mRNA_H-canaliculatus_F_contig143.3370.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig143.3370.1
Unique NamemRNA_H-canaliculatus_F_contig143.3370.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Match: D7FLK1_ECTSI (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK1_ECTSI)

HSP 1 Score: 492 bits (1266), Expect = 3.570e-165
Identity = 248/322 (77.02%), Postives = 277/322 (86.02%), Query Frame = 3 
Query:  234 GEPAPEEDLTKVTVFNVGLHATLVQFEKILKANAIKYKKAKKTPATTHGVLTFETAEQRAVAMDKLGKLKGARGGELMYAVLSKQKQ-----RGDKRGAAGGEN-GKGND-SKRQRQDQEPRTVAQATASLYGVKTYPEQLAFKEETLMNDLFLKLPAVVRNEWDKRFREWKRNQGMKKGAVAGSNANKPAELRCPSWCKMFKRRDGNVPFDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVESPKDCPQVHRDMKKLCAQMDTFMRSSAFPLYDDAAKKGVWRFLVVRRSVADNETMIMIVINPT 1178
            GEPAP E+LTKVTVFNVG HATL QFEKILK N+++YK+AKKTP+ THG LTFETAEQRAVAM++L K+ GARGGELM+AVL++QKQ     RG+KR A  G++ G+G D SKR RQ+ E +TVAQATASLYGVKTYPEQLAFKE+TLM+DLFLKLP V+RNEWDKRFREWKRNQGMK+G   G   NKPAELRCP+WC+MFKRRDG VPFDV PIVP+PE EGYRNKCEFTLSL+EDGLAT GFR+GR+Q GVPITVESPKDCPQVH DMKKLC QMD FMRSS FPLYDDA KKGVWR LV RRS AD E M M+VINPT
Sbjct:   65 GEPAPGEELTKVTVFNVGKHATLAQFEKILKNNSVQYKRAKKTPSITHGTLTFETAEQRAVAMEQLRKIVGARGGELMFAVLARQKQNNDIGRGNKRSARDGDDDGRGGDASKRPRQEAERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKLPIVIRNEWDKRFREWKRNQGMKQGG-GGGTLNKPAELRCPAWCRMFKRRDGTVPFDVSPIVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGRFQAGVPITVESPKDCPQVHGDMKKLCVQMDAFMRSSPFPLYDDATKKGVWRLLVARRSAADKEGMAMVVINPT 385
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BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Match: A0A6H5J9G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9G9_9PHAE)

HSP 1 Score: 394 bits (1011), Expect = 4.270e-132
Identity = 198/269 (73.61%), Postives = 229/269 (85.13%), Query Frame = 3 
Query:  234 GEPAPEEDLTKVTVFNVGLHATLVQFEKILKANAIKYKKAKKTPATTHGVLTFETAEQRAVAMDKLGKLKGARGGELMYAVLSKQKQRGD------KRGAAGGENGKG-NDSKRQRQDQEPRTVAQATASLYGVKTYPEQLAFKEETLMNDLFLKLPAVVRNEWDKRFREWKRNQGMKKGAVAGSNANKPAELRCPSWCKMFKRRDGNVPFDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVESPKDCPQVHR 1019
            G+PAP E+LTKVTVFNVG HATL QFEKILK N ++YK+AKKTP+ THG LTFETA QRAVAM++LGK+ GARGGELM+AVL++QKQ         +    G ++G+G N SKR RQ+ E +TVAQATASLYGVKTYPEQLAFKE+TLM+DLFLKLP V+RNEWDKRFREWKRNQG+K+ +  G+  NKPAELRCP+WC+MFKRRDG VPFDV PIVP+PE EGYRNKCEFTLSL+EDGLAT GFR+GR+Q GVPITVESPKDCPQV R
Sbjct:   60 GKPAPGEELTKVTVFNVGKHATLAQFEKILKNNGVEYKRAKKTPSITHGTLTFETAAQRAVAMEQLGKIVGARGGELMFAVLARQKQNXXXXXXXXRNAREGDDDGRGGNASKRSRQEVERKTVAQATASLYGVKTYPEQLAFKEKTLMDDLFLKLPLVIRNEWDKRFREWKRNQGVKQDSGGGA-LNKPAELRCPAWCRMFKRRDGTVPFDVSPIVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGRFQAGVPITVESPKDCPQVER 327
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BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Match: A0A662XY21_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XY21_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.110e-18
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 3 
Query:  783 AELRCPSWCKMFKRRDGNVPFDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVESPKDCPQVHRDMKKLCAQMDTFMRSSAFPLYDDAAKKGVWRFLVVRRSVADNETMIMIVINP 1175
            AEL+   +      +    P D   I  SP  EGYRNKCEF+  L  +     GFR G +++G  + V  P +C  V   MK +CA M   + +S  P+YD   K GVWR L VR+SVA N+ M+M+ +NP
Sbjct:  454 AELKGAKFTGFASHKGLCCPMDS--IHASPVTEGYRNKCEFSFGLDAEDKPCLGFRLGLFREG-SVVVSKPDECVNVSSTMKAVCAVMQELVETSGIPVYDVKTKLGVWRVLTVRQSVATNDLMVMVQVNP 581
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BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Match: A0A1X2G7P6_9FUNG (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G7P6_9FUNG)

HSP 1 Score: 92.8 bits (229), Expect = 1.980e-16
Identity = 87/326 (26.69%), Postives = 142/326 (43.56%), Query Frame = 3 
Query:  237 EPAPEEDLTKVTVFNVGLHATLVQFEKILKANAIKYKKAKKTPATTHGVLTFETAEQRAVAMDKL------GKL---KGARGGELMYAVLSKQKQRGDKRGAAGGENGKGNDSKRQRQDQEPRTVAQATA----SLYGVKTYPEQLAFKEETLMNDLFLKLPAVVRNEWDKRFREWKRNQGMKKGAVAGSNANKPAELRCPSWCKMFKRRDGNVPFDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVESPKDCPQVHRDMKKLCAQMDTFMRSSAFPLYDDAAKKGVWRFLVVRRSVADNETMIMIVINP 1175
            +P   + L +V V N+ + + + + ++ LK     ++   K P   + + TFE+  +   AMD L      GKL   K     E  Y     +K++ +K+     E+             + RT A+  A     L+ V  Y +QL  K++ LM  ++         E  K+  E K      KG V  S                    +   PF  + +V SPE +GYR KCEFT+    DG  T GF  G ++ G+ + V  P +   V    KK+ A M  ++R+S +P+YD   KKGVWR  ++ ++    + +++I I P
Sbjct:   24 QPQESKLLHQVRVDNLPM-SDIKEIKQFLKDKG--FQSISKAPKWRYAMCTFESEAEAQQAMDNLKDVQYKGKLLTTKSFTQSEESYRDRFNKKKKNNKKNEPAPED-------------DTRTPAERLAFQVTPLFNVP-YEDQLKQKKKILMKTMY---------ELKKKIGEMKDQSERSKGQVDWST-------------------EPGFPFGEMEVVASPEVDGYRTKCEFTVGKDLDGQITVGFLLGLFRHGI-VNVLDPSETKNVPEIAKKIAANMQEYIRASEYPIYDREEKKGVWR-TIMTKTQRTGDVLLLIQIKP 302
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BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Match: A0A507DBG4_9FUNG (RRM domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DBG4_9FUNG)

HSP 1 Score: 92.4 bits (228), Expect = 3.080e-16
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  801 SWCKMFKRRDGNVPFDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVESPKDCPQVHRDMKKLCAQMDTFMRSSAFPLYDDAAKKGVWRFLVVRRSVADNETMIMIVIN 1172
            SW +  +   G +P  +LPIVPSP  +GYRNKCEF++ L+ DG  T GF  G ++ GV + V        V    KK+ + M  F++ S F +YD  AKKG WR ++VR +    + M+++  N
Sbjct:  233 SWIRQ-EDGSGGLPCSLLPIVPSPVIDGYRNKCEFSMGLSPDGEETVGFLLGLFKDGV-VQVMGADHLKHVSDTAKKVASGMQKFIQESEFVVYDREAKKGFWRLMLVR-TPRSGDVMVLVQYN 353
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BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Match: A0A1X2IYN9_9FUNG (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IYN9_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 3.580e-16
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 3 
Query:  837 VPFDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVESPKDCPQVHRDMKKLCAQMDTFMRSSAFPLYDDAAKKGVWRFLVVRRSVADNETMIMIVI 1169
             P++VL I+PSPE EGYR KCEFT+    DG  T GF  G ++ G+ ++V  P +   +    KK+   M+ ++R+S +P+YD  AK+GVWR  ++ ++    + MI+I I
Sbjct:  208 TPWEVLDIIPSPEVEGYRTKCEFTIGKNLDGEPTVGFLLGLFRMGI-VSVLEPSELKNIPDIAKKIAKSMEDYVRASEYPVYDREAKEGVWR-TIMTKTQRTGDVMIVIQI 316
[Close]
BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Match: A0A168R7D4_ABSGL (RRM domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168R7D4_ABSGL)

HSP 1 Score: 91.7 bits (226), Expect = 4.590e-16
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  786 ELRCPSWCKMFKRRDGNVPFDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVESPKDCPQVHRDMKKLCAQMDTFMRSSAFPLYDDAAKKGVWRFLVVRRSVADNETMIMIVI 1169
            +L  P   ++   +   +P +VL I+ SPE+EGYR KCEFT+    DG AT GF  G ++ G+ + V  P D   +    KK+   M  ++R+S +P+YD  AK+GVWR L+ +     +   IMIV+
Sbjct:  192 QLSGPERHQINWAKQPGLPCEVLEIIASPEEEGYRTKCEFTIGKNFDGEATVGFLLGLFRLGI-VAVLEPSDLKNIPISAKKIAKAMQDYVRASDYPVYDREAKEGVWRTLMTKTQRTGD---IMIVV 315
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BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Match: A0A433DH53_9FUNG (RRM domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DH53_9FUNG)

HSP 1 Score: 91.3 bits (225), Expect = 4.630e-16
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 3 
Query:  834 NVPFDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVESPKDCPQVHRDMKKLCAQMDTFMRSSAFPLYDDAAKKGVWRFLVVRRSVADNETMIMIVINP 1175
            ++PF  L  +PSP  EGYR KCEFT+    DG  T GF  G Y+ GV   +E P++C  V    KK+   M  ++RSS    YD   K+G WR L+VR      E MI++  +P
Sbjct:  172 SLPFKTLDTIPSPNTEGYRTKCEFTIGFDLDGNRTVGFLLGLYKDGVTAVLE-PQECVHVGDAAKKVATAMQNYVRSSDLEPYDRTTKQGYWRSLLVRTQRC-GEIMIIVQFHP 283
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BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Match: A0A8C4PW77_EPTBU (tRNA (uracil(54)-C(5))-methyltransferase n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4PW77_EPTBU)

HSP 1 Score: 90.5 bits (223), Expect = 1.560e-15
Identity = 50/142 (35.21%), Postives = 70/142 (49.30%), Query Frame = 3 
Query:  804 WCKMFKRRDGNVPFDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVESPKDCPQVHRDMKKLCAQMDTFMRSSAFPLYDDAAKKGVWRFLVVRRSVADNETMIMIVINPT*VSGGVLLDSRWTPSCF 1229
            W    KR+ G +P   L + PSPE +GYRNKCEF + L E G    GFR G Y+ G   T+        V   MK+  A +  F RSS  P+YD     G WR  V  R+    + M+++ ++P  +S   L ++     CF
Sbjct:  261 WLATQKRQHGGLPCPFLGVKPSPELDGYRNKCEFNVGLGEKGEVEVGFRLGAYRHG-SCTIGPVASSRHVSDVMKQAVAVLKEFFRSSRLPVYDPRTYSGYWR-QVTLRTTKTGQMMVLVCLHPQALSKEELKNAGAELCCF 400
[Close]
BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Match: A0A0K9QW58_SPIOL (C3H1-type domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QW58_SPIOL)

HSP 1 Score: 90.1 bits (222), Expect = 2.050e-15
Identity = 86/303 (28.38%), Postives = 130/303 (42.90%), Query Frame = 3 
Query:  306 QFEKILKANAIKYKKAKKTPATTHGVLTFETAEQRAVAMDKLG-------KLKGARGGELMYAVLSKQKQRGDKR---GAAG-GENGKGNDSKRQRQDQEPRTVAQATASLYGVKTYPEQLAFKE--ETLMNDLFLKLPAVVRNEWDKRFREWKRNQGMKKGAVAGSNANKPAELRCPSWCKMFKRRDGNVPFDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVESPKDCPQVHRDMKKLCAQMDTFMRSSAFPLYDDAAKKGVWRFLVVRRSVADNETMIMIVINP 1175
            Q +  L    + +K AKK    + G LTFE AEQ   A + LG       KLK    G+++     ++ +  +KR   G AG  +  + N +  + ++ E    A    S+    T    L + E  E   N L   L  + RN               +K          P +L  P W  +  R  G +P  +  I+ SP+  GYRNKCEF++ L+  G  T GF  G +++GV   VE P +CP V R      +    F+R SA P+++     G WR L VR      + + + V +P
Sbjct:  182 QLKTYLDEQGVVFKSAKKKKGMSVGFLTFEAAEQVNSATELLGGKSIGKEKLKI---GDVIPRAYDEKIKSAEKRYQNGIAGVADETEANSASNEIENGEVNGSASRGKSVRDAVTPLAHLPYAEQLEQKKNSLTQILKRLTRN--------------ARKAC--------PKDLPLPKWV-VNSREIGGLPCKLEGIIESPQINGYRNKCEFSVGLSVQGKPTVGFMLGNFREGV-TAVEEPTNCPNVSRIACNYASVFQEFLRDSALPIWNRFNNTGFWRQLTVREGQNPQKDVELQVQDP 457
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig143.3370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK1_ECTSI3.570e-16577.02Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A6H5J9G9_9PHAE4.270e-13273.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A662XY21_9STRA2.110e-1839.69Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1X2G7P6_9FUNG1.980e-1626.69S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A507DBG4_9FUNG3.080e-1638.71RRM domain-containing protein n=1 Tax=Synchytrium ... [more]
A0A1X2IYN9_9FUNG3.580e-1639.64S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A168R7D4_ABSGL4.590e-1637.50RRM domain-containing protein n=1 Tax=Absidia glau... [more]
A0A433DH53_9FUNG4.630e-1641.23RRM domain-containing protein n=1 Tax=Jimgerdemann... [more]
A0A8C4PW77_EPTBU1.560e-1535.21tRNA (uracil(54)-C(5))-methyltransferase n=1 Tax=E... [more]
A0A0K9QW58_SPIOL2.050e-1528.38C3H1-type domain-containing protein n=1 Tax=Spinac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig143contigH-canaliculatus_F_contig143:55593..61246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score494.2
Seed ortholog evalue5.2e-137
Seed eggNOG ortholog2880.D7FLK1
Preferred nameTRMT2A
KEGG koko:K15331,ko:K15332
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
EggNOG free text desc.S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
EggNOG OGsCOG2265@1,KOG2187@2759
EC2.1.1.35
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMethyltransferase domain
Ec32 orthologEc-17_000890.1
Exons8
Model size1413
Cds size1089
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig143.3370.1prot_H-canaliculatus_F_contig143.3370.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig143 55685..61014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929178.9212506-UTR-H-canaliculatus_F_contig143:55592..556841622929178.9212506-UTR-H-canaliculatus_F_contig143:55592..55684Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig143 55593..55684 +
1696845708.5165-UTR-H-canaliculatus_F_contig143:55592..556841696845708.5165-UTR-H-canaliculatus_F_contig143:55592..55684Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig143 55593..55684 +
1622929179.040419-UTR-H-canaliculatus_F_contig143:61014..612461622929179.040419-UTR-H-canaliculatus_F_contig143:61014..61246Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig143 61015..61246 +
1696845708.631847-UTR-H-canaliculatus_F_contig143:61014..612461696845708.631847-UTR-H-canaliculatus_F_contig143:61014..61246Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig143 61015..61246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929178.9354293-CDS-H-canaliculatus_F_contig143:55684..558581622929178.9354293-CDS-H-canaliculatus_F_contig143:55684..55858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 55685..55858 +
1696845708.529964-CDS-H-canaliculatus_F_contig143:55684..558581696845708.529964-CDS-H-canaliculatus_F_contig143:55684..55858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 55685..55858 +
1622929178.9522285-CDS-H-canaliculatus_F_contig143:57107..572361622929178.9522285-CDS-H-canaliculatus_F_contig143:57107..57236Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 57108..57236 +
1696845708.5397792-CDS-H-canaliculatus_F_contig143:57107..572361696845708.5397792-CDS-H-canaliculatus_F_contig143:57107..57236Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 57108..57236 +
1622929178.9664452-CDS-H-canaliculatus_F_contig143:57676..578441622929178.9664452-CDS-H-canaliculatus_F_contig143:57676..57844Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 57677..57844 +
1696845708.5559897-CDS-H-canaliculatus_F_contig143:57676..578441696845708.5559897-CDS-H-canaliculatus_F_contig143:57676..57844Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 57677..57844 +
1622929178.9780962-CDS-H-canaliculatus_F_contig143:58053..581841622929178.9780962-CDS-H-canaliculatus_F_contig143:58053..58184Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 58054..58184 +
1696845708.5675664-CDS-H-canaliculatus_F_contig143:58053..581841696845708.5675664-CDS-H-canaliculatus_F_contig143:58053..58184Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 58054..58184 +
1622929178.990347-CDS-H-canaliculatus_F_contig143:58760..589471622929178.990347-CDS-H-canaliculatus_F_contig143:58760..58947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 58761..58947 +
1696845708.5783188-CDS-H-canaliculatus_F_contig143:58760..589471696845708.5783188-CDS-H-canaliculatus_F_contig143:58760..58947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 58761..58947 +
1622929179.0016017-CDS-H-canaliculatus_F_contig143:59352..594811622929179.0016017-CDS-H-canaliculatus_F_contig143:59352..59481Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 59353..59481 +
1696845708.588982-CDS-H-canaliculatus_F_contig143:59352..594811696845708.588982-CDS-H-canaliculatus_F_contig143:59352..59481Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 59353..59481 +
1622929179.0122714-CDS-H-canaliculatus_F_contig143:60148..602261622929179.0122714-CDS-H-canaliculatus_F_contig143:60148..60226Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 60149..60226 +
1696845708.6054468-CDS-H-canaliculatus_F_contig143:60148..602261696845708.6054468-CDS-H-canaliculatus_F_contig143:60148..60226Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 60149..60226 +
1622929179.0254416-CDS-H-canaliculatus_F_contig143:60921..610141622929179.0254416-CDS-H-canaliculatus_F_contig143:60921..61014Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 60922..61014 +
1696845708.6210644-CDS-H-canaliculatus_F_contig143:60921..610141696845708.6210644-CDS-H-canaliculatus_F_contig143:60921..61014Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig143 60922..61014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig143.3370.1

>prot_H-canaliculatus_F_contig143.3370.1 ID=prot_H-canaliculatus_F_contig143.3370.1|Name=mRNA_H-canaliculatus_F_contig143.3370.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=363bp
MVSPEGVAVEEKGDRVLEQRIPESDAAATSCTAVIAAASAAAGSPTTGEP
APEEDLTKVTVFNVGLHATLVQFEKILKANAIKYKKAKKTPATTHGVLTF
ETAEQRAVAMDKLGKLKGARGGELMYAVLSKQKQRGDKRGAAGGENGKGN
DSKRQRQDQEPRTVAQATASLYGVKTYPEQLAFKEETLMNDLFLKLPAVV
RNEWDKRFREWKRNQGMKKGAVAGSNANKPAELRCPSWCKMFKRRDGNVP
FDVLPIVPSPEQEGYRNKCEFTLSLAEDGLATTGFRSGRYQQGVPITVES
PKDCPQVHRDMKKLCAQMDTFMRSSAFPLYDDAAKKGVWRFLVVRRSVAD
NETMIMIVINPT*
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mRNA from alignment at H-canaliculatus_F_contig143:55593..61246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig143.3370.1 ID=mRNA_H-canaliculatus_F_contig143.3370.1|Name=mRNA_H-canaliculatus_F_contig143.3370.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig143:55593..61246+ (Hapterophycus canaliculatus Oshoro5f female)
GGTAAAGACAGTTGCAGACTTGGTGAGGCTTGACGTGTTCGACCAGCGAC
CAGGTAACAGCCACGTCGAGTCCTTCTGAATTCGCTGGCGCAATGGTGAG
CCCCGAAGGAGTGGCGGTTGAGGAAAAAGGCGACAGAGTTCTCGAGCAGC
GCATTCCTGAGAGCGACGCTGCTGCAACCAGCTGTACTGCTGTCATCGCG
GCAGCCTCGGCTGCGGCCGGTTCGCCCACAACGGGGGAGCCAGCACCTGA
AGAAGACCTGACAAAGGCGAGACGCGATACTTGCTCGCCATGATTGGGGC
CCGTCTCTTGTTGGGCAAAACGACGCTTGTATATTGTGTGCAGTAGATCG
ATTTGAACTCCAACCGTTTGGTCTGGTGAGGGCTGATACTGTAGAATTGG
GAGAGCGATCATCAAAGACATCTACAGTAGTAGTATCGCCATCCGCTTAC
ATCACGCAAGGCACAAGAGGAAGTACGGCTTGCGTTCGTGTTGTCGGCCT
TCCGTGCAAGAAGTTGTCTGCCCCTTCGTATCGCTGCGGGTAAAAGTAGC
CGGCATCTGAAGCACCGCTTCGGCTGTAACAGAAAACCGCAGGTGAGGGC
GTGGGTGTGGCATGTTCAACACCTTGCAGGGATCACAAAGATTTGGTCGT
GGCCCTTGCAACCAAGGACTCTTGCCGTCTTGCAGGATTCTTGTCGGCCT
GTTGACTGTTCTATGTTAAGCCTGCCGTAACGTTCTTTACTACTCTCTGC
CCACTGCGTTTGAACTTGACTTGCTGAAGCGCTATCCAGAAACATGAAAT
GATCAAGAAACATGACATGTTTACACCGTCACTGTGTTCATGGGGACAGT
AGCCTTGCGCCCCGAAAGGGACGAGTGATCCGTGGAAGGACAGCCTGAAG
GGGCAGGGGGGGTGTGCACGCTCAAAAGTGAGCGCGGAATTTGGTCCGTA
ACGTCTCTATCTGTATGATAGCCACAAGACGTTCTGGCACAAATGTCGGA
AGATTTCAACTCTTGCGTCTATGCCTTCCGTTTCTCCGTATCTCCGCCCT
CAGCTCCGAAGATACCGACATCATAATGAGGCTTTCCAAGGAAAACTGGA
TGTGGCCGCTACTGCATAGCTTCTGGTTGTTGTTGTGTCCCACGCTTCGT
GTGTACCAATGATGACTGCTGTAGACTCCGTTAAGGCGTGTGAATGTTCC
TGATCGAAGAGAGCAGCGATGATAGCAGGCCAGGCTCGTTCACCCAATCC
ATGACGCACAGCAGCAATTTCTCATAACATGAGCCCGCGTGCCATTTTAC
ATCCCACGCACCCTTCCCGCTCCCGACGCCCCCAACACGAGCTAGTTCGC
GCATGTCCCGTCAGCAGCACGAAGGCGCAGAAGAAACCCTACCGCGGGGG
TGCTCGTTCTCCGCGACGCAAGCGGGTGCGTGACGCCGGGTGGCCTTTCC
GCCTTTCGTGACCCTCTCGCCTGTGTGCCATACGTCTTTGACGATGCGCA
TTCGCGCACCCGCAGGTGACGGTGTTCAACGTCGGCCTGCACGCGACCCT
CGTCCAGTTCGAGAAGATTCTCAAGGCCAACGCCATCAAATACAAGAAGG
CGAAGAAGACTCCGGCTACGACTCATGGCGTGCTCACCTTCGAGGTACTT
AAAATGTCGTCGCACGTGTGAACCTCTGGTTGCGGATGGTTTGCGACCGC
GAACTGGTTCTGGGACTTGCTGTCTGCTCCAGTACACCAAAACTCATCTG
GCACGTCGTGGTCGACAGGAACTCGTTCATGACCACACGCGCTTGAACAG
CATGAGTACATACGTGAACAGCTTTCCCAGAACAGATTGACGGCCCCTGC
GTTCCGGTGTGGTTTCCGGCGCTATCATAGTGGTGATATTTGCAGGAACA
CCATCTGACCACGCCCTGGAGCGCCCAAAAATTGATGGTGGGACCTCTTA
AAGGAGCCGGAACGACAGATGATTCGCTTCGTCTCGTCGAAAGGGATGCG
TTGACCAATGATTGAACGGATGAAGAGAGGCTTCGAGCGAGTGCACCCTC
CCACCTCCTTCCCTCTTCCATGACGAGAAAAAAGACGGCCGAGCAACGCG
CCGTGGCCATGGACAAGCTGGGCAAGCTCAAAGGGGCCCGGGGCGGGGAG
CTCATGTACGCGGTGTTGTCGAAGCAGAAGCAGCGCGGCGATAAGCGCGG
AGCAGCAGGCGGAGAGAACGGGAAAGGCAACGATTCGAAGCGACAGCGAC
AGGTGCGAGGGTTGCCTTACTGCTGATATTCTCGCTGTCGCGGTTGCTCT
TGTTGCTGCCATGTCGTCGTTTGGCCTCTCCCTGAAATGGGTCCTTCTCC
ACCCGCCCGGTCCCCCTCTTCCGCCTCGAGGGTCACGTGTTATGATCGTA
CCGACATCGTGGCGCGACGGTGCACGTAAATGTATAATCCGTACAATTTA
TCGCTTGCTAGGACCAGGAGCCGAGGACGGTGGCGCAAGCGACGGCATCG
CTGTACGGGGTTAAGACCTACCCGGAGCAGCTGGCTTTCAAGGAGGAGAC
TCTCATGAATGATCTCTTCTTGAAGCTGCCCGCCGTCGTCAGGTGCGCTT
GGTAGAAGAGTGCAGAGCTCCGGTTCTTGTCAGTTTTGTGGGCATTGGAG
ATTTGGTCGAAACCTTTTCCCTATCGAAGGGTCCCCCGGGATAAGACTAC
GATGATTTATCTGATGTTGGTGACGCCCACCCCTCGTGAAGTTGAGGCTT
GAGGGTGGGCTCCATTGTTTGAGATAGTGACCACTGCTGTCATAGGGTTT
GGAGCCGTCCACCCTTTCTCCATCCACGCACCCCTGGATCACTACAAACG
CTTCACTTGTACTTTAGCCATGTTATTTGTAGGATACGATGATACCACCA
TTGCACACCGTTCTCTCGGTGACTGTCTGATCATCGCAGGCTCTGCACGC
ATTTTCATCGCAAATACTACAGCCGAAAGTGAGTATCTTCGCTTGAACTG
TGTCCGCGCGATCCTGATCCTTGATCCTTGACTTTGACCAACATGATGAT
CACCAACACCACCATCCCGTCAACATCGATGACGACAACACTACCACCGT
CGCCACGGTACTAGCAGTGGCGGCAACAAGAAACCAGTAATCTCGATCAT
CGACACATTTCCCCGTAGGAACGAGTGGGACAAACGGTTCCGAGAGTGGA
AGCGGAACCAGGGGATGAAGAAGGGAGCGGTGGCCGGGTCCAACGCCAAC
AAGCCTGCGGAACTCCGCTGCCCCTCCTGGTGCAAGATGTTCAAGCGCCG
TGATGGAAACGTGCCCTTCGATGTCTTGCCCATAGTGCCCTCGCCGGAGC
AGGAGGTATGCGCGAGCGCGCGTGTGTGGGTTTGTCTGTGTTTGCACAAT
GTGCGTGTGTGTATGTGAGAGAGAGAGAGAGAGTTTGCGCAAGGCATGCG
TCTTGTGTTTCGTTTTCCATCTTTCGTTTCTTTTTGGAAGGCGGTGCGTG
CCTCTGGCGCCGGTTGCCACCCTGTCCATCTGCTTTTCAGCGCCTCCTCC
TCCTTCTTTTTTCGTGGGATGGGTTGTTTTCTTGCTGTGTCTTTGGGGTA
GAGCTCAAGCCGAGTCGACATCTTCTTTGGTTCAGACCGACGAGCCATTT
ATTTCTCCGTTTTTCCCCGTCTCCCATCACGCTTCACACCACACCACACC
GTGTGCCACACCACGTGTCGTCACTGGGCTGCGCTTGGTGCTGCTCGTGC
CGACCAACAGGGGTATCGCAACAAGTGCGAGTTCACCCTCAGCCTCGCGG
AGGACGGGCTGGCCACAACCGGTTTCCGGTCGGGCAGGTACCAACAGGGG
GTGCCCATCACGGTGGAGTCCCCGAAAGACTGTCCTCAGGTGGGTGCGGC
TCCGCTGGACTGGGGCGCCAACCGATTGTGCGTGCTCTTGCTGCTGCTGT
TGTCAGCGTTGCTCGTTTGTCTCGACGGTAAAGAGTTAAAGGAGGTTACG
ATCGATCTGCCCTCTCGGCGCCTCTTGTATTGGTCCGCAATGTTGATCCG
ACTGAAGCTTCGTGTGCCCACCCGTGTTTTGCGGGGTTGTAGTTTTAGCT
TGTTTTTTTCGTCTCTGGCGCGCTTGCTTCGAAGTCGTCGCGACTGGTTC
ATGAACAGCGGTGTGGTGGTCGGTTCGGCGCGAAGGGTAAACTGCCTGCT
CGAAGGAAAGAGATGGAACCGGTCGTCGCAGCGAGTGGGAAAGGACGAAA
CGACGAACAGCGCGTCGCAAAAAACGTGTGGAAGAGCGTATCAGACCTCG
CTAGGCGCTCTAGTAGCTTGCTGCGGCGAGTGCGAATCGGCTTGGGGCCT
CGGTGCCGTGCCGGGCGTCCCAACCACAGGGTTCCGATTTAATCGCCCCC
CTCTCGGTCGTCCACCATCCGATTACGATATCGCTGGGCACGTCAGCCTC
CCCCCTCCACCTTGTTCGCGTTAGAAAGTCCTCTCTTCCTCCTTCTCTCT
CCGTCTCTTGTACGTGATTTCTTCGTTCCCTCCACCCTTCTTTTTTCGCG
AGCTAGGTCCACCGTGACATGAAGAAGCTGTGCGCGCAGATGGACACGTT
CATGCGGAGCTCAGCGTTCCCCCTCTACGACGATGTGAGCGAGCTTGGAA
GGTAGCGGACGCCCTACGTCGAGGCACGAGGGCAGTCTGCCCCCCTATCT
CACGTTCTTGTATCGGGTGTTGTTTTTTTCCTCTCCGTTTTGTTCGTGAC
TGGGTTTTGGCTCCGCGGGGGGTTGCGGGTGAGTGTCCTGCTACCGTATG
ACAAGCAAAACCAGTAGAACGCACGTGAGACACATGGCGCAATGGAACCT
GCCCCGTGCCCATGTTCACGCGTGTAGCAGGCGTGCTGGCATTCTTGTTT
AGTGTGCTGTCGAATGGGGGTTGGTTACGGTGGCGATGGCGGTAACGGTG
GCGGTGTTGCCTTGTCGCGGAGACGAGTGGGTGCTAGACGCCTCCCTTGC
TCAAGAGAAAGAAACGCGCACCGTATTCTCGTATCAACCGCGCGTATTCG
GGAACCTGTGTGGTAGCGGTAGGATAGCTGCTTTGGCGGGGGCGAGGGGG
GTCACGACTGAGAGTGCGTGGCGTGCAACGGGAAGAGGACCTCTGCTCCC
CTCTTGCACGAGGGTAAGGGTAGGATTGGTGCCGTGAACCTAGATACATG
TTGGCTGTCCGGTAACGCTTTCGCCGTGTTTGGGCGCTCCGTGTTTCAAA
AATTGTTGTTGGCGCTCTTGCGCTCTTGGTGGACTGCCTGATTCTGGTAT
TGTCGGCGCTGTCGCTGTCCTTGTTTCAGGCGGCCAAGAAGGGCGTGTGG
CGGTTCCTCGTGGTGAGACGCTCGGTCGCCGACAACGAAACCATGATCAT
GATCGTCATAAACCCCACGTGAGTCTCTGGCGGCGTGCTTTTGGACTCTC
GATGGACCCCTTCGTGTTTTCATATGCCCGAAACAAGGAAAAAAGACGCC
TCATAAAGGACGATCTTGGTCAACCCGCGCCCGACGACGTGGTCGTACAG
CGTGCGCGTCCTCTCCCCGTGCCCGACGAGCACAAGCTGCGGCTGCCGAA
CCTCGGGCGTCGCTGTCGGAACGACCCGTCTCTGAAGGAGAAGATAAGTC
GCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig143:55593..61246+

>mRNA_H-canaliculatus_F_contig143.3370.1 ID=mRNA_H-canaliculatus_F_contig143.3370.1|Name=mRNA_H-canaliculatus_F_contig143.3370.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2178bp|location=Sequence derived from alignment at H-canaliculatus_F_contig143:55593..61246+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGAGCCCCGAAGGAGTGGCGGTTGAGGAAAAAGGCGACAGAGTTCT
CGAGCAGCGCATTCCTGAGAGCGACGCTGCTGCAACCAGCTGTACTGCTG
TCATCGCGGCAGCCTCGGCTGCGGCCGGTTCGCCCACAACGGGGGAGCCA
GCACCTGAAGAAGACCTGACAAAGATGGTGAGCCCCGAAGGAGTGGCGGT
TGAGGAAAAAGGCGACAGAGTTCTCGAGCAGCGCATTCCTGAGAGCGACG
CTGCTGCAACCAGCTGTACTGCTGTCATCGCGGCAGCCTCGGCTGCGGCC
GGTTCGCCCACAACGGGGGAGCCAGCACCTGAAGAAGACCTGACAAAGGT
GACGGTGTTCAACGTCGGCCTGCACGCGACCCTCGTCCAGTTCGAGAAGA
TTCTCAAGGCCAACGCCATCAAATACAAGAAGGCGAAGAAGACTCCGGCT
ACGACTCATGGCGTGCTCACCTTCGAGGTGACGGTGTTCAACGTCGGCCT
GCACGCGACCCTCGTCCAGTTCGAGAAGATTCTCAAGGCCAACGCCATCA
AATACAAGAAGGCGAAGAAGACTCCGGCTACGACTCATGGCGTGCTCACC
TTCGAGACGGCCGAGCAACGCGCCGTGGCCATGGACAAGCTGGGCAAGCT
CAAAGGGGCCCGGGGCGGGGAGCTCATGTACGCGGTGTTGTCGAAGCAGA
AGCAGCGCGGCGATAAGCGCGGAGCAGCAGGCGGAGAGAACGGGAAAGGC
AACGATTCGAAGCGACAGCGACAGACGGCCGAGCAACGCGCCGTGGCCAT
GGACAAGCTGGGCAAGCTCAAAGGGGCCCGGGGCGGGGAGCTCATGTACG
CGGTGTTGTCGAAGCAGAAGCAGCGCGGCGATAAGCGCGGAGCAGCAGGC
GGAGAGAACGGGAAAGGCAACGATTCGAAGCGACAGCGACAGGACCAGGA
GCCGAGGACGGTGGCGCAAGCGACGGCATCGCTGTACGGGGTTAAGACCT
ACCCGGAGCAGCTGGCTTTCAAGGAGGAGACTCTCATGAATGATCTCTTC
TTGAAGCTGCCCGCCGTCGTCAGGACCAGGAGCCGAGGACGGTGGCGCAA
GCGACGGCATCGCTGTACGGGGTTAAGACCTACCCGGAGCAGCTGGCTTT
CAAGGAGGAGACTCTCATGAATGATCTCTTCTTGAAGCTGCCCGCCGTCG
TCAGGAACGAGTGGGACAAACGGTTCCGAGAGTGGAAGCGGAACCAGGGG
ATGAAGAAGGGAGCGGTGGCCGGGTCCAACGCCAACAAGCCTGCGGAACT
CCGCTGCCCCTCCTGGTGCAAGATGTTCAAGCGCCGTGATGGAAACGTGC
CCTTCGATGTCTTGCCCATAGTGCCCTCGCCGGAGCAGGAGGAACGAGTG
GGACAAACGGTTCCGAGAGTGGAAGCGGAACCAGGGGATGAAGAAGGGAG
CGGTGGCCGGGTCCAACGCCAACAAGCCTGCGGAACTCCGCTGCCCCTCC
TGGTGCAAGATGTTCAAGCGCCGTGATGGAAACGTGCCCTTCGATGTCTT
GCCCATAGTGCCCTCGCCGGAGCAGGAGGGGTATCGCAACAAGTGCGAGT
TCACCCTCAGCCTCGCGGAGGACGGGCTGGCCACAACCGGTTTCCGGTCG
GGCAGGTACCAACAGGGGGTGCCCATCACGGTGGAGTCCCCGAAAGACTG
TCCTCAGGGGTATCGCAACAAGTGCGAGTTCACCCTCAGCCTCGCGGAGG
ACGGGCTGGCCACAACCGGTTTCCGGTCGGGCAGGTACCAACAGGGGGTG
CCCATCACGGTGGAGTCCCCGAAAGACTGTCCTCAGGTCCACCGTGACAT
GAAGAAGCTGTGCGCGCAGATGGACACGTTCATGCGGAGCTCAGCGTTCC
CCCTCTACGACGATGTCCACCGTGACATGAAGAAGCTGTGCGCGCAGATG
GACACGTTCATGCGGAGCTCAGCGTTCCCCCTCTACGACGATGCGGCCAA
GAAGGGCGTGTGGCGGTTCCTCGTGGTGAGACGCTCGGTCGCCGACAACG
AAACCATGATCATGATCGTCATAAACCCCACGTGAGCGGCCAAGAAGGGC
GTGTGGCGGTTCCTCGTGGTGAGACGCTCGGTCGCCGACAACGAAACCAT
GATCATGATCGTCATAAACCCCACGTGA
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