mRNA_H-canaliculatus_F_contig14347.3401.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14347.3401.1
Unique NamemRNA_H-canaliculatus_F_contig14347.3401.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14347.3401.1 vs. uniprot
Match: D7FWP5_ECTSI (Arrestin_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP5_ECTSI)

HSP 1 Score: 555 bits (1429), Expect = 2.640e-196
Identity = 276/363 (76.03%), Postives = 313/363 (86.23%), Query Frame = 1
Query:    1 KNADGSSADELVLRLVGAAETCVMHDKTNTTHNGTSSQTYNGRERVWETKEFLSYEVKLAAFGGKAASGSHSFPFSLMLPPGLPPSMKEDGSQGGSCEISYKFKVRLHRPGMLHFDAKGKASLKVLSRPQHASSPLPVLAGPDTQTVKKCCCLKRGSMSIGFQADHSAVGLNESVGLTVVARNDSSAEVKNMHVEMNQVCTWFARGFKESKTRTIASVVVPGTQLRAAEVGNQRGQSFSAIADTARADLQEQLGSGAGTRYELLVPGDSLLTLQAETIEVKHMLSVVLKTPHCVSSPDVWTPLLVHAGTTGSAEAVPGEGSFVPHSGEAVPFATGLDAHGNVVPVAVPQSAVTMTYTSELPKY 1089
            KN +GSSADELVLRL G A+T VM+D TN  HN +++Q+Y  RE + E KEFLSY+V+LAAFGGKAASGSHSFPF +MLPPGLPPSM+E+GSQGGSCEI Y F+ RLHRPGMLHFDAKGKA L VLS+P  A +  PVL GP TQTVKK CC K GSMSIGFQADHS VGLNE+VGLTVVARNDSSAEVK MHVE+ QV TWFARG+KESKTRT+A+VVVPGTQLRA+E GNQRG+S + IADTARADLQEQLG+GAGT Y+LLVPG+SLLTLQA+ IEVKH LSV+LKTPHC+SSPDVWTPLLVHAGTT + + V GEG FVPHSGEA+PFATGLD  GNV PV+VPQSAVTM YT+ + K+
Sbjct:   31 KNEEGSSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSMEENGSQGGSCEIFYGFEARLHRPGMLHFDAKGKAKLTVLSKPHEAGAATPVLVGPATQTVKKFCCFKSGSMSIGFQADHSEVGLNETVGLTVVARNDSSAEVKTMHVEIKQVSTWFARGYKESKTRTVAAVVVPGTQLRASEKGNQRGRSSAVIADTARADLQEQLGAGAGTHYDLLVPGNSLLTLQADLIEVKHTLSVMLKTPHCISSPDVWTPLLVHAGTTSAPDGVSGEGLFVPHSGEAIPFATGLDDEGNVKPVSVPQSAVTMEYTNNISKF 393          
BLAST of mRNA_H-canaliculatus_F_contig14347.3401.1 vs. uniprot
Match: A0A6H5KH15_9PHAE (Arrestin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH15_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 1.400e-117
Identity = 194/358 (54.19%), Postives = 239/358 (66.76%), Query Frame = 1
Query:   13 GSSADELVLRLVGAAETCVMHDKTNTTHNGTSSQTYNGRERVWETKEFLSYEVKLAAFGGKAASGSHSFPFSLMLPPGLPPSMKEDGSQGGSCEISYKFKVRLHRPGMLHFDAKGKASLKVLSRPQHASSPLPVLAGPDTQTVKKCCCLKRGSMSIGFQADHSAVGLNESVGLTVVARNDSSAEVKNMHVEMNQVCTWFARGFKESKTRTIASVVVPGTQLRAAEVGNQRGQSFSAIADTARADLQEQLGSGAGTRYELLVPGDSLLTLQAETIEVKHMLSVVLKTPHCVSSPDVWTPLLVHAGTTGSAEAVPGEGSFVPHSGEAVPFATGLDAHGNVVPVAVPQSAVTMTYTSELPK 1086
            GS A  LV+RLVG A+T  M   T      + +  Y  R+ + E  EFL Y+V+LA FGGKAASG H++ FS+ LPP LP SMKE G  G SC I+Y F+ RLHRPG+L+FDAKGK  LKVL +P+  S+  PV+AGP  + VKKC CL+ GSMS+GFQAD S VGLNESVG+ VVARNDSS  VKN+ VE+ Q  +W A G  +  TR + SVVVPG +L AAE G QRGQS +AIADTARADL+ QL SGAGTR+EL VP D+ +TL +ETI+V+H+L+V ++ P CV  PDVWT L V  GT+G    V  E S +  S  A P           V V VP SAV + Y  E P+
Sbjct:   34 GSPAGSLVIRLVGLAKTRAMFIATGVVPTTSGAAPYTYRDMLSEDVEFLGYDVQLADFGGKAASGEHTYDFSVTLPPSLPASMKEQGGNG-SCAIAYGFRARLHRPGLLNFDAKGKVQLKVLGKPEETSASSPVVAGPAVKAVKKCYCLQSGSMSLGFQADRSVVGLNESVGVIVVARNDSSVAVKNLRVELVQETSWTANGAGDVSTRVVKSVVVPGAELGAAEFGGQRGQSAAAIADTARADLERQLASGAGTRHELTVPADTSITLNSETIQVRHVLTVRIQGPRCVECPDVWTSLHVQPGTSGVVPKVHEETSSLAPSSTARP-----------VTVTVPPSAVKLAYNHEQPR 379          
BLAST of mRNA_H-canaliculatus_F_contig14347.3401.1 vs. uniprot
Match: D7FWP6_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP6_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 2.100e-96
Identity = 180/387 (46.51%), Postives = 221/387 (57.11%), Query Frame = 1
Query:   13 GSSADELVLRLVGAAETCVMHDKTNTTHNGTSSQTYNGRERVWETKEFLSYEVKLAAFGGKAASGSHSFPFSLMLPPGLPPSMKEDGSQGGSCEISYKFKVRLHRPGMLHFDAKGKASLKVLSRPQHASSPLPVLAGPDTQTVKKCCCLKRGS-----------------------------MSIGFQADHSAVGLNESVGLTVVARNDSSAEVKNMHVEMNQVCTWFARGFKESKTRTIASVVVPGTQLRAAEVGNQRGQSFSAIADTARADLQEQLGSGAGTRYELLVPGDSLLTLQAETIEVKHMLSVVLKTPHCVSSPDVWTPLLVHAGTTGSAEAVPGEGSFVPHSGEAVPFATGLDAHGNVVPVAVPQSAVTMTYTSELPK 1086
            GS A  LV+RLVG A+T  M   T      + +  Y  R+ + E  EFL Y+V+LA FGG+AASG H++ FS+ LPP LP SMKE G  GGSC I+Y F+ RLHRPG+L+FDAKGK  LKVL +PQ  S+  PV+AGP+   VKKC CL+ GS                             MS+GFQAD S VGLNESVG+TVVARNDSS  VKN+ +E+ Q  +W A G  +  TR + SVVVPG +L A E G QRG+S +AIADTARADL+ QL SGAGTRYEL VP D+ +TL +ETI+                            GT+G    V  E S +  S  A P           V V VP SAV + Y  E P+
Sbjct:   34 GSPAGSLVIRLVGLAKTRAMFTATGVVPTESGAAPYTYRDTLSEDVEFLGYDVQLADFGGRAASGEHTYDFSVTLPPSLPASMKEQGG-GGSCAIAYGFRARLHRPGLLNFDAKGKVQLKVLGKPQETSASSPVVAGPEVMAVKKCYCLQSGSCVAESRSTMDLGHRHARWQHGAPTNSHESMSLGFQADRSVVGLNESVGITVVARNDSSVAVKNLRIELVQETSWTANGAGDVSTRAVKSVVVPGAELGAVEFGGQRGRSAAAIADTARADLESQLASGAGTRYELTVPADTSITLNSETIQ---------------------------PGTSGVVPKVHEETSSLAPSSTARP-----------VTVTVPPSAVKLAYNHEQPR 381          
BLAST of mRNA_H-canaliculatus_F_contig14347.3401.1 vs. uniprot
Match: A0A7S4EWN0_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EWN0_CHRCT)

HSP 1 Score: 127 bits (318), Expect = 1.210e-28
Identity = 103/351 (29.34%), Postives = 158/351 (45.01%), Query Frame = 1
Query:   22 ADELVLRLVGAAETCVMHDKTNTTHNGTSSQTYNGRERVWETKEFLSYEVKLAAFG---GKAASGSHSFPFSLMLPPGLPPSMKEDGSQGGSCEISYKFKVRLHRPGMLHFDAKGKASLKVLSRPQHASSPLPVLAGPDTQTVKKCCCLKRGSMSIGFQADHSAVGLNESVGLTVVARNDSSAEVKNMHVEMNQVCTWFARGFKESKTRTIASVVVPGTQLRAAEVGNQRGQSFSAIADTARA-------DLQEQLGSGAGTRYELLVPGDSLLTLQAETIEVKHMLSVVLKTPHCVSSPDVWTPLLVHAGTTGSAEAVPGEGSFVPHSGEAVPFATGLDAHGNVVPVAVP 1044
            AD L + + G  E   +H  T TTH+                 +   + V +   G   G+   G + FPFS +LP GLP +M   G  GG C+I Y    +L RPGM++FD K      V S P    + +P    P    V  C CL +G+M++G   D + +G  ESV + +  +NDS+A V  +   + +   W A G   +  R IA V    + +   +  +Q   +  A+ + A A       +L +QL  G   R  L +  D+  +     + V+H L V L+T  CV++P V T  +V  G      AV       P  G+A+P AT +  +   +P+AVP
Sbjct:   53 ADALQVEI-GGNEKSHVHWVTTTTHSDGRXXXXXXXXXXXAYAKRALFRVVVPIHGFKEGRLLPGRYEFPFSALLPRGLPTTMYAHGG-GGDCQIKYYINAKLTRPGMMNFDLKTTRPFMVSSTPMPPEA-VPAFLQPSETKVSTCWCLGKGAMTLGATLDDTLIGRGESVRVGLALKNDSTATVDKISACVTEFVNWHAGGHSNNHKRKIAQVEFDLSSIHGVDKLDQA--ALKAVREAAAAGLSQTYEELYQQLAHGK-QRSLLSISADARDSYAGAVLSVRHQLEVRLETACCVTNPSVQT--IVRIGAPAPPPAV-----ATPVLGQALPVATPVQTY---LPIAVP 387          
BLAST of mRNA_H-canaliculatus_F_contig14347.3401.1 vs. uniprot
Match: A0A7S1FHZ2_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FHZ2_NOCSC)

HSP 1 Score: 121 bits (303), Expect = 1.350e-26
Identity = 81/255 (31.76%), Postives = 125/255 (49.02%), Query Frame = 1
Query:  166 EVKLAAFG-GKAASGSHSFPFSLMLPPGLPPSMKEDGSQGGSCEISYKFKVRLHRPGMLHFDAKGKASLKVLSRPQHASSPLPVLAGPDTQTVKKCCCLKRGSMSIGFQADHSAVGLNESVGLTVVARNDSSAEVKNMHVEMNQVCTWFARGFKESKTRTIASV-VVPGTQLRAAEVGNQR---GQSFSAIADTARADLQEQLGSGAGTRYELLVPGDSLLTLQAETIEVKHMLSVVLKTPHCVSSPDVWTPLLV 915
            +V LA+F  G    G + +PFS +LPPGLP S+      GG C I Y    RLHRPGM  +D   K    V ++    S   P+ A P+T  V  CCCL RGSM++G   D + +G  +++G+ +  +N+S+A V  + V++++V  W A G      R +A   +   T    AEV  +    G+  +A       +L   L +G   R  L V   +  T     + V H + + L T  CV++P +  P+ +
Sbjct:  115 DVPLASFSSGAVEPGRYEYPFSTVLPPGLP-SVMCASQGGGDCRIHYSLTARLHRPGMFKWDVTSKVPFAVQAQALPPSKQ-PLYAQPETALVNLCCCLGRGSMTLGAVVDETFLGRGQTLGVGIAVKNESAARVHGLFVKISEVVRWTAGGHGHRLERVLAQADLAIETMEGLAEVSKEARKGGRQDAASRYRTYEELYATL-TGGRQRVSLRVSPAARDTYVGSVLSVSHRIQLELVTSFCVTNPILQVPVRI 366          
BLAST of mRNA_H-canaliculatus_F_contig14347.3401.1 vs. uniprot
Match: A0A0G4G636_VITBC (Arrestin_C domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G636_VITBC)

HSP 1 Score: 69.3 bits (168), Expect = 2.760e-9
Identity = 51/187 (27.27%), Postives = 76/187 (40.64%), Query Frame = 1
Query:   37 LRLVGAAETCVMHDKTNTTHNGTSSQTYNGRERVWETKEFLSYEVKLAAFGGKAASGSHSFPFSLMLPPGLPPSMKEDGSQGG---SCEISYKFKVRLHRPGMLHFDAKGKASLKVLSRPQHASSPLPVLAGPDTQTVKKCCCLKRGSMSIGFQADHSAVGLNESVGLTVVARNDSSAEVKNMHVEM 588
            L++ G     V    T T   G +++            +F   EV +A        G +S+PF  MLP  LP S +      G   +CEI YK K ++ RPGM   D K    L V  R      P   L G D Q +  CCC+ +G M++  + +       +   L     N S A +  + +E+
Sbjct:   41 LKVSGFERVTVWETYTVTEGTGDNAKQVQKTRTHTNRNDFFKVEVPVAQGLSHLDRGQYSYPFRFMLPSTLPGSFELSDRVHGDRYNCEIVYKVKGKVVRPGMFKADLKDTKKLTVYQR----MPPSVELVGHDHQMMYLCCCIAKGEMNLTMRCNADKYMPGDMAQLLCSIDNQSEANIPKIRLEL 223          
BLAST of mRNA_H-canaliculatus_F_contig14347.3401.1 vs. uniprot
Match: A0A7S3RIZ2_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RIZ2_9SPIT)

HSP 1 Score: 68.2 bits (165), Expect = 5.680e-9
Identity = 37/164 (22.56%), Postives = 78/164 (47.56%), Query Frame = 1
Query:  439 VKKCCCLKRGSMSIGFQADHSAVGLNESVGLTVVARNDSSAEVKNMHVEMNQVCTWFARGFKESKTRTIASVVVPGTQLRAAEVGNQRGQSFSAIADTARADLQ-----EQLGSGAGTRYELLVPGDSLLTLQAETIEVKHMLSVVLKTPHCVSSPDVWTPLLV 915
            V  CCC+ +G +++    D + +G  E++ + V   N+SS+  + M+ ++ +  +W A G    ++RTIA        +    +G +      AI +   + ++      +       R  L     +  T Q   + V+H+++V +KTP+CV+ P++  P+ +
Sbjct:    2 VNMCCCIPQGQLTLAASIDDTCMGRGEALDIAVAVNNESSSIPERMYADVREYVSWHAGGHSNHQSRTIAYAEYNPADVEG--LGRKSKHELRAIKENPGSRMEMLALMHRSLQNREARQPLRCNPTARDTYQGRVLSVRHVMAVRVKTPYCVTDPELALPIRI 163          
BLAST of mRNA_H-canaliculatus_F_contig14347.3401.1 vs. uniprot
Match: A0A6P8HT67_ACTTE (arrestin domain-containing protein A-like isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HT67_ACTTE)

HSP 1 Score: 63.5 bits (153), Expect = 1.680e-7
Identity = 52/192 (27.08%), Postives = 83/192 (43.23%), Query Frame = 1
Query:  166 EVKLAAFGGKAASGSHSFPFSLMLPPGLPPSMKEDGSQGG-----SCEISYKFKVRLHRPGMLHFDAKGKASLKVLSRPQHASSPLPVLAGP---DTQTVKKCCCLKRGSMSIGFQADHSAVGLNESVGLTVVARNDSSAEVKNMHVEMNQVCTWFAR------GFKESKTRT--IASVVVPGTQLRAAEVG 693
            E +L  + G    G +++PF   L   LP + K++G Q       S EI Y     +   G       GK   +V     + + PL  + G    D +TVK CCC+ RG +S+  + D  A    E   L +  +N+S  ++  M+V++ +V T   R      G +E  T T  + S  +P   L   + G
Sbjct:   79 EFRLIEYEGGIPMGFYAYPFHFSLQQELPATFKDNGVQADNTSKWSAEIQYSVTAEVEMSG------SGKVLQEVQPIIINKNLPLSDIQGDPVSDKKTVKICCCIPRGDVSLIARLDKKAYTSGEDAKLILETKNNSGVDIDAMNVKVMRVVTLSPRDKCDSSGSQEENTSTTLVKSPFIPNIMLTVTQEG 264          
BLAST of mRNA_H-canaliculatus_F_contig14347.3401.1 vs. uniprot
Match: R1EL60_EMIHU (Arrestin_N domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EL60_EMIHU)

HSP 1 Score: 57.4 bits (137), Expect = 2.040e-6
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   31 LVLRLVGAAETCVMHDKTNTTH-NGTSSQTYNGRERVWETKEFLSYEVKLAAF-GGKAASGSHSFPFSLMLPPGLPPSMKEDGSQGGSCEISYKFK 312
            L L + GA E   +H  T  TH +G + +T       +  +  L   V LA+F  G    GS+ FPFSL+LP GLP SM   G  GGSC+ISY  K
Sbjct:   40 LQLEVFGA-EFSHVHWTTQETHGSGENRKTVTKHHHAYARRHLLRVVVTLASFPNGSLPPGSYEFPFSLVLPSGLPSSMYAAGG-GGSCKISYSVK 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14347.3401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FWP5_ECTSI2.640e-19676.03Arrestin_N domain-containing protein n=2 Tax=Ectoc... [more]
A0A6H5KH15_9PHAE1.400e-11754.19Arrestin_C domain-containing protein n=1 Tax=Ectoc... [more]
D7FWP6_ECTSI2.100e-9646.51Arrestin_N domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S4EWN0_CHRCT1.210e-2829.34Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S1FHZ2_NOCSC1.350e-2631.76Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A0G4G636_VITBC2.760e-927.27Arrestin_C domain-containing protein n=2 Tax=Vitre... [more]
A0A7S3RIZ2_9SPIT5.680e-922.56Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A6P8HT67_ACTTE1.680e-727.08arrestin domain-containing protein A-like isoform ... [more]
R1EL60_EMIHU2.040e-641.67Arrestin_N domain-containing protein n=1 Tax=Emili... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14347contigH-canaliculatus_F_contig14347:737..2632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1e-15
Seed eggNOG ortholog35128.Thaps10064
EggNOG OGs2E7WV@1,2SEF1@2759,2XDV5@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionImmunoglobulin E-set
Ec32 orthologEc-06_001430.1
Exons3
Model size1092
Cds size1092
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14347.3401.1prot_H-canaliculatus_F_contig14347.3401.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14347 737..2632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929183.2760262-CDS-H-canaliculatus_F_contig14347:736..13581622929183.2760262-CDS-H-canaliculatus_F_contig14347:736..1358Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14347 737..1358 -
1696845710.498271-CDS-H-canaliculatus_F_contig14347:736..13581696845710.498271-CDS-H-canaliculatus_F_contig14347:736..1358Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14347 737..1358 -
1622929183.2906506-CDS-H-canaliculatus_F_contig14347:1768..19741622929183.2906506-CDS-H-canaliculatus_F_contig14347:1768..1974Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14347 1769..1974 -
1696845710.5078554-CDS-H-canaliculatus_F_contig14347:1768..19741696845710.5078554-CDS-H-canaliculatus_F_contig14347:1768..1974Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14347 1769..1974 -
1622929183.3048458-CDS-H-canaliculatus_F_contig14347:2368..26321622929183.3048458-CDS-H-canaliculatus_F_contig14347:2368..2632Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14347 2369..2632 -
1696845710.520901-CDS-H-canaliculatus_F_contig14347:2368..26321696845710.520901-CDS-H-canaliculatus_F_contig14347:2368..2632Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14347 2369..2632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14347.3401.1

>prot_H-canaliculatus_F_contig14347.3401.1 ID=prot_H-canaliculatus_F_contig14347.3401.1|Name=mRNA_H-canaliculatus_F_contig14347.3401.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=364bp
KNADGSSADELVLRLVGAAETCVMHDKTNTTHNGTSSQTYNGRERVWETK
EFLSYEVKLAAFGGKAASGSHSFPFSLMLPPGLPPSMKEDGSQGGSCEIS
YKFKVRLHRPGMLHFDAKGKASLKVLSRPQHASSPLPVLAGPDTQTVKKC
CCLKRGSMSIGFQADHSAVGLNESVGLTVVARNDSSAEVKNMHVEMNQVC
TWFARGFKESKTRTIASVVVPGTQLRAAEVGNQRGQSFSAIADTARADLQ
EQLGSGAGTRYELLVPGDSLLTLQAETIEVKHMLSVVLKTPHCVSSPDVW
TPLLVHAGTTGSAEAVPGEGSFVPHSGEAVPFATGLDAHGNVVPVAVPQS
AVTMTYTSELPKY*
back to top

mRNA from alignment at H-canaliculatus_F_contig14347:737..2632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14347.3401.1 ID=mRNA_H-canaliculatus_F_contig14347.3401.1|Name=mRNA_H-canaliculatus_F_contig14347.3401.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1896bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14347:737..2632- (Hapterophycus canaliculatus Oshoro5f female)
AAAAACGCAGATGGGTCGTCCGCAGATGAGCTCGTCCTTCGACTGGTCGG GGCGGCGGAGACTTGCGTCATGCACGACAAGACAAACACCACCCACAACG GCACCAGCTCCCAAACGTACAATGGTCGCGAGAGGGTGTGGGAGACGAAG GAATTTCTCTCGTACGAGGTCAAGCTGGCGGCTTTCGGCGGAAAGGCGGC TTCAGGGAGTCACAGCTTTCCGTTCTCGCTGATGCTCCCTCCCGGACTGC CGCCGTCCATGAAGGTATGATATTTGCCGCAGTTGTTTCTCATCTCGCGT GCTCGGGGTTGGAAGAGTGGTTGGAGGCGGTAGAGGCAGAGGCTCAGAAT GTCACCAAACGGACCACCTGATGAGCGTCAGAGAACCTTGAGGCAATTCA AACACACCCAATTAACTGCTCTTGGCCTGTGGGGTGCCGCTTCTAAGTCT ATCTGTGTAGAGTGCGGTGTGTTTCCGTTGGGTACGATGTCGTCTGTGGT TGACGGTTCGAACTCGCGTACCAGGTGGTAGATCTTCAGCATAAGCCTCG TCCGAACGGGAGTGTGAAGAAGTTTCCGATGTCAACGCGGTCGCCACCCG ACCCTTGCGGGCGGGGGCATCTATCTCAACCCGTGCGGCCTTCGGACACC TGCCGCAGGAGGATGGCTCGCAGGGGGGAAGCTGCGAGATTTCGTACAAG TTCAAGGTACGGCTGCACCGCCCGGGGATGCTTCACTTTGACGCGAAGGG AAAAGCCAGTCTGAAGGTGTTGAGCAGACCGCAGCACGCTAGCTCTCCGC TGCCGGTACTTGCGGGACCAGACACGCAGACCGTGAAGAAATGCTGCTGC CTCAAGAGAGGGAGGTGAGCGGTCGTGGCGCCGGCGCGATTCGATGTCGT GCGTGGATTGAGCTTTTGTTGTGTCGCTTTATCCGCCGTGAGCTGGGCGC GTTTATCTGAAGTGAGCCGCTTTAGCTGGAAGAACTATGCTGTCCACGGA TAGGTGGACAACGACGCAAGGGCAGCTACGATGGTTCGGGAAGGGTTTAA CATCCAGACGGGTAGACTGCACCTGTGGCTCTTGTGTTCGATAGGAGTGG CTGTATTGACGTTGGCTATCGTATCGACGTTGGCTATCGTCGTCAGCCAT GCGAGTAGCGGATGTGGCAGTTTTTGCGTCCCAGGATCGTGTGCGAAAAG GCCGCTCTCCGGATCTGACGGGGTCCGGTTTTCTCCCGCCCATGCCCTCC GCGTATCTCGGCGTGCCGTACCAGCATGAGCATCGGCTTTCAGGCGGACC ACTCGGCGGTGGGGCTCAACGAGTCGGTAGGTCTCACCGTCGTAGCACGG AACGACAGCTCCGCCGAAGTGAAAAACATGCACGTGGAGATGAATCAAGT GTGCACGTGGTTCGCCCGAGGCTTCAAAGAAAGCAAGACACGCACCATCG CGTCGGTTGTTGTTCCCGGGACGCAACTCCGAGCGGCTGAGGTGGGGAAC CAGCGCGGCCAAAGCTTCTCCGCCATCGCAGACACGGCTCGGGCTGATCT CCAGGAGCAGCTCGGCTCTGGGGCTGGCACTCGCTACGAGCTCCTTGTCC CCGGGGACAGCTTGCTGACTCTCCAGGCGGAGACTATCGAGGTCAAGCAC ATGCTCAGCGTGGTGCTGAAGACCCCGCACTGCGTCAGCTCCCCCGACGT CTGGACACCGCTACTCGTGCATGCCGGAACCACCGGCAGCGCGGAGGCTG TGCCTGGTGAGGGGTCCTTCGTTCCACACTCAGGCGAGGCCGTACCGTTC GCCACTGGTTTGGACGCCCACGGAAATGTTGTGCCCGTCGCGGTTCCCCA GAGTGCCGTGACTATGACCTACACTAGTGAACTGCCCAAATATTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14347:737..2632-

>mRNA_H-canaliculatus_F_contig14347.3401.1 ID=mRNA_H-canaliculatus_F_contig14347.3401.1|Name=mRNA_H-canaliculatus_F_contig14347.3401.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2184bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14347:737..2632- (Hapterophycus canaliculatus Oshoro5f female)
AAAAACGCAGATGGGTCGTCCGCAGATGAGCTCGTCCTTCGACTGGTCGG
GGCGGCGGAGACTTGCGTCATGCACGACAAGACAAACACCACCCACAACG
GCACCAGCTCCCAAACGTACAATGGTCGCGAGAGGGTGTGGGAGACGAAG
GAATTTCTCTCGTACGAGGTCAAGCTGGCGGCTTTCGGCGGAAAGGCGGC
TTCAGGGAGTCACAGCTTTCCGTTCTCGCTGATGCTCCCTCCCGGACTGC
CGCCGTCCATGAAGAAAAACGCAGATGGGTCGTCCGCAGATGAGCTCGTC
CTTCGACTGGTCGGGGCGGCGGAGACTTGCGTCATGCACGACAAGACAAA
CACCACCCACAACGGCACCAGCTCCCAAACGTACAATGGTCGCGAGAGGG
TGTGGGAGACGAAGGAATTTCTCTCGTACGAGGTCAAGCTGGCGGCTTTC
GGCGGAAAGGCGGCTTCAGGGAGTCACAGCTTTCCGTTCTCGCTGATGCT
CCCTCCCGGACTGCCGCCGTCCATGAAGGAGGATGGCTCGCAGGGGGGAA
GCTGCGAGATTTCGTACAAGTTCAAGGTACGGCTGCACCGCCCGGGGATG
CTTCACTTTGACGCGAAGGGAAAAGCCAGTCTGAAGGTGTTGAGCAGACC
GCAGCACGCTAGCTCTCCGCTGCCGGTACTTGCGGGACCAGACACGCAGA
CCGTGAAGAAATGCTGCTGCCTCAAGAGAGGGAGGAGGATGGCTCGCAGG
GGGGAAGCTGCGAGATTTCGTACAAGTTCAAGGTACGGCTGCACCGCCCG
GGGATGCTTCACTTTGACGCGAAGGGAAAAGCCAGTCTGAAGGTGTTGAG
CAGACCGCAGCACGCTAGCTCTCCGCTGCCGGTACTTGCGGGACCAGACA
CGCAGACCGTGAAGAAATGCTGCTGCCTCAAGAGAGGGAGCATGAGCATC
GGCTTTCAGGCGGACCACTCGGCGGTGGGGCTCAACGAGTCGGTAGGTCT
CACCGTCGTAGCACGGAACGACAGCTCCGCCGAAGTGAAAAACATGCACG
TGGAGATGAATCAAGTGTGCACGTGGTTCGCCCGAGGCTTCAAAGAAAGC
AAGACACGCACCATCGCGTCGGTTGTTGTTCCCGGGACGCAACTCCGAGC
GGCTGAGGTGGGGAACCAGCGCGGCCAAAGCTTCTCCGCCATCGCAGACA
CGGCTCGGGCTGATCTCCAGGAGCAGCTCGGCTCTGGGGCTGGCACTCGC
TACGAGCTCCTTGTCCCCGGGGACAGCTTGCTGACTCTCCAGGCGGAGAC
TATCGAGGTCAAGCACATGCTCAGCGTGGTGCTGAAGACCCCGCACTGCG
TCAGCTCCCCCGACGTCTGGACACCGCTACTCGTGCATGCCGGAACCACC
GGCAGCGCGGAGGCTGTGCCTGGTGAGGGGTCCTTCGTTCCACACTCAGG
CGAGGCCGTACCGTTCGCCACTGGTTTGGACGCCCACGGAAATGTTGTGC
CCGTCGCGGTTCCCCAGAGTGCCGTGACTATGACCTACACTAGTGAACTG
CCCAAATATTAGCATGAGCATCGGCTTTCAGGCGGACCACTCGGCGGTGG
GGCTCAACGAGTCGGTAGGTCTCACCGTCGTAGCACGGAACGACAGCTCC
GCCGAAGTGAAAAACATGCACGTGGAGATGAATCAAGTGTGCACGTGGTT
CGCCCGAGGCTTCAAAGAAAGCAAGACACGCACCATCGCGTCGGTTGTTG
TTCCCGGGACGCAACTCCGAGCGGCTGAGGTGGGGAACCAGCGCGGCCAA
AGCTTCTCCGCCATCGCAGACACGGCTCGGGCTGATCTCCAGGAGCAGCT
CGGCTCTGGGGCTGGCACTCGCTACGAGCTCCTTGTCCCCGGGGACAGCT
TGCTGACTCTCCAGGCGGAGACTATCGAGGTCAAGCACATGCTCAGCGTG
GTGCTGAAGACCCCGCACTGCGTCAGCTCCCCCGACGTCTGGACACCGCT
ACTCGTGCATGCCGGAACCACCGGCAGCGCGGAGGCTGTGCCTGGTGAGG
GGTCCTTCGTTCCACACTCAGGCGAGGCCGTACCGTTCGCCACTGGTTTG
GACGCCCACGGAAATGTTGTGCCCGTCGCGGTTCCCCAGAGTGCCGTGAC
TATGACCTACACTAGTGAACTGCCCAAATATTAG
back to top