCAAAGGACACCGCATAGAACAT
GCTACCGCGCTGGATGAAAAACGCAAAGCTAGGTAGGGGTCCCGTTGGCA
CTGCTACCGGTCCGGTGCCGCGTGTCTCCCCGCGACATGGCAGGCCATCG
CTCCTTCCACCTGTGCGTCGATCAGCGGCGTGCGTGCATACGAGAAAACT
TGAACGACCGCAGCGAGAGAGCAGGACCCCGCATGCCATGGAGGACGTTT
GCAGCCGGGAGGGGGGAAGGAGGGGCACCGCAATTGTTAGACTCACTTTG
CTGATGATGGCTCCAAGAGCCGCTCCTGCCGCGGAAGCTCCCCCCGACAG
CACCATCCTTCCCTTCAACGACTGCATGTACTCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14349:551..1034+

>mRNA_H-canaliculatus_F_contig14349.3404.1 ID=mRNA_H-canaliculatus_F_contig14349.3404.1|Name=mRNA_H-canaliculatus_F_contig14349.3404.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14349:551..1034+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTACCGCGCTGGATGAAAAACGCAAAGCTAGGTAGGGGTCCCGTTGG
CACTGCTACCGGTCCGGTGCCGCGTGTCTCCCCGCGACATGGCAGGCCAT
CGCTCCTTCCACCTGTGCGTCGATCAGCGGCGTGCGTGCATACGAGAAAA
CTTGAACGACCGCAGCGAGAGAGCAGGACCCCGCATGCCATGGAGGACGT
TTGCAGCCGGGAGGGGGGAAGGAGGGGCACCGCAATTGTTAGACTCACTT
TGCTGATGATGGCTCCAAGAGCCGCTCCTGCCGCGGAAGCTCCCCCCGAC
AGCACCATCCTTCCCTTCAACGACTGCATGTACTCCATGCTACCGCGCTG
GATGAAAAACGCAAAGCTAGGTAGGGGTCCCGTTGGCACTGCTACCGGTC
CGGTGCCGCGTGTCTCCCCGCGACATGGCAGGCCATCGCTCCTTCCACCT
GTGCGTCGATCAGCGGCGTGCGTGCATACGAGAAAACTTGAACGACCGCA
GCGAGAGAGCAGGACCCCGCATGCCATGGAGGACGTTTGCAGCCGGGAGG
GGGGAAGGAGGGGCACCGCAATTGTTAGACTCACTTTGCTGATGATGGCT
CCAAGAGCCGCTCCTGCCGCGGAAGCTCCCCCCGACAGCACCATCCTTCC
CTTCAACGACTGCATGTACTCC
back to top