mRNA_H-canaliculatus_F_contig14314.3380.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14314.3380.1
Unique NamemRNA_H-canaliculatus_F_contig14314.3380.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14314.3380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14314contigH-canaliculatus_F_contig14314:2242..2606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.1574526-CDS-H-canaliculatus_F_contig14314:2241..22791622929180.1574526-CDS-H-canaliculatus_F_contig14314:2241..2279Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14314 2242..2279 +
1696845709.2141101-CDS-H-canaliculatus_F_contig14314:2241..22791696845709.2141101-CDS-H-canaliculatus_F_contig14314:2241..2279Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14314 2242..2279 +
1622929180.1771255-CDS-H-canaliculatus_F_contig14314:2298..26051622929180.1771255-CDS-H-canaliculatus_F_contig14314:2298..2605Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14314 2299..2605 +
1696845709.226155-CDS-H-canaliculatus_F_contig14314:2298..26051696845709.226155-CDS-H-canaliculatus_F_contig14314:2298..2605Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14314 2299..2605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14314.3380.1prot_H-canaliculatus_F_contig14314.3380.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14314 2242..2605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14314.3380.1

>prot_H-canaliculatus_F_contig14314.3380.1 ID=prot_H-canaliculatus_F_contig14314.3380.1|Name=mRNA_H-canaliculatus_F_contig14314.3380.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
TLHRTRQERPLRHRLPCASRLSEETAGASIGRTGARVLGKSSKEPSLRGG
TLAKRHQRSFFSLLCRFGRCFHVPAPIAVLSWCSAGHSCVVPDPVSLFRS
SCDMVHRLFDDEPSL
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mRNA from alignment at H-canaliculatus_F_contig14314:2242..2606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14314.3380.1 ID=mRNA_H-canaliculatus_F_contig14314.3380.1|Name=mRNA_H-canaliculatus_F_contig14314.3380.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=365bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14314:2242..2606+ (Hapterophycus canaliculatus Oshoro5f female)
ACGCTCCACCGGACGCGGCAGGAGAGACCCTTGCGCCAGCCGGCTCCCTT
GCGCCAGCCGGCTCCCTTGCGCCAGCCGGCTCTCCGAAGAAACGGCGGGA
GCCTCGATCGGTCGAACGGGAGCTCGGGTGTTGGGAAAAAGCTCGAAGGA
GCCCAGTCTTCGTGGTGGGACACTGGCGAAGAGGCACCAACGTAGTTTTT
TCTCGCTTCTGTGCCGTTTCGGTCGCTGTTTTCATGTCCCAGCGCCGATT
GCGGTGTTGAGCTGGTGCTCGGCAGGGCATTCTTGCGTCGTCCCCGACCC
TGTTTCTTTGTTCCGTAGCTCCTGCGACATGGTGCACAGGTTATTTGATG
ACGAACCCTCCCTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14314:2242..2606+

>mRNA_H-canaliculatus_F_contig14314.3380.1 ID=mRNA_H-canaliculatus_F_contig14314.3380.1|Name=mRNA_H-canaliculatus_F_contig14314.3380.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14314:2242..2606+ (Hapterophycus canaliculatus Oshoro5f female)
ACGCTCCACCGGACGCGGCAGGAGAGACCCTTGCGCCAACGCTCCACCGG
ACGCGGCAGGAGAGACCCTTGCGCCACCGGCTCCCTTGCGCCAGCCGGCT
CTCCGAAGAAACGGCGGGAGCCTCGATCGGTCGAACGGGAGCTCGGGTGT
TGGGAAAAAGCTCGAAGGAGCCCAGTCTTCGTGGTGGGACACTGGCGAAG
AGGCACCAACGTAGTTTTTTCTCGCTTCTGTGCCGTTTCGGTCGCTGTTT
TCATGTCCCAGCGCCGATTGCGGTGTTGAGCTGGTGCTCGGCAGGGCATT
CTTGCGTCGTCCCCGACCCTGTTTCTTTGTTCCGTAGCTCCTGCGACATG
GTGCACAGGTTATTTGATGACGAACCCTCCCTGCCGGCTCCCTTGCGCCA
GCCGGCTCTCCGAAGAAACGGCGGGAGCCTCGATCGGTCGAACGGGAGCT
CGGGTGTTGGGAAAAAGCTCGAAGGAGCCCAGTCTTCGTGGTGGGACACT
GGCGAAGAGGCACCAACGTAGTTTTTTCTCGCTTCTGTGCCGTTTCGGTC
GCTGTTTTCATGTCCCAGCGCCGATTGCGGTGTTGAGCTGGTGCTCGGCA
GGGCATTCTTGCGTCGTCCCCGACCCTGTTTCTTTGTTCCGTAGCTCCTG
CGACATGGTGCACAGGTTATTTGATGACGAACCCTCCCTG
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