mRNA_H-canaliculatus_F_contig14318.3381.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14318.3381.1
Unique NamemRNA_H-canaliculatus_F_contig14318.3381.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14318.3381.1 vs. uniprot
Match: A0A6H5JG49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG49_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 1.470e-101
Identity = 262/513 (51.07%), Postives = 288/513 (56.14%), Query Frame = 1 
Query:    1 APLPQTLDDVATGCSQVPDGPATPLYSPQVSRLLASALSTGLEARVFS-KLAG--------DAAAGHG------EGTGRAQVAKLRLGGNRFFQSSWRGVLEALSLHPPRELDLSFASALPRLPSATGXXXXXXXXXXXXXXXTESPRGSREDDAVLSAVSGSLPLSSQRAPAQSLGELLAVTVLPADAPGVETLDLTGSTGLLSSDDCR--QRRGAHGGGAGDTPLGEEPLPLSCGSSSSSMEAFLLLLRDALVSPLCETAHLLFSGVR--------VSPPPPELAAAAPASGGLRPTIAFLPRYAEALCEAASTCASLRCLDLGGCDLSGPVGAAXXXXXXXXXXXXXXXXGEDEAIDDTQEVGFDAACTAVAGGLDRLSLRACGLGVCGLSAVLRALVASPENDRGPGRRRKGPLPRFPGLLDLSDNRPSVSRAGDAAETANDAGGATGEGEADAAALTELAGSVRALRAEGLVSVAVARDPVRPLGRPRASSDFEPA-LVDLSGNRLEF 1461
            AP    LD   +GCSQ+PDGPA  LYSPQVS LLASAL  GLEARV + KLA         D ++G G      E  GRAQV+ LR+G NRF   SW  VLE LS  PPRELDLSFASALP   +ATG                 +P G   +D+  +      P      PAQ+LGELLA TVLPADAPGVETL+LTGSTGLL  DD R  QRRG  GG   + P      PL+C  SS  MEAF+LLLRDAL+SPLCET HLL SGVR                               F PR A++LCEAAS CASLRCLDL GCDLSGPVGAA                      DD  EVG   A     G L RLSLRACGL   GL+AV+RALVA PE    PG RRKG +   P LLDLSDNRP V  A   A    D     G  EAD   LTELAG +R L  E +VSVAV  D  R  GRPR SS  EPA LVDLSGN L+ 
Sbjct: 1204 APSLDVLD--VSGCSQIPDGPAGRLYSPQVSDLLASALRAGLEARVVAGKLAAANGAGRVADGSSGDGGNDERSESDGRAQVSTLRMGNNRFSWESWVDVLEVLSSAPPRELDLSFASALPGRSAATGDGVGTATAAAVAL----TPVGGGNNDSPGAVTPPLRPAP----PAQTLGELLAATVLPADAPGVETLNLTGSTGLLLLDDRRRQQRRGVEGGVGIEDPSE----PLAC-LSSLGMEAFVLLLRDALMSPLCETTHLLLSGVRGPXXXXXXXXXXXXXXXXXXXXXXXXXXAAVFGPRDAKSLCEAASACASLRCLDLAGCDLSGPVGAAAAAAAVSCLISN----------DDEDEVGLGMA----GGVLRRLSLRACGLEAAGLAAVVRALVAEPEGGLEPGTRRKGRV--LPKLLDLSDNRPLVGAAVGTARWEQD----RGLREAD---LTELAGLLRVLEREFMVSVAVTGDQRRAFGRPRVSSGREPAALVDLSGNGLDL 1678
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BLAST of mRNA_H-canaliculatus_F_contig14318.3381.1 vs. uniprot
Match: D8LDQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ0_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.200e-88
Identity = 245/501 (48.90%), Postives = 263/501 (52.50%), Query Frame = 1 
Query:    1 APLPQTLDDVATGCSQVPDGPATPLYSPQVSRLLASALSTGLEARVFS-KLAGDAAAGH--------------GEGTGRAQVAKLRLGGNRFFQSSWRGVLEALSLHPPRELDLSFASALPRLPSATGXXXXXXXXXXXXXXXTESPRGSREDDAVLSAVSGSLPLSSQRAPAQSLGELLAVTVLPADAPGVETLDLTGSTGLLSSDDCRQRRGAHGGGAGDTPLGEEPLPLSCGSSSSSMEAFLLLLRDALVSPLCETAHLLFSGVR--------VSPPPPELAAAAPASGGLRPTIAFLPRYAEALCEAASTCASLRCLDLGGCDLSGPVGAAXXXXXXXXXXXXXXXXGEDEAIDDTQEVGFDAACTAVAGGLDRLSLRACGLGVCGLSAVLRALVASPENDRGPGRRRKGPLPRFPGLLDLSDNRPSVSRAGDAAETANDAGGATGEGEADAAALTELAGSVRALRAEGLVSVAVARDPVRPLGR---PRASSDFEP 1425
            AP  + LD   +GCSQ+PDGP   LYSPQVS LLASALS GLEARV + KLA    AG                E  GRAQV+ LR+G NRF + SW  VLE LS +PPRELDLSFAS LP   +AT         XXXXXXX           AV        P      PAQ+LGELLA TVLPADAPGVETL+LTGSTGLL                          PL+C  SSS MEAFLLLLRD L+SPLCET HLL SGVR                               F PR A++LCEAAS CASLRCLDL GCDLSGPVGAA                       D  EVG   A     G L RLSLRAC LG  GL+ V+RALVA P    GPG RRKG     P LLDLSDNRP    A   A    D G     GEAD   LTELAG VR L  E +VSVAV RD  R  GR   P  SS   P
Sbjct: 1142 APSLEVLD--VSGCSQIPDGPVRRLYSPQVSDLLASALSAGLEARVVAGKLAAATGAGRVADGSGGDGGNDERSESDGRAQVSTLRMGNNRFSRESWGDVLEVLSSNPPRELDLSFASVLPGRSAATADGVVTTATXXXXXXXXXXXXXXXXXGAVT-------PPPRPAPPAQTLGELLAATVLPADAPGVETLNLTGSTGLLLXXXXXXXXXXXX--XXXXXXXXXXAPLAC-PSSSGMEAFLLLLRDTLMSPLCETTHLLLSGVRGPXXXXXXXXXXXXXXXXXXXXXXXXXXAAVFGPRDAKSLCEAASACASLRCLDLAGCDLSGPVGAAAAAAAVSCLISNH----------DEDEVGLGMA----GGRLRRLSLRACALGAAGLAVVVRALVAEPGGGSGPGTRRKGRS--LPKLLDLSDNRPLAGAAVGTARPEQDGG----LGEAD---LTELAGLVRVLEREFMVSVAVTRDQRRAFGRYASPMGSSCITP 1607
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14318.3381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG49_9PHAE1.470e-10151.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDQ0_ECTSI2.200e-8848.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14318contigH-canaliculatus_F_contig14318:237..2054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1464
Cds size1464
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.2320719-CDS-H-canaliculatus_F_contig14318:236..16331622929180.2320719-CDS-H-canaliculatus_F_contig14318:236..1633Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14318 237..1633 +
1696845709.2473862-CDS-H-canaliculatus_F_contig14318:236..16331696845709.2473862-CDS-H-canaliculatus_F_contig14318:236..1633Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14318 237..1633 +
1622929180.2519295-CDS-H-canaliculatus_F_contig14318:1987..20541622929180.2519295-CDS-H-canaliculatus_F_contig14318:1987..2054Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14318 1988..2054 +
1696845709.258729-CDS-H-canaliculatus_F_contig14318:1987..20541696845709.258729-CDS-H-canaliculatus_F_contig14318:1987..2054Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14318 1988..2054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14318.3381.1prot_H-canaliculatus_F_contig14318.3381.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14318 237..2054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14318.3381.1

>prot_H-canaliculatus_F_contig14318.3381.1 ID=prot_H-canaliculatus_F_contig14318.3381.1|Name=mRNA_H-canaliculatus_F_contig14318.3381.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=488bp
APLPQTLDDVATGCSQVPDGPATPLYSPQVSRLLASALSTGLEARVFSKL
AGDAAAGHGEGTGRAQVAKLRLGGNRFFQSSWRGVLEALSLHPPRELDLS
FASALPRLPSATGGGGGGGGGGGGGGGGTESPRGSREDDAVLSAVSGSLP
LSSQRAPAQSLGELLAVTVLPADAPGVETLDLTGSTGLLSSDDCRQRRGA
HGGGAGDTPLGEEPLPLSCGSSSSSMEAFLLLLRDALVSPLCETAHLLFS
GVRVSPPPPELAAAAPASGGLRPTIAFLPRYAEALCEAASTCASLRCLDL
GGCDLSGPVGAAAAAAAVACLIRGGDDDGEDEAIDDTQEVGFDAACTAVA
GGLDRLSLRACGLGVCGLSAVLRALVASPENDRGPGRRRKGPLPRFPGLL
DLSDNRPSVSRAGDAAETANDAGGATGEGEADAAALTELAGSVRALRAEG
LVSVAVARDPVRPLGRPRASSDFEPALVDLSGNRLEF*
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mRNA from alignment at H-canaliculatus_F_contig14318:237..2054+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14318.3381.1 ID=mRNA_H-canaliculatus_F_contig14318.3381.1|Name=mRNA_H-canaliculatus_F_contig14318.3381.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1818bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14318:237..2054+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCCTCTTCCCCAAACTCTCGATGATGTCGCGACAGGCTGCAGCCAAGT
CCCTGATGGCCCCGCCACACCGCTGTACAGCCCGCAGGTCTCGCGCCTGC
TCGCCTCCGCACTGAGCACCGGCCTGGAAGCCAGAGTTTTCAGCAAGCTG
GCCGGCGACGCCGCCGCCGGCCACGGCGAAGGCACGGGGCGGGCGCAGGT
GGCCAAGCTCCGCCTCGGGGGCAACCGCTTCTTCCAGTCGTCTTGGAGGG
GTGTATTAGAGGCCCTATCTTTGCACCCGCCGCGGGAGCTGGATTTGTCC
TTCGCGTCGGCGCTCCCGCGGCTTCCTTCAGCCACCGGTGGCGGTGGCGG
TGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGAACTGAATCGCCTAGAG
GAAGTCGAGAAGACGACGCCGTGTTGTCGGCGGTGAGTGGCTCGCTGCCC
TTGTCGTCGCAGCGGGCGCCGGCGCAGTCGCTCGGCGAGCTGCTGGCGGT
AACGGTCCTCCCGGCCGACGCCCCCGGCGTGGAAACCCTCGACCTCACCG
GCTCCACGGGCCTCCTCTCCTCCGACGATTGCCGGCAGCGTCGCGGGGCA
CACGGGGGCGGGGCGGGAGACACGCCGTTGGGTGAGGAGCCCCTTCCCCT
CTCCTGCGGTTCCTCTTCTTCGTCGATGGAGGCGTTCTTGTTGCTTCTCC
GGGACGCCCTGGTGTCCCCGCTCTGCGAGACTGCGCACCTCCTCTTCTCG
GGCGTCAGGGTCTCGCCCCCTCCCCCGGAACTCGCTGCCGCCGCCCCCGC
TTCTGGCGGGCTGCGGCCGACGATCGCTTTCCTTCCTCGGTACGCCGAAG
CTTTGTGCGAGGCGGCCTCGACGTGCGCCTCTCTGCGGTGCCTAGACCTC
GGAGGCTGCGACCTCTCTGGCCCGGTCGGAGCGGCCGCGGCGGCTGCCGC
GGTGGCGTGCTTGATCCGCGGCGGCGACGACGACGGCGAGGACGAAGCCA
TCGATGACACGCAGGAGGTTGGCTTCGACGCAGCTTGCACTGCGGTCGCC
GGCGGCCTGGATCGACTCAGCCTGCGGGCGTGCGGCCTGGGGGTGTGCGG
TCTATCGGCGGTCCTGCGGGCCCTGGTCGCTTCACCGGAGAACGATCGCG
GGCCGGGGAGGCGGCGGAAGGGTCCCCTGCCGAGGTTTCCTGGACTGTTG
GACCTGTCGGACAACCGGCCTTCGGTCAGCCGTGCCGGCGATGCTGCCGA
AACGGCAAATGACGCCGGAGGGGCGACGGGGGAGGGGGAAGCGGATGCTG
CTGCGTTGACGGAGCTTGCGGGGTCGGTCCGTGCGTTGAGGGCGGAGGGG
TTGGTCTCTGTGGCTGTTGCGCGAGATCCAGTGCGACCGCTCGGAAGGTG
CGACTGACTGCCAGCTGGCATCCCGCGGGGACAGTTTTACGTGTCCGTTT
TACGAGTTTTGAGTGGGAACCTTCCGAGCTCGCCTTTTTTGTTCCCTTTA
GTGTGTGTATGTGTGTGTGGTGGAGCAGCGAGTCTTCCTCTCTATGGATG
ACAAAAAAACAAAAAAACGAAGAGTAGGTTTATTTCACGTAGGTAGGTCA
GAATCAAAAGCATATACCGTCACTTTGACCTCCCAGCTCGTCAACATTGC
CCTCTGGTTTTATTTCTCCCATTCCTCCGTAATATCATGAACCTCTCCGC
TCACCGCCGCACCCCATGCACTCGTCGATTCGGCTGACGTTTTTACCGCA
GGCCCCGTGCTTCCTCGGACTTCGAGCCCGCATTGGTCGATCTCTCTGGT
AACCGCTTAGAATTTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14318:237..2054+

>mRNA_H-canaliculatus_F_contig14318.3381.1 ID=mRNA_H-canaliculatus_F_contig14318.3381.1|Name=mRNA_H-canaliculatus_F_contig14318.3381.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2928bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14318:237..2054+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCCTCTTCCCCAAACTCTCGATGATGTCGCGACAGGCTGCAGCCAAGT
CCCTGATGGCCCCGCCACACCGCTGTACAGCCCGCAGGTCTCGCGCCTGC
TCGCCTCCGCACTGAGCACCGGCCTGGAAGCCAGAGTTTTCAGCAAGCTG
GCCGGCGACGCCGCCGCCGGCCACGGCGAAGGCACGGGGCGGGCGCAGGT
GGCCAAGCTCCGCCTCGGGGGCAACCGCTTCTTCCAGTCGTCTTGGAGGG
GTGTATTAGAGGCCCTATCTTTGCACCCGCCGCGGGAGCTGGATTTGTCC
TTCGCGTCGGCGCTCCCGCGGCTTCCTTCAGCCACCGGTGGCGGTGGCGG
TGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGAACTGAATCGCCTAGAG
GAAGTCGAGAAGACGACGCCGTGTTGTCGGCGGTGAGTGGCTCGCTGCCC
TTGTCGTCGCAGCGGGCGCCGGCGCAGTCGCTCGGCGAGCTGCTGGCGGT
AACGGTCCTCCCGGCCGACGCCCCCGGCGTGGAAACCCTCGACCTCACCG
GCTCCACGGGCCTCCTCTCCTCCGACGATTGCCGGCAGCGTCGCGGGGCA
CACGGGGGCGGGGCGGGAGACACGCCGTTGGGTGAGGAGCCCCTTCCCCT
CTCCTGCGGTTCCTCTTCTTCGTCGATGGAGGCGTTCTTGTTGCTTCTCC
GGGACGCCCTGGTGTCCCCGCTCTGCGAGACTGCGCACCTCCTCTTCTCG
GGCGTCAGGGTCTCGCCCCCTCCCCCGGAACTCGCTGCCGCCGCCCCCGC
TTCTGGCGGGCTGCGGCCGACGATCGCTTTCCTTCCTCGGTACGCCGAAG
CTTTGTGCGAGGCGGCCTCGACGTGCGCCTCTCTGCGGTGCCTAGACCTC
GGAGGCTGCGACCTCTCTGGCCCGGTCGGAGCGGCCGCGGCGGCTGCCGC
GGTGGCGTGCTTGATCCGCGGCGGCGACGACGACGGCGAGGACGAAGCCA
TCGATGACACGCAGGAGGTTGGCTTCGACGCAGCTTGCACTGCGGTCGCC
GGCGGCCTGGATCGACTCAGCCTGCGGGCGTGCGGCCTGGGGGTGTGCGG
TCTATCGGCGGTCCTGCGGGCCCTGGTCGCTTCACCGGAGAACGATCGCG
GGCCGGGGAGGCGGCGGAAGGGTCCCCTGCCGAGGTTTCCTGGACTGTTG
GACCTGTCGGACAACCGGCCTTCGGTCAGCCGTGCCGGCGATGCTGCCGA
AACGGCAAATGACGCCGGAGGGGCGACGGGGGAGGGGGAAGCGGATGCTG
CTGCGTTGACGGAGCTTGCGGGGTCGGTCCGTGCGTTGAGGGCGGAGGGG
TTGGTCTCTGTGGCTGTTGCGCGAGATCCAGTGCGACCGCTCGGAAGGCC
CCTCTTCCCCAAACTCTCGATGATGTCGCGACAGGCTGCAGCCAAGTCCC
TGATGGCCCCGCCACACCGCTGTACAGCCCGCAGGTCTCGCGCCTGCTCG
CCTCCGCACTGAGCACCGGCCTGGAAGCCAGAGTTTTCAGCAAGCTGGCC
GGCGACGCCGCCGCCGGCCACGGCGAAGGCACGGGGCGGGCGCAGGTGGC
CAAGCTCCGCCTCGGGGGCAACCGCTTCTTCCAGTCGTCTTGGAGGGGTG
TATTAGAGGCCCTATCTTTGCACCCGCCGCGGGAGCTGGATTTGTCCTTC
GCGTCGGCGCTCCCGCGGCTTCCTTCAGCCACCGGTGGCGGTGGCGGTGG
TGGTGGTGGTGGTGGTGGTGGTGGTGGCGGAACTGAATCGCCTAGAGGAA
GTCGAGAAGACGACGCCGTGTTGTCGGCGGTGAGTGGCTCGCTGCCCTTG
TCGTCGCAGCGGGCGCCGGCGCAGTCGCTCGGCGAGCTGCTGGCGGTAAC
GGTCCTCCCGGCCGACGCCCCCGGCGTGGAAACCCTCGACCTCACCGGCT
CCACGGGCCTCCTCTCCTCCGACGATTGCCGGCAGCGTCGCGGGGCACAC
GGGGGCGGGGCGGGAGACACGCCGTTGGGTGAGGAGCCCCTTCCCCTCTC
CTGCGGTTCCTCTTCTTCGTCGATGGAGGCGTTCTTGTTGCTTCTCCGGG
ACGCCCTGGTGTCCCCGCTCTGCGAGACTGCGCACCTCCTCTTCTCGGGC
GTCAGGGTCTCGCCCCCTCCCCCGGAACTCGCTGCCGCCGCCCCCGCTTC
TGGCGGGCTGCGGCCGACGATCGCTTTCCTTCCTCGGTACGCCGAAGCTT
TGTGCGAGGCGGCCTCGACGTGCGCCTCTCTGCGGTGCCTAGACCTCGGA
GGCTGCGACCTCTCTGGCCCGGTCGGAGCGGCCGCGGCGGCTGCCGCGGT
GGCGTGCTTGATCCGCGGCGGCGACGACGACGGCGAGGACGAAGCCATCG
ATGACACGCAGGAGGTTGGCTTCGACGCAGCTTGCACTGCGGTCGCCGGC
GGCCTGGATCGACTCAGCCTGCGGGCGTGCGGCCTGGGGGTGTGCGGTCT
ATCGGCGGTCCTGCGGGCCCTGGTCGCTTCACCGGAGAACGATCGCGGGC
CGGGGAGGCGGCGGAAGGGTCCCCTGCCGAGGTTTCCTGGACTGTTGGAC
CTGTCGGACAACCGGCCTTCGGTCAGCCGTGCCGGCGATGCTGCCGAAAC
GGCAAATGACGCCGGAGGGGCGACGGGGGAGGGGGAAGCGGATGCTGCTG
CGTTGACGGAGCTTGCGGGGTCGGTCCGTGCGTTGAGGGCGGAGGGGTTG
GTCTCTGTGGCTGTTGCGCGAGATCCAGTGCGACCGCTCGGAAGGCCCCG
TGCTTCCTCGGACTTCGAGCCCGCATTGGTCGATCTCTCTGGTAACCGCT
TAGAATTTTGAGCCCCGTGCTTCCTCGGACTTCGAGCCCGCATTGGTCGA
TCTCTCTGGTAACCGCTTAGAATTTTGA
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