mRNA_H-canaliculatus_F_contig14275.3360.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14275.3360.1
Unique NamemRNA_H-canaliculatus_F_contig14275.3360.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Match: D8LMU3_ECTSI (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU3_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 2.240e-87
Identity = 143/160 (89.38%), Postives = 152/160 (95.00%), Query Frame = 1
Query:  130 RGARALTTPKRSRS-KSAIDLARSGWYNKIVLAIVRPPRCKYTLGDLGNELTPVSSGLAMRRRDFEVRNQRGLKLVCSQWRPAFIEDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSNG 606
            R A A   P R++S +SAIDLARSGWYNKIV+AIVRPPRCKY++GDLGNE+TP+SSGLAM+RRDFEVRNQRGLKLVCSQWRPAF EDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSNG
Sbjct:  211 RWAEARRLPGRAKSSRSAIDLARSGWYNKIVMAIVRPPRCKYSIGDLGNEVTPLSSGLAMKRRDFEVRNQRGLKLVCSQWRPAFTEDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSNG 370          
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Match: A0A6H5JRH5_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH5_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 3.920e-87
Identity = 142/160 (88.75%), Postives = 153/160 (95.62%), Query Frame = 1
Query:  130 RGARALTTPKRSRS-KSAIDLARSGWYNKIVLAIVRPPRCKYTLGDLGNELTPVSSGLAMRRRDFEVRNQRGLKLVCSQWRPAFIEDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSNG 606
            R A A + P R++S +SAIDLARSGWYNKIV+AIVRPPRCKY++GDLGNE+TP+SSGLAM+RRDFE+RNQRGLKLVCSQWRPAF EDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSNG
Sbjct:  266 RWAEARSLPGRAKSSRSAIDLARSGWYNKIVMAIVRPPRCKYSVGDLGNEVTPLSSGLAMKRRDFEIRNQRGLKLVCSQWRPAFTEDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSNG 425          
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Match: A0A835YYX8_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYX8_9STRA)

HSP 1 Score: 182 bits (463), Expect = 4.230e-50
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 1
Query:  157 KRSRSKSAIDLARSGWYNKIVLAIVRPPRCKYTLGDLGNELTPVSSGLAMRRRDFEVRNQRGLKLVCSQWRPAFIEDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRS 600
            KR++ + AI   R+G YN +V+AIVRPPRC Y   DLG     V  GL + RRDF V N+RG+ L CSQWRP+F++ T  LPCVVYLHGNSSARVDVV+T +L  L +   ++V+FDFSGSG+S GDFVTLG  EQHDVADVLAYLRS
Sbjct:  188 KRAQKQGAIKQLRTG-YNALVMAIVRPPRCCYAERDLGPWALSVGGGLVLHRRDFPVVNRRGVALACSQWRPSFVDATGALPCVVYLHGNSSARVDVVRTRALTALASMGASIVAFDFSGSGLSGGDFVTLGGNEQHDVADVLAYLRS 334          
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Match: A0A836CG95_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG95_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.720e-30
Identity = 64/132 (48.48%), Postives = 91/132 (68.94%), Query Frame = 1
Query:  211 KIVLAIVRPPRCKYTLGDLGNELTPVSSGLAMRRRDFEVRNQRGLKLVCSQWRPAFIEDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSNG 606
            ++V AI+RPPR +Y++G LG      + G A RR DFE+ N RG+ L CS W P       +LPCVVYLHGNSSAR + +   +L VL   A T+++FD SGSGMS+G++V+LGY+E+ D+  V+ +LR++G
Sbjct:    2 ELVNAIIRPPRARYSIGSLGPRKFKFN-GRAFRRSDFELTNPRGMALKCSHWEPDGWRVAEQLPCVVYLHGNSSARPEALPQLAL-VLSLGA-TLLAFDCSGSGMSDGEYVSLGYWERDDLGAVINHLRASG 130          
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Match: D3B5X8_POLPP (Alpha/beta hydrolase fold-1 domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B5X8_POLPP)

HSP 1 Score: 123 bits (309), Expect = 1.460e-29
Identity = 62/146 (42.47%), Postives = 96/146 (65.75%), Query Frame = 1
Query:  172 KSAIDLARSGWYNKIVLAIVRPPRCKYTLGDLGNELTPVSSGLAMRRRDFEVRNQRGLKLVCSQWRPA-FIEDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSNG 606
            KS   L  S  Y+ +   ++RPPRC+YTL D+G +   ++ GL+  R DFE+ N RGL + CS ++PA +  +  +LPCV+Y HGNS  R+D ++   +R L     TVV+FDF+GSG+S G++V+LGY+E+ D+  ++ +LR  G
Sbjct:    4 KSPSTLNLSAHYDSLCNMVIRPPRCQYTLEDMGPKAFSIA-GLSFVRNDFELVNGRGLPIQCSHFKPAEYWSNGKQLPCVIYCHGNSGCRLDALEC--VRTLLPINITVVAFDFAGSGLSGGEYVSLGYYEKEDIGTIVKHLRETG 146          
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Match: A0A8J1ZH11_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZH11_9DINO)

HSP 1 Score: 124 bits (311), Expect = 2.370e-29
Identity = 65/134 (48.51%), Postives = 90/134 (67.16%), Query Frame = 1
Query:  205 YNKIVLAIVRPPRCKYTLGDLGNELTPVSSGLAMRRRDFEVRNQRGLKLVCSQWRPAFIEDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSNG 606
            YN  V AI+RPPR  YTL DLG +       +   R+D E+ N RG +L CS + PA I+  SK PCV+YLHGNSS+RV+ +  ++L V+    CT+  FDFSGSG+S+GD+V+LG++E+ D+  V  YLR+ G
Sbjct:    9 YNGAVDAIIRPPRDTYTLDDLGPKRFRTGQRV-WHRKDLELVNARGHRLQCSHFLPAQIDPDSKWPCVIYLHGNSSSRVEAM--TALEVVLPLPCTLFCFDFSGSGLSDGDYVSLGFYEKDDLQTVTQYLRTTG 139          
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Match: A0A7S2SU53_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU53_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.320e-29
Identity = 68/151 (45.03%), Postives = 99/151 (65.56%), Query Frame = 1
Query:  154 PKRSRSKSAIDLARSGWYNKIVLAIVRPPRCKYTLGDLG-NELTPVSSGLAMRRRDFEVRNQRGLKLVCSQWRPAFIEDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSN 603
            P R RS S  ++A+ G Y ++V AI+RPPR +Y    LG  E T    G    R DFE+ N+RG+K+ CS W P   +  + LPCV+Y+HGN+SAR + +  S L +  +   T+V+FDF GSG+SEGD+V+LGYFE+ D+  V+ +LR++
Sbjct:   43 PPRGRSMSYWEMAKVG-YQELVNAIIRPPRAEYLPEQLGPTEFT--FGGHQFTRTDFELTNERGMKIQCSHWEPVERKAVT-LPCVIYMHGNASARPEAL--SQLALCLSLGATMVAFDFCGSGLSEGDWVSLGYFEREDLKVVVEHLRAS 187          
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Match: A0A7S2SL50_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SL50_9STRA)

HSP 1 Score: 122 bits (306), Expect = 7.120e-29
Identity = 61/135 (45.19%), Postives = 93/135 (68.89%), Query Frame = 1
Query:  199 GWYNKIVLAIVRPPRCKYTLGDLGNELTPVSSGLAMRRRDFEVRNQRGLKLVCSQWRPAFIEDTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSN 603
            G YN +V AI+RPPR +Y +G LG E+  V  G    R+D E+ N+RGLKL CS W+P   + T   PC+VYLHGN+S R + ++   L ++ ++  T+ + DF+GSGMSEG++++LG+FE+ DV  V+ +LR++
Sbjct:   56 GGYNDLVNAIIRPPRAEYDMGVLGPEVFTVD-GRVFTRQDIELVNKRGLKLACSHWKPK--DQTGAKPCMVYLHGNASCRAEALEC--LPLILSSGLTLFALDFAGSGMSEGEYISLGWFEREDVQVVVEHLRNS 185          
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Match: A0A812SET8_9DINO (YqkD protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SET8_9DINO)

HSP 1 Score: 118 bits (295), Expect = 1.360e-28
Identity = 63/139 (45.32%), Postives = 90/139 (64.75%), Query Frame = 1
Query:  196 SGWYNKIVLAIVRPPRCKYTLGDLGNELTPVSSGLAMRRRDFEVRNQRGLKLVCSQWRPAFIE--DTSKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSNG 606
            SG Y  IV AI+RPPR  Y   +LG     +  G   +R D ++ N +GL L CS WRP+  E    S LPCVV LHGNSS R++ ++   +R++ T   ++ +FDF+G G+SEGD++TLGY E+ DV+ V++YLR +G
Sbjct:   32 SGTYESIVEAIIRPPRAPYEASNLGPSKF-LLYGHVFKRFDLQITNPQGLTLECSWWRPSNRELISESPLPCVVCLHGNSSCRLEALQ--HVRMVLTRGISLFAFDFAGCGLSEGDYITLGYHEREDVSTVISYLRDSG 167          
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Match: A0A662Y7V5_9STRA (Hydrolase_4 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7V5_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.810e-28
Identity = 66/137 (48.18%), Postives = 87/137 (63.50%), Query Frame = 1
Query:  205 YNKIVLAIVRPPRCKYTLGDLGNELTPVSSGLAMRRRDFEVRNQRGLKLVCSQWRPAFIEDT----SKLPCVVYLHGNSSARVDVVKTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRSN 603
            Y ++V  I+RPPR  Y+L DLG      + G A  R DF VRN R   LVCS WRPA +  T      LPCVVYLHGNSS R++ +    LR   TA  TV +FD SG G S+GD+++LGY+E+ D+ DV+ +LR++
Sbjct:  366 YTELVHLIIRPPRTDYSLEDLGPREFSFA-GRAFVREDFTVRNDRRQTLVCSHWRPAVLAGTPGSQELLPCVVYLHGNSSCRLEALGV--LRTCLTAGLTVAAFDTSGCGKSDGDYISLGYYERDDLRDVMKHLRTH 499          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14275.3360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMU3_ECTSI2.240e-8789.38Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JRH5_9PHAE3.920e-8788.75Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A835YYX8_9STRA4.230e-5062.16Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A836CG95_9STRA5.720e-3048.48Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
D3B5X8_POLPP1.460e-2942.47Alpha/beta hydrolase fold-1 domain-containing prot... [more]
A0A8J1ZH11_9DINO2.370e-2948.51Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S2SU53_9STRA6.320e-2945.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SL50_9STRA7.120e-2945.19Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A812SET8_9DINO1.360e-2845.32YqkD protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A662Y7V5_9STRA2.810e-2848.18Hydrolase_4 domain-containing protein n=2 Tax=Noth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14275contigH-canaliculatus_F_contig14275:140..2708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.3
Seed ortholog evalue1.4e-75
Seed eggNOG ortholog2880.D8LMU3
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGsCOG1073@1,KOG1552@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-02_003660.1
Exons3
Model size606
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14275.3360.1prot_H-canaliculatus_F_contig14275.3360.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14275 140..2708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.2772799-CDS-H-canaliculatus_F_contig14275:139..2771622929176.2772799-CDS-H-canaliculatus_F_contig14275:139..277Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14275 140..277 -
1696845707.196717-CDS-H-canaliculatus_F_contig14275:139..2771696845707.196717-CDS-H-canaliculatus_F_contig14275:139..277Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14275 140..277 -
1622929176.2935948-CDS-H-canaliculatus_F_contig14275:788..9631622929176.2935948-CDS-H-canaliculatus_F_contig14275:788..963Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14275 789..963 -
1696845707.2086535-CDS-H-canaliculatus_F_contig14275:788..9631696845707.2086535-CDS-H-canaliculatus_F_contig14275:788..963Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14275 789..963 -
1622929176.309757-CDS-H-canaliculatus_F_contig14275:2415..27081622929176.309757-CDS-H-canaliculatus_F_contig14275:2415..2708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14275 2416..2708 -
1696845707.217927-CDS-H-canaliculatus_F_contig14275:2415..27081696845707.217927-CDS-H-canaliculatus_F_contig14275:2415..2708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14275 2416..2708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14275.3360.1

>prot_H-canaliculatus_F_contig14275.3360.1 ID=prot_H-canaliculatus_F_contig14275.3360.1|Name=mRNA_H-canaliculatus_F_contig14275.3360.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
GGGGGGGGGGGGGGGGSGGSARGRGGSRTVVVERRRGSAGVGGRGARALT
TPKRSRSKSAIDLARSGWYNKIVLAIVRPPRCKYTLGDLGNELTPVSSGL
AMRRRDFEVRNQRGLKLVCSQWRPAFIEDTSKLPCVVYLHGNSSARVDVV
KTSSLRVLGTAACTVVSFDFSGSGMSEGDFVTLGYFEQHDVADVLAYLRS
NG
back to top

mRNA from alignment at H-canaliculatus_F_contig14275:140..2708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14275.3360.1 ID=mRNA_H-canaliculatus_F_contig14275.3360.1|Name=mRNA_H-canaliculatus_F_contig14275.3360.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2569bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14275:140..2708- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGAG TGGTGGCAGCGCCAGAGGGCGGGGCGGAAGCAGAACAGTAGTCGTGGAAA GACGGCGAGGGAGTGCCGGGGTGGGAGGAAGAGGAGCAAGAGCGCTTACA ACGCCGAAGCGGTCGAGATCGAAGTCTGCAATAGACCTCGCCAGGTCTGG GTGGTACAACAAGATCGTCTTGGCGATCGTCCGGCCGCCGAGGTGCAAGT ACACCCTGGGTGACCTGGGCAACGAGCTGACTCCCGTTAGCAGGTGGGTC AACGCCTTTGGGCATGTTGGACGTGTGCTTGGTAGTGTAAGATAAAGGCG CACATCGATCGACCAAAATAAGTGCATCGATCCCAACAAGACATCACTGA GCCTCCCTGCTCCTTACTGCGGCAAGGCCTCAGAGCAGGTCTTCACAAGG ACCTTGTAGAATCTTAAATCCAAATCTAATTTCGCTGTAGGTTCAGAACA AGGGATCGGGCCCAGGCACCGACACGTACGGCTTGGTTCGGAAGCCGAAA AGAAAACCCGACCAGCAAAGGGAGGGCACCTCGAAACTCCACGATACGTC GGTTGCGGTGAATTCGAGCGGGAACGGTGGGCCCACCATGCCTCCTTTGC AACGGAAGAAACAGGAAGACTTCTAGACACGAGAACCACGCCCATCGGTA GAAATGGCTCGGAGACCAATACTGCGGCAACTCGGCGGGCGGTCGGCGCC GACGAACAACCCTGAGTTCGTGCCCCTCAGGGATGACTCGGCCTCCGTTC CTCTCGAAGACGGCCCAAAATCGTCGTCCGCTGGTAACGAAAAATCTCCA CGCGGAGGAGGGCAGCGCATCCAGCTCCTGGATCATTATCGCGAAGCAAA CGGGATGGCAGTCTGTTCGATGTCAGCTTCGTGCGCAACTGTGTCGCGTG CACCCCGGCCGTCCGGAGCCTCATGGGGTAGGAAGCGAAGCACGGGCAAG TCGCTTGTTATCCGGAGCGCGCGTGGTCTATTGTTGCGGTGTGGACTGCA GTGCGGCCGCGCTTGGCGGCGCCTCGCCTGCCGCTGGTGGGGCGACGGTC CAGGGACCTAAGGGGGAATCTCTTGTAGCATCGGCGTGTTCTCCGCCGTT ATCGTTGCCTTGGTGCTGTTGTGACCTCGGGGATCGCTCATCACACGCTT TCCTCTGCGTAGGGTATGAGGGGGTGTTCGTGGGTAGATGTGCCCCTCTC TGTACTAGCATGTTCCGTGTTTTGGACCTCACTCTGACACGTGAAATATG AAATAATCTACTTTTTCGATCTTGCGAATTCGATAGATTGTCGGGACGAC AATGCTCATTTCGAGAACCCGGTGGGCACATCCTTCACGTGAACCAATCA CCGTTTCCCCGAATCTATCGAGATCAATTTCAAATTGCGGAAGCAGAAAA GACCTTGAGATCCACTCTCACCTCACCGTTCAACCGGGCTACCCACCTCT ACGATAAAAGGCACGTCTGGGTGCCGCGTGCGTGAGTGGACAGCGAAGTT GGGTCCGAGGCAAGCGTATTCGTCTCCTCGGCCGCCGGATAGTGGCTGGA CCGTTCCTTGACGCCTCTGTGCATCCGATGCCGTCGGCTTTTCGGCGACG ACGGCGCCGATCTCCACCTCGTCGCCCGCTAGGTTTCACCGCTTTCTCCG CGATCTCACTCTCCGTTTTCGTCCGCCGTTGCCTCCTCCGTCCAGCGGTC TGGCCATGAGGAGGCGGGACTTCGAGGTTCGGAATCAGAGGGGCCTGAAG CTTGTGTGCAGCCAGTGGCGACCGGCGTTCATCGAGGACACGTCGAAGCT GCCCTGCGTCGTCTATCTCCATGGGAACAGCTCGGCCCGCGTCGACGTGG TTAAGACGAGCTCACTTCGGGTAAGACGGTTGTGTTTCTGTTGCTGTTGT TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTGCTGTTG CTGTTATTCTTGTTGTTGTTCTTGTCGTTGACCCATCATCGTCTACTTGC GCTAGTCGTTGTATTGGATGTAAGTTGATCACGGATCTTCGTCCTGCGCT GTCGTTGTATCGGATGTGGATTTATCACGGATCTTGGCTTCGGTGAAGGA CGAGGAGCCGCGCAAAACGCAAAACAGAATGCGTTCCCTCCCCCTCTCCC CACAGCTCCCAATCTAGCGGCTGTCGAGGGGCTCTGGAGCGAATTGTTTT GAAAGTCGACACCTTCTACTCGCACGGTGTTTGTCGAGTTTCTCACAAAT TTCCGAAGGAAAGACTGCCGCATGCAGATACAGACAGAAGGTGCAACACC CTTTTTTTTGTTCTCTGCCAACGAAGCAACGGATAGATCGATGAAAAAGA AACTGTGTGTACCTTTGCTTCTTTTCTCCAGGTCTTGGGCACAGCGGCGT GCACGGTAGTTTCGTTCGACTTCTCCGGCTCGGGCATGTCCGAGGGAGAT TTTGTGACGCTAGGGTACTTCGAGCAGCACGACGTGGCCGACGTTCTGGC CTACCTTCGAAGCAACGGT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14275:140..2708-

>mRNA_H-canaliculatus_F_contig14275.3360.1 ID=mRNA_H-canaliculatus_F_contig14275.3360.1|Name=mRNA_H-canaliculatus_F_contig14275.3360.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14275:140..2708- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGAG
TGGTGGCAGCGCCAGAGGGCGGGGCGGAAGCAGAACAGTAGTCGTGGAAA
GACGGCGAGGGAGTGCCGGGGTGGGAGGAAGAGGAGCAAGAGCGCTTACA
ACGCCGAAGCGGTCGAGATCGAAGTCTGCAATAGACCTCGCCAGGTCTGG
GTGGTACAACAAGATCGTCTTGGCGATCGTCCGGCCGCCGAGGTGCAAGT
ACACCCTGGGTGACCTGGGCAACGAGCTGACTCCCGTTAGCAGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGAGTGGTGGC
AGCGCCAGAGGGCGGGGCGGAAGCAGAACAGTAGTCGTGGAAAGACGGCG
AGGGAGTGCCGGGGTGGGAGGAAGAGGAGCAAGAGCGCTTACAACGCCGA
AGCGGTCGAGATCGAAGTCTGCAATAGACCTCGCCAGGTCTGGGTGGTAC
AACAAGATCGTCTTGGCGATCGTCCGGCCGCCGAGGTGCAAGTACACCCT
GGGTGACCTGGGCAACGAGCTGACTCCCGTTAGCAGCGGTCTGGCCATGA
GGAGGCGGGACTTCGAGGTTCGGAATCAGAGGGGCCTGAAGCTTGTGTGC
AGCCAGTGGCGACCGGCGTTCATCGAGGACACGTCGAAGCTGCCCTGCGT
CGTCTATCTCCATGGGAACAGCTCGGCCCGCGTCGACGTGGTTAAGACGA
GCTCACTTCGGCGGTCTGGCCATGAGGAGGCGGGACTTCGAGGTTCGGAA
TCAGAGGGGCCTGAAGCTTGTGTGCAGCCAGTGGCGACCGGCGTTCATCG
AGGACACGTCGAAGCTGCCCTGCGTCGTCTATCTCCATGGGAACAGCTCG
GCCCGCGTCGACGTGGTTAAGACGAGCTCACTTCGGGTCTTGGGCACAGC
GGCGTGCACGGTAGTTTCGTTCGACTTCTCCGGCTCGGGCATGTCCGAGG
GAGATTTTGTGACGCTAGGGTACTTCGAGCAGCACGACGTGGCCGACGTT
CTGGCCTACCTTCGAAGCAACGGTGTCTTGGGCACAGCGGCGTGCACGGT
AGTTTCGTTCGACTTCTCCGGCTCGGGCATGTCCGAGGGAGATTTTGTGA
CGCTAGGGTACTTCGAGCAGCACGACGTGGCCGACGTTCTGGCCTACCTT
CGAAGCAACGGT
back to top