mRNA_H-canaliculatus_F_contig14272.3358.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14272.3358.1
Unique NamemRNA_H-canaliculatus_F_contig14272.3358.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Match: D7G3G7_ECTSI (ER membrane protein complex subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3G7_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 6.410e-23
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    7 MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKADKALDKEEVSHK 162
            MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKADK LDKEE+S+K
Sbjct:    1 MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKADKPLDKEELSYK 52
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Match: A0A7R9UVV5_DIALT (ER membrane protein complex subunit 3 n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UVV5_DIALT)

HSP 1 Score: 56.6 bits (135), Expect = 5.330e-8
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   16 EHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKAD-KALDKEEV 153
              LVLDPAIRDWV  PL++++ LVG+LRHN T+LL++D K  DKE+V
Sbjct:   20 HELVLDPAIRDWVFLPLIVIMFLVGILRHNATSLLRSDPKPGDKEQV 66
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Match: A0A7S3NPS9_9STRA (ER membrane protein complex subunit 3 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPS9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-7
Identity = 25/49 (51.02%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   16 EHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKADKALDKEEVSHK 162
            E L+LDPAIRDWVV P++++++L+G+ RH    LLK+ ++LD  E+ HK
Sbjct:    6 EALLLDPAIRDWVVLPMVVLMVLMGLARHYAQQLLKSSQSLDAMEIQHK 54
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Match: A0A1D1XCG9_9ARAE (ER membrane protein complex subunit 3 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XCG9_9ARAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.700e-7
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 GAMGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKADKALDKEEV 153
            G M GE LVLD AIRDWV+ PL L+++L+GVLRH +  L+++ +  D + V
Sbjct:   52 GGMAGEDLVLDTAIRDWVLIPLSLVMVLIGVLRHFVAKLMRSQQLPDHKAV 102
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Match: A0A7S1U0N1_9STRA (ER membrane protein complex subunit 3 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0N1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.950e-7
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    7 MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKADKALDKEEVSHK 162
            M  E LVLDP+IR+WVV PL++M++ +GV+RH I  LLK+D  +D  ++  K
Sbjct:   63 MADELLVLDPSIRNWVVMPLVMMMLFMGVVRHYIQGLLKSDPVMDAGDIKVK 114
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Match: S9RN17_SCHOY (ER membrane protein complex subunit 3 n=2 Tax=Schizosaccharomyces TaxID=4895 RepID=S9RN17_SCHOY)

HSP 1 Score: 53.9 bits (128), Expect = 4.450e-7
Identity = 26/47 (55.32%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   16 EHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKAD-KALDKEEV 153
            + L+LDPA+R+WV+ P+M ++IL+GVLRHN T LL++  K L KEE+
Sbjct:    2 QQLLLDPALRNWVLLPIMFIMILIGVLRHNATILLQSSPKRLTKEEI 48
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Match: A0A0E9NQN0_SAICN (ER membrane protein complex subunit 3 n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NQN0_SAICN)

HSP 1 Score: 53.9 bits (128), Expect = 4.730e-7
Identity = 24/41 (58.54%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    4 AMGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKA 126
            A+  + L LDPA+RDWV+FP++ ++ILVG+LRHNIT LL++
Sbjct:    2 AIEDQDLYLDPALRDWVLFPILFVMILVGILRHNITVLLQS 42
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Match: YNY3_SCHPO (ER membrane protein complex subunit 3 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=YNY3_SCHPO)

HSP 1 Score: 53.5 bits (127), Expect = 6.150e-7
Identity = 25/47 (53.19%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   16 EHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKAD-KALDKEEV 153
            + L+LDPA+R+WV+ P+M ++IL+G+LRHN T LL++  K L KEE+
Sbjct:    2 QKLLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEI 48
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Match: G4TK66_SERID (ER membrane protein complex subunit 3 n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TK66_SERID)

HSP 1 Score: 53.5 bits (127), Expect = 6.500e-7
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    7 MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALL-----KADKALDKEE 150
            M G+ L LDP IRDWV+FP+ L++ILVGVLRHNI  L+     K  +A  +E+
Sbjct:    1 MAGDSLYLDPQIRDWVLFPITLVMILVGVLRHNIVQLIASSPKKLSRAATREQ 53
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Match: A0A843UR57_COLES (ER membrane protein complex subunit 3 n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UR57_COLES)

HSP 1 Score: 52.8 bits (125), Expect = 1.350e-6
Identity = 24/49 (48.98%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    7 MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKADKALDKEEV 153
            M GE LVLD AIRDWV+ PL ++++L+GVLR+ ++ L+++ ++LD++ V
Sbjct:    1 MAGEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSHQSLDQKVV 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14272.3358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3G7_ECTSI6.410e-2394.23ER membrane protein complex subunit 3 n=2 Tax=Ecto... [more]
A0A7R9UVV5_DIALT5.330e-861.70ER membrane protein complex subunit 3 n=2 Tax=Diac... [more]
A0A7S3NPS9_9STRA1.410e-751.02ER membrane protein complex subunit 3 n=1 Tax=Aure... [more]
A0A1D1XCG9_9ARAE2.700e-750.98ER membrane protein complex subunit 3 (Fragment) n... [more]
A0A7S1U0N1_9STRA3.950e-750.00ER membrane protein complex subunit 3 n=1 Tax=Phae... [more]
S9RN17_SCHOY4.450e-755.32ER membrane protein complex subunit 3 n=2 Tax=Schi... [more]
A0A0E9NQN0_SAICN4.730e-758.54ER membrane protein complex subunit 3 n=2 Tax=Sait... [more]
YNY3_SCHPO6.150e-753.19ER membrane protein complex subunit 3 n=1 Tax=Schi... [more]
G4TK66_SERID6.500e-752.83ER membrane protein complex subunit 3 n=1 Tax=Sere... [more]
A0A843UR57_COLES1.350e-648.98ER membrane protein complex subunit 3 n=1 Tax=Colo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14272contigH-canaliculatus_F_contig14272:271..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D7G3G7
Preferred nameEMC3
KEGG koko:K02907
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001894,GO:0001895,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0006457,GO:0006726,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009611,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016063,GO:0019538,GO:0022008,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030154,GO:0030176,GO:0030182,GO:0031224,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034975,GO:0042051,GO:0042052,GO:0042060,GO:0042175,GO:0042440,GO:0042441,GO:0042461,GO:0042462,GO:0042592,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045494,GO:0046148,GO:0046154,GO:0046530,GO:0048066,GO:0048069,GO:0048468,GO:0048513,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0048871,GO:0050896,GO:0060041,GO:0060249,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0072546,GO:0090596,GO:0097708,GO:0098796,GO:0098827,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsKOG3188@1,KOG3188@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categorysignal anchor
Exons1
Model size165
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.124639-CDS-H-canaliculatus_F_contig14272:270..4291622929176.124639-CDS-H-canaliculatus_F_contig14272:270..429Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14272 271..429 -
1696845707.1333582-CDS-H-canaliculatus_F_contig14272:270..4291696845707.1333582-CDS-H-canaliculatus_F_contig14272:270..429Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14272 271..429 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.1418066-UTR-H-canaliculatus_F_contig14272:429..4351622929176.1418066-UTR-H-canaliculatus_F_contig14272:429..435Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14272 430..435 -
1696845707.1450913-UTR-H-canaliculatus_F_contig14272:429..4351696845707.1450913-UTR-H-canaliculatus_F_contig14272:429..435Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14272 430..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14272.3358.1prot_H-canaliculatus_F_contig14272.3358.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14272 271..429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14272.3358.1

>prot_H-canaliculatus_F_contig14272.3358.1 ID=prot_H-canaliculatus_F_contig14272.3358.1|Name=mRNA_H-canaliculatus_F_contig14272.3358.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=53bp
MGGEHLVLDPAIRDWVVFPLMLMVILVGVLRHNITALLKADKALDKEEVS
HK*
back to top

mRNA from alignment at H-canaliculatus_F_contig14272:271..435-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14272.3358.1 ID=mRNA_H-canaliculatus_F_contig14272.3358.1|Name=mRNA_H-canaliculatus_F_contig14272.3358.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14272:271..435- (Hapterophycus canaliculatus Oshoro5f female)
GGAGCCATGGGAGGCGAACACCTCGTTCTCGATCCGGCCATCCGGGACTG
GGTGGTTTTCCCCCTGATGCTTATGGTGATCCTGGTGGGAGTACTTCGAC
ACAACATCACCGCTCTCCTCAAAGCCGACAAGGCCTTGGATAAGGAAGAA
GTCAGCCACAAGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14272:271..435-

>mRNA_H-canaliculatus_F_contig14272.3358.1 ID=mRNA_H-canaliculatus_F_contig14272.3358.1|Name=mRNA_H-canaliculatus_F_contig14272.3358.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=318bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14272:271..435- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGGCGAACACCTCGTTCTCGATCCGGCCATCCGGGACTGGGTGGT
TTTCCCCCTGATGCTTATGGTGATCCTGGTGGGAGTACTTCGACACAACA
TCACCGCTCTCCTCAAAGCCGACAAGGCCTTGGATAAGGAAGAAGTCAGC
CACAAGTGAATGGGAGGCGAACACCTCGTTCTCGATCCGGCCATCCGGGA
CTGGGTGGTTTTCCCCCTGATGCTTATGGTGATCCTGGTGGGAGTACTTC
GACACAACATCACCGCTCTCCTCAAAGCCGACAAGGCCTTGGATAAGGAA
GAAGTCAGCCACAAGTGA
back to top