mRNA_H-canaliculatus_F_contig14309.3378.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14309.3378.1
Unique NamemRNA_H-canaliculatus_F_contig14309.3378.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14309.3378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14309contigH-canaliculatus_F_contig14309:1629..2487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size860
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.986641-CDS-H-canaliculatus_F_contig14309:1628..21171622929179.986641-CDS-H-canaliculatus_F_contig14309:1628..2117Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14309 1629..2117 +
1696845709.1567872-CDS-H-canaliculatus_F_contig14309:1628..21171696845709.1567872-CDS-H-canaliculatus_F_contig14309:1628..2117Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14309 1629..2117 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.0006757-UTR-H-canaliculatus_F_contig14309:2117..24871622929180.0006757-UTR-H-canaliculatus_F_contig14309:2117..2487Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14309 2118..2487 +
1696845709.1666567-UTR-H-canaliculatus_F_contig14309:2117..24871696845709.1666567-UTR-H-canaliculatus_F_contig14309:2117..2487Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14309 2118..2487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14309.3378.1prot_H-canaliculatus_F_contig14309.3378.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14309 1629..2117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14309.3378.1

>prot_H-canaliculatus_F_contig14309.3378.1 ID=prot_H-canaliculatus_F_contig14309.3378.1|Name=mRNA_H-canaliculatus_F_contig14309.3378.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=163bp
HGKIIRSPGPDPKKRRGGVGRPYRSAGGPRAKGGLSPPRKKKQIREEKGS
AGRRTTPLSWPPTVLAPGHRLRSYSQRGSDPINQCCSARLANAGVSFLFP
LTNHEIPSLHALCPRLRFCRVNLDSRLTVAGRCAIALVASGRVGGGVKQE
ETTSEDRSTYRR*
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mRNA from alignment at H-canaliculatus_F_contig14309:1629..2487+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14309.3378.1 ID=mRNA_H-canaliculatus_F_contig14309.3378.1|Name=mRNA_H-canaliculatus_F_contig14309.3378.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=859bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14309:1629..2487+ (Hapterophycus canaliculatus Oshoro5f female)
CATGGAAAAATCATCCGTAGCCCCGGACCCGACCCAAAAAAACGCCGCGG
AGGAGTTGGGAGACCGTACCGATCAGCAGGGGGTCCACGAGCGAAAGGGG
GCCTCTCGCCGCCGCGAAAAAAGAAACAAATCCGAGAAGAGAAAGGGTCG
GCAGGCCGGCGTACCACGCCCCTGTCGTGGCCTCCCACGGTGTTGGCTCC
GGGGCACCGGCTTCGGTCTTATTCCCAACGTGGCTCTGATCCTATAAACC
AATGCTGCTCTGCTCGCTTGGCCAACGCCGGCGTCTCTTTTCTCTTCCCC
CTTACGAACCATGAAATCCCTTCCCTTCATGCATTGTGTCCTCGGCTGCG
CTTTTGTCGAGTAAACCTCGACTCTAGACTGACGGTGGCCGGAAGGTGCG
CTATCGCGCTCGTAGCGAGCGGACGGGTAGGGGGGGGGGTTAAACAGGAA
GAAACAACAAGCGAGGATCGGAGCACGTACCGGAGGTGAACGACTTCGCG
CGTTCGCTTCTGAAACACCCCAAAAAAAGAAAACGCGACACATGACACAT
TCGGTCCACTAATAAAAAACAAGTCGAGCTTGCCACACACCCCTCTCCCT
CAACAAGAAGCTGGTCCCACCCCTCGGTCGAACCTGCTGGTCGGGGACGA
GCTTTGCAAGCGCTTGAATCCTACCCTACACCTCGAGCCGCCGCTGTGGC
AGAACATCCACCCAAGGAAGCAAGACTTCAGAGAAGAGATCGGGGTGCTG
GTTCGCTCAAAGACAACGAAGCTAATCACGAACGGTCCTGCTTCCTGTTT
TACTTTTAACCCAGGCCGATTCTTCGCTCGCGCCCCAACCAAGTTGCACA
CGGAACATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14309:1629..2487+

>mRNA_H-canaliculatus_F_contig14309.3378.1 ID=mRNA_H-canaliculatus_F_contig14309.3378.1|Name=mRNA_H-canaliculatus_F_contig14309.3378.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=978bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14309:1629..2487+ (Hapterophycus canaliculatus Oshoro5f female)
CATGGAAAAATCATCCGTAGCCCCGGACCCGACCCAAAAAAACGCCGCGG
AGGAGTTGGGAGACCGTACCGATCAGCAGGGGGTCCACGAGCGAAAGGGG
GCCTCTCGCCGCCGCGAAAAAAGAAACAAATCCGAGAAGAGAAAGGGTCG
GCAGGCCGGCGTACCACGCCCCTGTCGTGGCCTCCCACGGTGTTGGCTCC
GGGGCACCGGCTTCGGTCTTATTCCCAACGTGGCTCTGATCCTATAAACC
AATGCTGCTCTGCTCGCTTGGCCAACGCCGGCGTCTCTTTTCTCTTCCCC
CTTACGAACCATGAAATCCCTTCCCTTCATGCATTGTGTCCTCGGCTGCG
CTTTTGTCGAGTAAACCTCGACTCTAGACTGACGGTGGCCGGAAGGTGCG
CTATCGCGCTCGTAGCGAGCGGACGGGTAGGGGGGGGGGTTAAACAGGAA
GAAACAACAAGCGAGGATCGGAGCACGTACCGGAGGTGACATGGAAAAAT
CATCCGTAGCCCCGGACCCGACCCAAAAAAACGCCGCGGAGGAGTTGGGA
GACCGTACCGATCAGCAGGGGGTCCACGAGCGAAAGGGGGCCTCTCGCCG
CCGCGAAAAAAGAAACAAATCCGAGAAGAGAAAGGGTCGGCAGGCCGGCG
TACCACGCCCCTGTCGTGGCCTCCCACGGTGTTGGCTCCGGGGCACCGGC
TTCGGTCTTATTCCCAACGTGGCTCTGATCCTATAAACCAATGCTGCTCT
GCTCGCTTGGCCAACGCCGGCGTCTCTTTTCTCTTCCCCCTTACGAACCA
TGAAATCCCTTCCCTTCATGCATTGTGTCCTCGGCTGCGCTTTTGTCGAG
TAAACCTCGACTCTAGACTGACGGTGGCCGGAAGGTGCGCTATCGCGCTC
GTAGCGAGCGGACGGGTAGGGGGGGGGGTTAAACAGGAAGAAACAACAAG
CGAGGATCGGAGCACGTACCGGAGGTGA
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