mRNA_H-canaliculatus_F_contig1427.3355.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1427.3355.1
Unique NamemRNA_H-canaliculatus_F_contig1427.3355.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Match: D8LRU4_ECTSI (MND1 family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU4_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 2.110e-101
Identity = 159/205 (77.56%), Postives = 181/205 (88.29%), Query Frame = 1 
Query:  208 MVRKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQSLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEKIEANKRKISELQQGRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDPAELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKTDFDYV 822
            MV++GLS+EEKRDK+L IYHST+AIY+LK+IEKAASKQGVT+ TVKDVNQSLVDDGLVDMDKIG+SNFFWSFPSKVAVTKQN VD L+Q+IA   KAE+   ANKRK SEL++GR DT  RREKL R+QE G R+Q LE+EYESL+ENDPAEL+K   L QVCKDGVNRWTDN+WCIK+WMVKTKGMSGKDVD+YLQIK DFD V
Sbjct:    1 MVKRGLSVEEKRDKVLDIYHSTKAIYSLKEIEKAASKQGVTINTVKDVNQSLVDDGLVDMDKIGASNFFWSFPSKVAVTKQNVVDNLEQSIA---KAEDNTAANKRKFSELEEGRADTASRREKLGRLQENGLRLQELEKEYESLKENDPAELEKVARLTQVCKDGVNRWTDNSWCIKSWMVKTKGMSGKDVDRYLQIKGDFDLV 202
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Match: F5BX17_UNDPI (Meiotic nuclear division protein 1 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=F5BX17_UNDPI)

HSP 1 Score: 280 bits (717), Expect = 4.590e-89
Identity = 143/205 (69.76%), Postives = 173/205 (84.39%), Query Frame = 1 
Query:  208 MVRKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQSLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEKIEANKRKISELQQGRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDPAELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKTDFDYV 822
            MV+KGLSLEEKR KIL IYH T++I++LK+IEKAASKQGV  QT+KDVNQSLVDDGLVDMDKIG SNFFWSFPSK  V +QN +D LK++IA   KAE+    NKRKI+ L + R DT +R+ KLRR+Q+  QR+++LE EYE+L+ENDPAEL+K  ++A+VCKDGVNRWTDNTW IK+WMVKT+GMSG DVDKYLQIK DFD+V
Sbjct:    1 MVKKGLSLEEKRAKILNIYHGTKSIFSLKEIEKAASKQGVVSQTIKDVNQSLVDDGLVDMDKIGPSNFFWSFPSKAVVDRQNLIDSLKRDIA---KAEDTAAVNKRKIASLVEERADTEERQLKLRRLQDNKQRVKQLESEYETLKENDPAELEKVTNVAEVCKDGVNRWTDNTWSIKSWMVKTRGMSGADVDKYLQIKADFDHV 202
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Match: A0A7S2XYC3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYC3_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.440e-62
Identity = 108/204 (52.94%), Postives = 149/204 (73.04%), Query Frame = 1 
Query:  214 RKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQSLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEKIEANKRKISELQQ-GRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDPAELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKTDFDYV 822
            RKGLSLEEKR +IL IYHS+  +YNLK+IEK ASK GV +QT+KDVNQSL+DD LVD DKIGS+NFFWSFPSKV V K+ +++ L++ I     ++ ++ A + K+++L+  GR D+  RRE L ++ +  +R   L+E  + L+ENDP EL +  +L +  K+ VNRWTDN W +K+W VK KGM  KDVD+Y+Q+  DFDY+
Sbjct:    5 RKGLSLEEKRQRILGIYHSSGEVYNLKEIEKIASKAGVVLQTIKDVNQSLIDDHLVDADKIGSANFFWSFPSKVYVVKKTKIESLQKQIED---SKRQLNAAQDKVADLENAGRQDSNTRREGLAKLDQERKRGSELDERLQCLKENDPEELLRLKNLQEEIKEHVNRWTDNIWAVKSWCVKKKGMPSKDVDRYMQLPQDFDYI 205
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Match: A0A0P1AFA8_PLAHL (Protein involved in meiotic recombination/predicted coiled-coil protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFA8_PLAHL)

HSP 1 Score: 193 bits (491), Expect = 2.300e-55
Identity = 99/205 (48.29%), Postives = 149/205 (72.68%), Query Frame = 1 
Query:  208 MVRKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQSLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEKIEANKRKISELQQGRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDPAELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKTDFDYV 822
            M RKG+SL+EKR++IL IYH ++ ++NLK++EK  SK GV +QTVKDVNQ+LVDD LVD DKIGS N+FWSFPSK++ +++ ++  L+Q   Q    +EK++  K KI E Q  R D+ +R +KL+R++E+  +++ L    + L ENDPA L+       + K+G +RWTDN + +K+W+VK +G+ GK+V+K+L+I+ DFDYV
Sbjct:    1 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQ-CRQA--RQEKLDRVKEKIEEQQALRSDSDERIQKLKRLEELKVKVESLRNTMQHLAENDPAILEDLECKVGIAKEGADRWTDNVFTLKSWVVKKRGVEGKEVNKWLEIQDDFDYV 202
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Match: H3HEE5_PHYRM (Uncharacterized protein n=24 Tax=Phytophthora TaxID=4783 RepID=H3HEE5_PHYRM)

HSP 1 Score: 189 bits (480), Expect = 9.600e-54
Identity = 97/205 (47.32%), Postives = 148/205 (72.20%), Query Frame = 1 
Query:  208 MVRKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQSLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEKIEANKRKISELQQGRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDPAELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKTDFDYV 822
            M RKG+SL+EKR++IL IYH ++ ++NLK++EK  SK GV +QTVKDVNQ+LVDD LVD DKIGS N+FWSFPSK++ T++ ++  L+Q       A++K+   K+ + + +  R ++ +R +KLRR++E   ++Q L  + + L ENDP  L++     ++ K+G +RWTDN + +K+W+VK +G+ GK+VDK+L IK DFDYV
Sbjct:    1 MPRKGVSLQEKRERILRIYHESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDVLVDCDKIGSGNYFWSFPSKLSQTRRRKLSELEQRHQT---AQDKLVKVKQNVEKQKGLRPESEERVQKLRRLEEQKAKVQVLRTKVQHLAENDPEILEQLERKVRMAKEGSDRWTDNVYTLKSWVVKKRGVEGKEVDKWLGIKDDFDYV 202
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Match: F0WB11_9STRA (Meiotic nuclear division protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WB11_9STRA)

HSP 1 Score: 182 bits (462), Expect = 4.510e-51
Identity = 88/203 (43.35%), Postives = 142/203 (69.95%), Query Frame = 1 
Query:  214 RKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQSLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEKIEANKRKISELQQGRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDPAELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKTDFDYV 822
            RKG+SLEEKR++++ IYH ++ ++NLK++EK  SK G+ +QT+KDVNQ+LVDD LVD DKIGS N+FWSFPSK +  ++ + D L Q    +   +E++ + +  I++ ++ RV++ +R EKL  + ++G+R+  L+E  +   ENDP  L +     +  K+G +RWTDN + +++W+V+ +G+   +VDK+L IK DFDYV
Sbjct:    5 RKGVSLEEKRERLMQIYHDSKEVFNLKEVEKLGSKAGIVLQTIKDVNQALVDDNLVDFDKIGSGNYFWSFPSKYSEQRKRKRDELHQKYRLL---QERVTSTQETIAKERELRVESEERTEKLSHLIKLGERLSNLKENLKQFEENDPRALNELQKSVKTVKEGADRWTDNAFNLRSWIVQKRGVPTSEVDKWLGIKDDFDYV 204
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Match: A0A485L1B8_9STRA (Aste57867_14478 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1B8_9STRA)

HSP 1 Score: 182 bits (462), Expect = 4.510e-51
Identity = 96/203 (47.29%), Postives = 138/203 (67.98%), Query Frame = 1 
Query:  214 RKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQSLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEKIEANKRKISELQQGRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDPAELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKTDFDYV 822
            +KG+SL+EKR++IL IYH T  +YNLK++EK  SK GV +QT+KDVNQ+LVDD LVD DKIGS N+FWSFPSKVA  ++ +++ L+   A+  +   KIE  K+ I   +  R D+ DR EKL R+  +  +    +++   L ENDP  LKK     ++ K+GV+RWTDN + +K+W++K    S  +V+K+L +K DFDYV
Sbjct:    5 KKGVSLDEKRERILKIYHDTLEVYNLKEVEKIGSKAGVVLQTIKDVNQALVDDSLVDTDKIGSGNYFWSFPSKVAQQRKRKLEDLE---AKRTELRGKIETAKQTIEAQKHLRTDSADRVEKLNRLAALKTQNADTKQKLHLLSENDPDVLKKLEAKVKLAKEGVDRWTDNVFNLKSWVIKKNSCSSAEVEKWLGVKDDFDYV 204
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Match: A0A7S3XLC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLC7_HETAK)

HSP 1 Score: 180 bits (457), Expect = 1.020e-50
Identity = 95/203 (46.80%), Postives = 129/203 (63.55%), Query Frame = 1 
Query:  214 RKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQSLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEKIEANKRKISELQQGRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDPAELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKTDFDYV 822
            RKG+S EEKR +IL IYH  + + NLK++EK   KQGV VQ++K+VNQ+LVDD LVD DKIGS+NFFWSFPSKVA               ++L A                GR DT  RR +L+++Q+   R   L++  ++L+ENDP EL +     + CK+  NRWTDN W +K+W +K KGM+  +VD+YLQ+ +DFDYV
Sbjct:    5 RKGVSYEEKRTRILGIYHEKKEVLNLKELEKLGVKQGVVVQSIKEVNQALVDDNLVDTDKIGSANFFWSFPSKVA---------------ELLGA----------------GRHDTPQRRAQLQKLQDEKAREAALDQRLDTLKENDPRELARIETETEKCKEAANRWTDNIWALKSWCIKKKGMASTEVDRYLQLSSDFDYV 176
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Match: A0A5D6Y0R0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0R0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.370e-50
Identity = 91/203 (44.83%), Postives = 141/203 (69.46%), Query Frame = 1 
Query:  214 RKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQSLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEKIEANKRKISELQQGRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDPAELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKTDFDYV 822
            RKG+SLEEKR +IL IYH ++ ++NLK++EK  +K GV +QT+KDVNQ+LVDDGLVD DKIGS N+FWSFPSK++  ++ ++  L+Q  A    A++K+   ++ I E +  R ++ DR  KL+R+ E+   ++ L+ + + L +NDP  L +     QV K G +RWTDN + +++W+ + +G +  +VDK+L IK DFDY+
Sbjct:    4 RKGVSLEEKRARILHIYHDSKDVFNLKEVEKIGAKAGVVLQTIKDVNQALVDDGLVDCDKIGSGNYFWSFPSKLSQARKRKLGELEQRKAA---AQDKLAKVRQSIDEQKSKRTESDDRAAKLQRLAELQASVKDLKAKVQHLADNDPEILAQLERSVQVAKIGADRWTDNVFTMRSWVAQKRGCASSEVDKWLGIKDDFDYI 203
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Match: A0A8K1FKH2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKH2_PYTOL)

HSP 1 Score: 179 bits (453), Expect = 9.410e-50
Identity = 90/203 (44.33%), Postives = 140/203 (68.97%), Query Frame = 1 
Query:  214 RKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQSLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEKIEANKRKISELQQGRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDPAELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKTDFDYV 822
            +KG+SLEEKR++IL IYH ++ +YN+K+IEK  +K GV +QT+KDVNQ+LVDD LVD DKIGS N+FWSFPSKV+  ++ ++  L+Q         E++   K+++ + +  R D+ DR  KL+R+ E+   ++ ++ + + L +NDPA L+      QV K G +RWTDN + +++W+ + +G S  +VDK+L IK DFDY+
Sbjct:    5 KKGVSLEEKRERILKIYHESKDVYNIKEIEKLGAKAGVVLQTIKDVNQALVDDALVDFDKIGSGNYFWSFPSKVSQQRKRKLSELEQRKQST---SEQLSKVKQEVEKQKSLRTDSDDRVAKLQRLAELQTHVKDMKAKIQHLADNDPAILEHLERNMQVAKVGADRWTDNVYTVRSWVAQKRGCSTGEVDKWLGIKDDFDYI 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1427.3355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU4_ECTSI2.110e-10177.56MND1 family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
F5BX17_UNDPI4.590e-8969.76Meiotic nuclear division protein 1 n=1 Tax=Undaria... [more]
A0A7S2XYC3_9STRA1.440e-6252.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0P1AFA8_PLAHL2.300e-5548.29Protein involved in meiotic recombination/predicte... [more]
H3HEE5_PHYRM9.600e-5447.32Uncharacterized protein n=24 Tax=Phytophthora TaxI... [more]
F0WB11_9STRA4.510e-5143.35Meiotic nuclear division protein putative n=1 Tax=... [more]
A0A485L1B8_9STRA4.510e-5147.29Aste57867_14478 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3XLC7_HETAK1.020e-5046.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5D6Y0R0_9STRA2.370e-5044.83Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1FKH2_PYTOL9.410e-5044.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1427contigH-canaliculatus_F_contig1427:7603..11499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.0
Seed ortholog evalue2.1e-82
Seed eggNOG ortholog2880.D8LRU4
Preferred nameMND1
KEGG koko:K11997,ko:K22381
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009553,GO:0009555,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048229,GO:0048285,GO:0048856,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.homologous recombination
EggNOG OGsCOG5124@1,KOG3433@2759
EC2.3.2.27
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMND1 family
Ec32 orthologEc-08_002470.1
Exons6
Model size1536
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1427.3355.1prot_H-canaliculatus_F_contig1427.3355.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1427 8452..10788 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.9193769-UTR-H-canaliculatus_F_contig1427:7602..76741622929175.9193769-UTR-H-canaliculatus_F_contig1427:7602..7674Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1427 7603..7674 +
1696845707.0553064-UTR-H-canaliculatus_F_contig1427:7602..76741696845707.0553064-UTR-H-canaliculatus_F_contig1427:7602..7674Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1427 7603..7674 +
1622929175.9375045-UTR-H-canaliculatus_F_contig1427:8316..84511622929175.9375045-UTR-H-canaliculatus_F_contig1427:8316..8451Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1427 8317..8451 +
1696845707.0697742-UTR-H-canaliculatus_F_contig1427:8316..84511696845707.0697742-UTR-H-canaliculatus_F_contig1427:8316..8451Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1427 8317..8451 +
1622929176.0519001-UTR-H-canaliculatus_F_contig1427:10788..114991622929176.0519001-UTR-H-canaliculatus_F_contig1427:10788..11499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1427 10789..11499 +
1696845707.123765-UTR-H-canaliculatus_F_contig1427:10788..114991696845707.123765-UTR-H-canaliculatus_F_contig1427:10788..11499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1427 10789..11499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.9546914-CDS-H-canaliculatus_F_contig1427:8451..85891622929175.9546914-CDS-H-canaliculatus_F_contig1427:8451..8589Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 8452..8589 +
1696845707.0787258-CDS-H-canaliculatus_F_contig1427:8451..85891696845707.0787258-CDS-H-canaliculatus_F_contig1427:8451..8589Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 8452..8589 +
1622929175.9703853-CDS-H-canaliculatus_F_contig1427:8792..89421622929175.9703853-CDS-H-canaliculatus_F_contig1427:8792..8942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 8793..8942 +
1696845707.0893497-CDS-H-canaliculatus_F_contig1427:8792..89421696845707.0893497-CDS-H-canaliculatus_F_contig1427:8792..8942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 8793..8942 +
1622929176.0055165-CDS-H-canaliculatus_F_contig1427:9243..93561622929176.0055165-CDS-H-canaliculatus_F_contig1427:9243..9356Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 9244..9356 +
1696845707.0984082-CDS-H-canaliculatus_F_contig1427:9243..93561696845707.0984082-CDS-H-canaliculatus_F_contig1427:9243..9356Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 9244..9356 +
1622929176.0176058-CDS-H-canaliculatus_F_contig1427:9821..99031622929176.0176058-CDS-H-canaliculatus_F_contig1427:9821..9903Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 9822..9903 +
1696845707.1069572-CDS-H-canaliculatus_F_contig1427:9821..99031696845707.1069572-CDS-H-canaliculatus_F_contig1427:9821..9903Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 9822..9903 +
1622929176.0388756-CDS-H-canaliculatus_F_contig1427:10653..107881622929176.0388756-CDS-H-canaliculatus_F_contig1427:10653..10788Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 10654..10788 +
1696845707.1153572-CDS-H-canaliculatus_F_contig1427:10653..107881696845707.1153572-CDS-H-canaliculatus_F_contig1427:10653..10788Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 10654..10788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1427.3355.1

>prot_H-canaliculatus_F_contig1427.3355.1 ID=prot_H-canaliculatus_F_contig1427.3355.1|Name=mRNA_H-canaliculatus_F_contig1427.3355.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MVRKGLSLEEKRDKILAIYHSTQAIYNLKDIEKAASKQGVTVQTVKDVNQ
SLVDDGLVDMDKIGSSNFFWSFPSKVAVTKQNRVDFLKQNIAQVLKAEEK
IEANKRKISELQQGRVDTGDRREKLRRVQEIGQRMQRLEEEYESLRENDP
AELKKAVHLAQVCKDGVNRWTDNTWCIKNWMVKTKGMSGKDVDKYLQIKT
DFDYV*
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mRNA from alignment at H-canaliculatus_F_contig1427:7603..11499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1427.3355.1 ID=mRNA_H-canaliculatus_F_contig1427.3355.1|Name=mRNA_H-canaliculatus_F_contig1427.3355.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3897bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1427:7603..11499+ (Hapterophycus canaliculatus Oshoro5f female)
AGTCTTACAGTGGGCATTACAGAGGACAGACAGAGACACAGATAAAACTT
CGAGTATCCATCCATAGGACAGGTGCGTTTCACGGTTTAAGGCGAGATGT
GGCACTGCTGCGGTAGTCGCTGTCCGTCATGCAGGCCTGGAGAGGTTCTC
GTACGTTATTATTGCGGACCCCCTGATCGAGAAGCTGGTAAAGTAATAAT
AAAACCTGCGACCTGTTGACAAAAATGGTGGATGCACGTAATTTTGTACA
ACGTCTTCTCCTTCTCCGTTTTCATCTTCTCCGCAACTGATTTCTCTTTT
CAGGCAGATTCGTTCAACGGGTCGCAACACGTGTGAATAGCCGCCGGCGA
CACACGACTCTGTTTATCCTTTCTAGTGCCCAAAGTCTAATAATTAGCAT
TTCGTGCGCACCCAGGGGTGTGTCTCCTTCGTCCCCGTTCGTTCAACTAT
TATCTCATCCGCCGTAAATAAGATTGCAAGCTTTCAACGAGAACATGCAC
GTCGCGCACGCATGTCCGCTGATCATTGTTGTCAATCACGTCCTGGTGGC
GTCGGTGTTTTGAGGAGCAGTGGATCGTCTCACATGAAGGTAGAGGCTCT
TCGCAGGCACGCCCTGGGCGACTATTAATAGTCTACAAGGCAGTCTACGG
CAGGTAGCGCAGTGCATTACCCACCTGCTCTCTTTCTGCTCGCATCGTCT
TGTTCGCTTCACAGCTGTAGCGCACTTGAACACAGCGACCTCCGGAACGC
GGACAACGGCCAAAAGTGAAAGTTGTACTAGGACGACACGTTTTGCACGG
AAGCGGCGACAACGTACCTTTGTTTTACAGCAGCGCACAAGGCGTAGCAA
TGGTGAGGAAGGGGCTGTCCCTTGAGGAAAAGCGAGACAAGATACTCGCC
ATCTATCATTCTACTCAGGCGATCTACAACCTGAAGGATATCGAGAAAGC
CGCGTCGAAGCAAGGCGTGACAGTGCAAACTGTGAAGGCAAGTATACTTC
TGTTGTGCATCAAGCGTCAGGTAGCTCATCAGCGCTACTGCTCTCCGGAA
GTCGTACTGCGCGTCGGGCGGCTTTGCTGTCGTTCGGTGTCTATTTGCCT
GTTTGTCGTGACAGAAGCGGTGTAGCGAAATCTGTCTGATCCCGCCTTAT
GCTCTCATGGCTGTTGCTTTTATACCGTGATCCTCCTCAGGATGTGAACC
AATCCTTGGTAGACGATGGCCTCGTGGACATGGACAAGATCGGTTCTTCA
AACTTCTTTTGGTCCTTCCCTTCGAAAGTGGCCGTGACCAAGCAAAACAG
GGTCGATTTCCTCAAGCAAAACATCGCCCAGGTACTTAAGGCAGGTCCTG
CGGATTGCATGAAATCGATTCGGCACGAGGGGGGGTTGCCAAACGTCTTC
TATTTGGGGTATTGTTCAGTCGTTGAATGGACTACGTATTCGCCCTGGGT
CGATTTTATTTTGACGTCCAGCACGTTCAGACCTAAGTTGTCATCGTGAC
TTCGCACCTCTCCCTTGGTCGGCTTCCTACAGTAGTATTGGTAGGACAAG
AGGAACCTGCTCCTTTACAGTGATACGAAAAAGAGGCAACTCCGAGGTGC
CGGTGACCGCCTGGTTGCCATTCTCATACCCCGCGCGTTAGGCGGAAGAG
AAAATCGAGGCCAACAAACGAAAGATATCTGAGCTACAACAAGGCCGCGT
GGATACAGGAGACCGAAGGGAGAAGCTGAGACGCGTGCAAGAAATCGGCC
AACGGTAAGGCCGGAACTTCCCACGACTTGATATATTTCTGCGCGCGCAT
CCAAGACACACTATCAATCTCGCATCTTCGATCAAGGTTCTTGCCGACGA
ACTCCGTAACATATCGACGCGGGAATGTGATCCGAGATGGTGTCAACTTT
TGTTCGTGCCGGGGGTCTATTTGGAAAGCTGTGCATGAAGAATGTGTCCG
TACCCGTGTTTCTCGTTCCCTGTTCCGTACCGGGGTTTGTCGGTTCTGTA
TGCAGGCATCTCCTTGAGTAGATAATTTGAGGGGCTCTGTCGGCTACCAT
TTCCCTTTCGTATCAAGACAGGATGTGAAAGTCAAAAATCCTTGTGGAAT
CGACTTGCGCCGATTCCAGGAACATAATTCTACGGCTGAATTACTCATCA
AAGTTGCTTCCATGCAAAAGTTGAGCGTTCCACACTAACAGATGAGCTTG
ATTTGGTGGTGTTTCGCAGAATGCAGCGACTGGAGGAGGAGTACGAATCC
TTGAGAGAAAATGACCCTGCAGAGTTGAAGAAGGCCGTCCATCTTGCGCA
GGTGAGAAGGGTGTTCAATTCCCCTTAAGACTGTTGCCCACGCTCCAAAG
TCGTTGGACCAACATCTTCTTTGGCAGCCAGCAGTGGTGTGTCTCTGTCA
GTTTGTCACGACTTCGTGACACCGCCGCGCTCTTCTTCGAAAAGTGCGTG
CTCGTGTGTGTGTCGTGTTAACCGAAGCATGCTTCGTGGGGAACCAGACT
CGCATGTTGCTTTCGGTGTGCGAAAACAACTAACGATCACATCTGATACT
CATTCGGCCTTAGTGCGGCTTGGGCGCTCGCAATTTTTCACTGCGCAACA
TGCCTCGGGTTCACCTTTGAGCACTACTTCCAGCCGATATAAATACAGTG
CTCCTGTTGTGATATGACAACCCGCTCGACTTGCTCTTGGTGCCTTCGCC
ACTACGGACGTCAGTGGGAAGCAGTTTTGACTGGTTTTTGCTGGTCATTC
GACGTCCCAAGAGACTCACAAAGATAAGTAAGACCGTTTAAAATAGGTAA
ATATCTGGACCGTGAGGGAACCAGAGGAAAGACGGAGATAACAACATGGC
CCGTGAAGTAGCAGCTAGAGCATCACTCTGACCACTCTGACGCAGCGGGT
ACGCCCGAAAAGTTACAATCCAACAAAGTCGTACATAAGAAGCTGCCTAT
ACACCCTGCACGAAGGGCATGTTTTCATCGTCTAACATACTTTACACGTG
CTCTCTGAAGAGACTGACGCGTCCCTCAAAACCGTTCTGTGTTTTTGTTA
GGTGTGCAAGGACGGCGTGAATCGCTGGACGGACAATACATGGTGCATCA
AGAACTGGATGGTGAAGACGAAGGGCATGAGTGGGAAAGATGTGGACAAG
TACCTGCAAATCAAGACGGATTTCGACTACGTGTAGGGAACACGGCCAGT
TCACGCTTTTGTTTACAAACCTTACTGTAGTGCGAAGCAACCTTCCTTCT
CGAATTCCGCGTCGATCAATCACCTATGGGTTATTGCCTGATTCAAGTTT
CCCCCGGCGAGTCAAAATTTTATAAGTACAACTGGGTTGTCAATAATGTT
CTGCTGCTCTAGATCAGCTTTCGAAAAATTCCTCGAAAGTGTGGATGGAG
TGTGGTACCAGACCAGTTTCATTGCGGTCTGAGTTCAAGGTCAGGAGAAG
CCGGTACTCGATATCTCCGTTTGACATCTTCATACAGTCTGTCCAGAATA
ATGTTACACTTACCTACACCCCCCGTGAGGACTGGTCAGGCGATGAAGTA
GTTCACACACCAACACTTCATGTTCGAACAAGTCGGGAGGGGAAAAGAGA
GAGAGGCTCGCAAGGCGTGTACGTGTCGGGAACCCAATCAGAGTACCACA
ACGGCCAAATCGAGGAGAGCAAGAATTGAGGAGCAGAGCGTGTGGCGTGA
TTCCTGTCGGGCCGAACCCAATGATACACACCGCGAGACTGTTTTCTCTG
TGCGTGTGTGTGCACTAGATAGAGCTTTCATCTAATATTCCCGACTGTAC
AGACAAGAGGTGAGGTGTTCCATGCCCCATCATCGCTCGCTGAATTGTTT
AATTCCGTCGTCCCGTTGTTCGAAGAAAATTGGAAGCAGCCCGCCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1427:7603..11499+

>mRNA_H-canaliculatus_F_contig1427.3355.1 ID=mRNA_H-canaliculatus_F_contig1427.3355.1|Name=mRNA_H-canaliculatus_F_contig1427.3355.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1427:7603..11499+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGAGGAAGGGGCTGTCCCTTGAGGAAAAGCGAGACAAGATACTCGC
CATCTATCATTCTACTCAGGCGATCTACAACCTGAAGGATATCGAGAAAG
CCGCGTCGAAGCAAGGCGTGACAGTGCAAACTGTGAAGATGGTGAGGAAG
GGGCTGTCCCTTGAGGAAAAGCGAGACAAGATACTCGCCATCTATCATTC
TACTCAGGCGATCTACAACCTGAAGGATATCGAGAAAGCCGCGTCGAAGC
AAGGCGTGACAGTGCAAACTGTGAAGGATGTGAACCAATCCTTGGTAGAC
GATGGCCTCGTGGACATGGACAAGATCGGTTCTTCAAACTTCTTTTGGTC
CTTCCCTTCGAAAGTGGCCGTGACCAAGCAAAACAGGGTCGATTTCCTCA
AGCAAAACATCGCCCAGGTACTTAAGGATGTGAACCAATCCTTGGTAGAC
GATGGCCTCGTGGACATGGACAAGATCGGTTCTTCAAACTTCTTTTGGTC
CTTCCCTTCGAAAGTGGCCGTGACCAAGCAAAACAGGGTCGATTTCCTCA
AGCAAAACATCGCCCAGGTACTTAAGGCGGAAGAGAAAATCGAGGCCAAC
AAACGAAAGATATCTGAGCTACAACAAGGCCGCGTGGATACAGGAGACCG
AAGGGAGAAGCTGAGACGCGTGCAAGAAATCGGCCAACGGCGGAAGAGAA
AATCGAGGCCAACAAACGAAAGATATCTGAGCTACAACAAGGCCGCGTGG
ATACAGGAGACCGAAGGGAGAAGCTGAGACGCGTGCAAGAAATCGGCCAA
CGAATGCAGCGACTGGAGGAGGAGTACGAATCCTTGAGAGAAAATGACCC
TGCAGAGTTGAAGAAGGCCGTCCATCTTGCGCAGAATGCAGCGACTGGAG
GAGGAGTACGAATCCTTGAGAGAAAATGACCCTGCAGAGTTGAAGAAGGC
CGTCCATCTTGCGCAGGTGTGCAAGGACGGCGTGAATCGCTGGACGGACA
ATACATGGTGCATCAAGAACTGGATGGTGAAGACGAAGGGCATGAGTGGG
AAAGATGTGGACAAGTACCTGCAAATCAAGACGGATTTCGACTACGTGTA
GGTGTGCAAGGACGGCGTGAATCGCTGGACGGACAATACATGGTGCATCA
AGAACTGGATGGTGAAGACGAAGGGCATGAGTGGGAAAGATGTGGACAAG
TACCTGCAAATCAAGACGGATTTCGACTACGTGTAG
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