mRNA_H-canaliculatus_F_contig14311.3379.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14311.3379.1
Unique NamemRNA_H-canaliculatus_F_contig14311.3379.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Match: A0A836CKF2_9STRA (Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.190e-30
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    1 KMDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEEGKIRHVGLTNFDTKRLEIITDKGIKIASNQV 246
            KM R  V+A +G+SL RM T+ +DL+QFHWW YD PYY+DAL H++++  EG IRH+GLTNFDT+RL++ITDKGI + SNQV
Sbjct:  156 KMPRDLVDAAIGRSLDRMHTKRLDLLQFHWWDYDSPYYMDALHHMQDMVAEGSIRHLGLTNFDTQRLQLITDKGINVVSNQV 237          
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Match: F9CX03_9ARCH (Aldo/keto reductase n=2 Tax=Nitrosarchaeum TaxID=1007082 RepID=F9CX03_9ARCH)

HSP 1 Score: 110 bits (275), Expect = 1.930e-27
Identity = 49/81 (60.49%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    4 MDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEEGKIRHVGLTNFDTKRLEIITDKGIKIASNQV 246
            M ++ V   V QSL +M TE IDL+QFHWW Y+ P YLDALS+L +L++EGKI+H+GLTNFDT+R++I+TD+G K+ SNQV
Sbjct:   92 MSKSIVEYHVDQSLKKMNTETIDLIQFHWWDYNDPSYLDALSNLTKLQQEGKIKHLGLTNFDTERIKIMTDRGFKLISNQV 172          
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Match: UPI000AC14166 (aldo/keto reductase n=1 Tax=Candidatus Nitrosocosmicus hydrocola TaxID=1826872 RepID=UPI000AC14166)

HSP 1 Score: 109 bits (272), Expect = 6.450e-27
Identity = 44/82 (53.66%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    1 KMDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEEGKIRHVGLTNFDTKRLEIITDKGIKIASNQV 246
            K+ ++ V   +  S++RM  E +DL+QFHWW Y+ PYY+DALS+L +L++EGK++HVGLTNFDT+RL+I+ D G++I SNQ+
Sbjct:  102 KITQSMVRENIQSSISRMGVESLDLLQFHWWDYNNPYYMDALSYLSDLRDEGKVKHVGLTNFDTERLQIMNDAGLQILSNQI 183          
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Match: A0A7J9RCF4_9ARCH (Aldo/keto reductase n=3 Tax=Nitrosopumilaceae archaeon TaxID=2202732 RepID=A0A7J9RCF4_9ARCH)

HSP 1 Score: 108 bits (271), Expect = 7.840e-27
Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    4 MDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEEGKIRHVGLTNFDTKRLEIITDKGIKIASNQV 246
            M ++ V   + QSL +M T  +DL+QFHWW Y+ P Y+DAL HL +L+++GKI+HVGLTNFDT+RL+IIT++GI+I SNQV
Sbjct:   95 MSKSIVEYYIDQSLQKMNTAQLDLIQFHWWDYNDPSYIDALVHLSDLRDKGKIKHVGLTNFDTERLQIITEQGIRIVSNQV 175          
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Match: A0RYR0_CENSY (Oxidoreductase n=1 Tax=Cenarchaeum symbiosum (strain A) TaxID=414004 RepID=A0RYR0_CENSY)

HSP 1 Score: 107 bits (268), Expect = 1.930e-26
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    4 MDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEEGKIRHVGLTNFDTKRLEIITDKGIKIASNQV 246
            M R+ V   + +SL RM T+ IDL+QFHWW Y+ P YLDAL HL+ L+ EGKIRH+GLTNFDT+RL +I D GI+  SNQV
Sbjct:   90 MTRSIVEHHIDESLRRMGTDSIDLLQFHWWDYNDPAYLDALDHLDALRAEGKIRHLGLTNFDTERLRLIVDHGIRPVSNQV 170          
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Match: UPI00199E456F (Aldo/keto reductase n=1 Tax=Chloroflexales bacterium TaxID=2725990 RepID=UPI00199E456F)

HSP 1 Score: 107 bits (268), Expect = 2.370e-26
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    4 MDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEEGKIRHVGLTNFDTKRLEIITDKGIKIASNQV 246
            M R  V A + QSL RM  E +DL+QFHWW Y  P YLDAL HL  L++ GKIRH+ LTNFDT+RLEII   GI++ SNQV
Sbjct:   99 MPRPLVEAAINQSLRRMGVETLDLLQFHWWDYSNPAYLDALGHLAALRDAGKIRHLALTNFDTQRLEIIAQHGIRVVSNQV 179          
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Match: A0A484IB17_9ARCH (General stress protein 69 n=1 Tax=Candidatus Nitrosocosmicus franklandus TaxID=1798806 RepID=A0A484IB17_9ARCH)

HSP 1 Score: 107 bits (268), Expect = 2.480e-26
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 KMDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEEGKIRHVGLTNFDTKRLEIITDKGIKIASNQV 246
            K+ ++ VN  +  SL RM  E +DL+QFHWW YD PYY+DALS L +L++EGKI+HVGLTNFDT+ L+II D   +I SNQ+
Sbjct:  102 KITKSIVNESIQSSLDRMGVESLDLLQFHWWDYDNPYYMDALSFLSDLRDEGKIKHVGLTNFDTEHLQIILDADTQILSNQI 183          
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Match: A0A521TT64_9ARCH (Aldo/keto reductase n=1 Tax=Nitrosarchaeum sp. TaxID=2026886 RepID=A0A521TT64_9ARCH)

HSP 1 Score: 107 bits (267), Expect = 2.880e-26
Identity = 45/81 (55.56%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    4 MDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEEGKIRHVGLTNFDTKRLEIITDKGIKIASNQV 246
            M ++ V   + QSL +M T+ +DL+QFHWW Y+ P YLDAL+HL +L++EGKI+H+GLTNFDT+R++I+ +KG K+ SNQV
Sbjct:   92 MTKSIVEYHIDQSLHKMNTDSLDLVQFHWWDYNNPSYLDALNHLSKLRDEGKIKHLGLTNFDTQRIKIMIEKGFKLVSNQV 172          
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Match: K9TV43_CHRTP (Aldo/keto reductase n=5 Tax=Chroococcidiopsis TaxID=54298 RepID=K9TV43_CHRTP)

HSP 1 Score: 107 bits (267), Expect = 3.260e-26
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 KMDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEEGKIRHVGLTNFDTKRLEIITDKGIKIASNQV 246
            KM R  V   + +SLARM+ E +DL+QFHWW Y    Y+DAL++L EL++EGKI+H+ LTNFDT+RL+II++ GIKI SNQV
Sbjct:   98 KMTRRVVEQNIDRSLARMRVETLDLLQFHWWEYRDKNYIDALTYLAELQQEGKIKHLALTNFDTERLKIISEAGIKIVSNQV 179          
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Match: A0A6L9IGF0_9CHLR (Aldo/keto reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L9IGF0_9CHLR)

HSP 1 Score: 107 bits (266), Expect = 4.570e-26
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    4 MDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEEGKIRHVGLTNFDTKRLEIITDKGIKIASNQV 246
            M RATV   V  SL RM+ + +DL+QFHWW Y  P YLDAL HL +L++EGK+RHV LTNFDT+ L  IT+ GI+I SNQV
Sbjct:   99 MSRATVERAVEVSLQRMQVQTLDLLQFHWWEYGNPAYLDALKHLADLRDEGKLRHVALTNFDTEHLARITEAGIRIVSNQV 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14311.3379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKF2_9STRA1.190e-3062.20Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=... [more]
F9CX03_9ARCH1.930e-2760.49Aldo/keto reductase n=2 Tax=Nitrosarchaeum TaxID=1... [more]
UPI000AC141666.450e-2753.66aldo/keto reductase n=1 Tax=Candidatus Nitrosocosm... [more]
A0A7J9RCF4_9ARCH7.840e-2758.02Aldo/keto reductase n=3 Tax=Nitrosopumilaceae arch... [more]
A0RYR0_CENSY1.930e-2660.49Oxidoreductase n=1 Tax=Cenarchaeum symbiosum (stra... [more]
UPI00199E456F2.370e-2660.49Aldo/keto reductase n=1 Tax=Chloroflexales bacteri... [more]
A0A484IB17_9ARCH2.480e-2657.32General stress protein 69 n=1 Tax=Candidatus Nitro... [more]
A0A521TT64_9ARCH2.880e-2655.56Aldo/keto reductase n=1 Tax=Nitrosarchaeum sp. Tax... [more]
K9TV43_CHRTP3.260e-2658.54Aldo/keto reductase n=5 Tax=Chroococcidiopsis TaxI... [more]
A0A6L9IGF0_9CHLR4.570e-2660.49Aldo/keto reductase n=1 Tax=Chloroflexi bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14311contigH-canaliculatus_F_contig14311:1198..2483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score105.1
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog251229.Chro_1190
EggNOG free text desc.PFAM Aldo keto reductase family
EggNOG OGs1G1XK@1117,3VIJJ@52604,COG0667@1,COG0667@2
COG Functional cat.C
Best tax levelPleurocapsales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADP-dependent oxidoreductase domain
Ec32 orthologEc-25_001470.1
Exons2
Model size246
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14311.3379.1prot_H-canaliculatus_F_contig14311.3379.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14311 1201..2483 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.078965-UTR-H-canaliculatus_F_contig14311:1197..12001622929180.078965-UTR-H-canaliculatus_F_contig14311:1197..1200Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14311 1198..1200 +
1696845709.1766305-UTR-H-canaliculatus_F_contig14311:1197..12001696845709.1766305-UTR-H-canaliculatus_F_contig14311:1197..1200Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14311 1198..1200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.0921054-CDS-H-canaliculatus_F_contig14311:1200..12781622929180.0921054-CDS-H-canaliculatus_F_contig14311:1200..1278Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14311 1201..1278 +
1696845709.1885402-CDS-H-canaliculatus_F_contig14311:1200..12781696845709.1885402-CDS-H-canaliculatus_F_contig14311:1200..1278Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14311 1201..1278 +
1622929180.110757-CDS-H-canaliculatus_F_contig14311:2318..24831622929180.110757-CDS-H-canaliculatus_F_contig14311:2318..2483Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14311 2319..2483 +
1696845709.1999269-CDS-H-canaliculatus_F_contig14311:2318..24831696845709.1999269-CDS-H-canaliculatus_F_contig14311:2318..2483Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14311 2319..2483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14311.3379.1

>prot_H-canaliculatus_F_contig14311.3379.1 ID=prot_H-canaliculatus_F_contig14311.3379.1|Name=mRNA_H-canaliculatus_F_contig14311.3379.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=81bp
MDRATVNAGVGQSLARMKTEPIDLMQFHWWSYDVPYYLDALSHLEELKEE
GKIRHVGLTNFDTKRLEIITDKGIKIASNQV
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mRNA from alignment at H-canaliculatus_F_contig14311:1198..2483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14311.3379.1 ID=mRNA_H-canaliculatus_F_contig14311.3379.1|Name=mRNA_H-canaliculatus_F_contig14311.3379.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1286bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14311:1198..2483+ (Hapterophycus canaliculatus Oshoro5f female)
AAGATGGATCGGGCTACGGTAAACGCTGGAGTCGGACAGTCCCTGGCTCG GATGAAAACGGAGCCGATCGACCTCATGCAGGTGGATGCGTCGTAGTTCC TGCGGGAGCAATCACGGATTTGAGTCGTGGGTGCCGGAGCTGTTGCCATT GCTGTTGTTGCTGACGTAAGTGTTGCTGCCAGCTGTGTTGCTTTCTTCCT GTGGAGAATTGAGCGTGACCAATTCGTTCGACGGCCGCAAAAATCTGTTG GATAAGTAGCGAATAACAGGTTTGACAGTTAATTCTTCACAGACATACTC GCAATCAGATCCCAAGGACACAACATAGTCTTCGAAATCGTGAGAGCTAG AAATTTGTCGTTGGAACTGTCAAGTTTCAGAAAAGTAGGCATGCGAATAC CAGATATTTCAGGTGTCTCATTGCACTGCTTGTTGAGCGCGTTGACGATG ACGATGACGATGACGCCAAACGTCGGCGGACTGGACGGGTGGCTGTGCCA AGCGCCTCTTGCCTGACTCGACTACTGGTGTGGCGCAAAGTGTTTGGGCT GGACGTTGGTAGACAAGCGCAGCTGGAACCCCTCGACTGCTTCGTGGGAG CGTGTCGATACCTGGCGCGTAGTTGCATGGTGTCCGCAACCGGGTGCTTT GGTGTTGAAATATCTTAAGATTGCGCGCAGTTTTCCTGGTGGTCGTGAGA CGTGCCCTCTACTTTGTGAGTTAGCACTGGACGGGAGCAACCTGGGACAC ATGGTTGCGCAGGCATCGAGAGATGTAGGGATCCGTGGTGGTTGTAGCTG CTTGTGAAAGGTTCGTGGAATAGGTGCCGCAACGGGACACCAACCCAACC CGCATTCGCGCTCTTGCTCTGAACCGCAGGCCGATCGTGGAAAAGTCCCA CCCCCTTTACGTTCTGCGCTCTAGCCGGCCTTCCAAATAACCACACCTTT GGGAATTGAGTGTCGCATGATGAACGTTGAAGTCACCGATGGCTCAAAAG TGTTCTGCGGTTCTCCAGGACAGTGCTACAATTGTACTGTACCGAGCGTT TCTTTTGGGCTCTGGATGCATTTGGAATATCTGGCGTTCTTCGAAACGTC TGCAACCCGGCCGACCCGCAGTTCCACTGGTGGTCCTATGACGTTCCGTA CTACCTGGATGCCCTGAGCCACCTTGAGGAGCTGAAGGAGGAAGGCAAGA TCAGGCACGTCGGCCTCACCAATTTCGACACCAAGCGCCTTGAGATCATC ACGGACAAGGGCATCAAGATCGCCTCCAACCAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14311:1198..2483+

>mRNA_H-canaliculatus_F_contig14311.3379.1 ID=mRNA_H-canaliculatus_F_contig14311.3379.1|Name=mRNA_H-canaliculatus_F_contig14311.3379.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14311:1198..2483+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATCGGGCTACGGTAAACGCTGGAGTCGGACAGTCCCTGGCTCGGAT
GAAAACGGAGCCGATCGACCTCATGCAGATGGATCGGGCTACGGTAAACG
CTGGAGTCGGACAGTCCCTGGCTCGGATGAAAACGGAGCCGATCGACCTC
ATGCAGTTCCACTGGTGGTCCTATGACGTTCCGTACTACCTGGATGCCCT
GAGCCACCTTGAGGAGCTGAAGGAGGAAGGCAAGATCAGGCACGTCGGCC
TCACCAATTTCGACACCAAGCGCCTTGAGATCATCACGGACAAGGGCATC
AAGATCGCCTCCAACCAGGTATTCCACTGGTGGTCCTATGACGTTCCGTA
CTACCTGGATGCCCTGAGCCACCTTGAGGAGCTGAAGGAGGAAGGCAAGA
TCAGGCACGTCGGCCTCACCAATTTCGACACCAAGCGCCTTGAGATCATC
ACGGACAAGGGCATCAAGATCGCCTCCAACCAGGTA
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