mRNA_H-canaliculatus_F_contig14337.3393.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14337.3393.1
Unique NamemRNA_H-canaliculatus_F_contig14337.3393.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Match: A0A6H5KBJ7_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.130e-25
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 126
            RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHP 
Sbjct:   40 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPA 81
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BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Match: D7G3D3_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D3_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 8.000e-24
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 126
            RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV
Sbjct:   89 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 130
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BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Match: A0A7S2LKQ2_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LKQ2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.520e-19
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 126
            R CGYVFKRGD+AWNCR CQ DSTCV CDACF+ SDHTGH V
Sbjct:   35 RPCGYVFKRGDMAWNCRTCQTDSTCVLCDACFQASDHTGHEV 76
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BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Match: A0A7S3XNE3_HETAK (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNE3_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 4.430e-19
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 126
            RVCGYVF+RGDIAWNCR CQ D TCVQCDAC+R +DH GH V
Sbjct:   93 RVCGYVFQRGDIAWNCRDCQKDPTCVQCDACYRAADHRGHAV 134
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BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Match: A0A7S4EF35_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EF35_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.550e-19
Identity = 34/42 (80.95%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 126
            R CGYVFKRGDIAWNCR CQ DSTCV CD CFR SDH GH V
Sbjct:   27 RPCGYVFKRGDIAWNCRTCQTDSTCVICDTCFRSSDHEGHEV 68
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BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Match: A0A7R9VRA8_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRA8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.290e-18
Identity = 34/42 (80.95%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 126
            R CGYVF+RGDIAWNCR CQ DSTCV CDACFR SDH GH V
Sbjct:  157 RPCGYVFRRGDIAWNCRTCQTDSTCVLCDACFRDSDHEGHEV 198
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BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Match: A0A7S4V6U6_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V6U6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.960e-18
Identity = 32/42 (76.19%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 126
            R CGYVF+RGDIAWNCR CQ DSTCV CD CF  SDH GH V
Sbjct:   44 RPCGYVFRRGDIAWNCRTCQTDSTCVLCDRCFHESDHEGHEV 85
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BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Match: A0A7S3P848_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P848_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.270e-18
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 126
            R CGYVF+RGDIAWNCR CQ D TCV CD CFRRSDH GH V
Sbjct:   51 RPCGYVFQRGDIAWNCRTCQTDPTCVICDDCFRRSDHQGHEV 92
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BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Match: K8YNA8_NANGC (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YNA8_NANGC)

HSP 1 Score: 80.9 bits (198), Expect = 8.790e-18
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    4 VCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 126
            VCGY FKRGD+ WNCR CQ D TCVQCD CFR SDH GH V
Sbjct:   72 VCGYTFKRGDLCWNCRSCQTDPTCVQCDPCFRASDHAGHEV 112
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BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Match: A0A1Z5JKC4_FISSO (E3 ubiquitin-protein ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKC4_FISSO)

HSP 1 Score: 82.0 bits (201), Expect = 4.640e-17
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPV 126
            R CGYVFKRGDIAWNCR CQ D+TCV CD CFR SDH GH V
Sbjct:  185 RPCGYVFKRGDIAWNCRTCQTDATCVICDTCFRHSDHQGHEV 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14337.3393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBJ7_9PHAE6.130e-2597.62E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
D7G3D3_ECTSI8.000e-24100.00E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A7S2LKQ2_9STRA1.520e-1980.95E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Lep... [more]
A0A7S3XNE3_HETAK4.430e-1978.57E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Het... [more]
A0A7S4EF35_9STRA9.550e-1980.95E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pse... [more]
A0A7R9VRA8_9STRA1.290e-1880.95E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pse... [more]
A0A7S4V6U6_9STRA4.960e-1876.19E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dit... [more]
A0A7S3P848_9STRA5.270e-1878.57E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amp... [more]
K8YNA8_NANGC8.790e-1875.61E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Nan... [more]
A0A1Z5JKC4_FISSO4.640e-1778.57E3 ubiquitin-protein ligase n=2 Tax=Fistulifera so... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14337contigH-canaliculatus_F_contig14337:2394..2531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue2.1e-19
Seed eggNOG ortholog2880.D7G3D3
KEGG koko:K10626
EggNOG free text desc.ubiquitin-dependent protein catabolic process via the N-end rule pathway
EggNOG OGsKOG1140@1,KOG1140@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929181.9573746-CDS-H-canaliculatus_F_contig14337:2393..25311622929181.9573746-CDS-H-canaliculatus_F_contig14337:2393..2531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14337 2394..2531 -
1696845710.0142539-CDS-H-canaliculatus_F_contig14337:2393..25311696845710.0142539-CDS-H-canaliculatus_F_contig14337:2393..2531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14337 2394..2531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14337.3393.1prot_H-canaliculatus_F_contig14337.3393.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14337 2394..2531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14337.3393.1

>prot_H-canaliculatus_F_contig14337.3393.1 ID=prot_H-canaliculatus_F_contig14337.3393.1|Name=mRNA_H-canaliculatus_F_contig14337.3393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=46bp
RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVRKE*
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mRNA from alignment at H-canaliculatus_F_contig14337:2394..2531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14337.3393.1 ID=mRNA_H-canaliculatus_F_contig14337.3393.1|Name=mRNA_H-canaliculatus_F_contig14337.3393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=138bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14337:2394..2531- (Hapterophycus canaliculatus Oshoro5f female)
AGGGTCTGCGGGTACGTTTTCAAACGCGGCGACATCGCGTGGAATTGCCG
CAAGTGCCAGGTGGACAGCACGTGCGTGCAGTGCGACGCCTGCTTCCGGC
GATCGGATCACACGGGGCACCCGGTGAGGAAAGAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14337:2394..2531-

>mRNA_H-canaliculatus_F_contig14337.3393.1 ID=mRNA_H-canaliculatus_F_contig14337.3393.1|Name=mRNA_H-canaliculatus_F_contig14337.3393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14337:2394..2531- (Hapterophycus canaliculatus Oshoro5f female)
AGGGTCTGCGGGTACGTTTTCAAACGCGGCGACATCGCGTGGAATTGCCG
CAAGTGCCAGGTGGACAGCACGTGCGTGCAGTGCGACGCCTGCTTCCGGC
GATCGGATCACACGGGGCACCCGGTGAGGAAAGAGTAGAGGGTCTGCGGG
TACGTTTTCAAACGCGGCGACATCGCGTGGAATTGCCGCAAGTGCCAGGT
GGACAGCACGTGCGTGCAGTGCGACGCCTGCTTCCGGCGATCGGATCACA
CGGGGCACCCGGTGAGGAAAGAGTAG
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