mRNA_H-canaliculatus_F_contig1427.3357.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1427.3357.1
Unique NamemRNA_H-canaliculatus_F_contig1427.3357.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1427.3357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1427contigH-canaliculatus_F_contig1427:20206..21976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.3077538-CDS-H-canaliculatus_F_contig1427:20205..202921622929175.3077538-CDS-H-canaliculatus_F_contig1427:20205..20292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 20206..20292 -
1696845706.8984811-CDS-H-canaliculatus_F_contig1427:20205..202921696845706.8984811-CDS-H-canaliculatus_F_contig1427:20205..20292Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 20206..20292 -
1622929175.3378427-CDS-H-canaliculatus_F_contig1427:21889..219761622929175.3378427-CDS-H-canaliculatus_F_contig1427:21889..21976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 21890..21976 -
1696845706.9083943-CDS-H-canaliculatus_F_contig1427:21889..219761696845706.9083943-CDS-H-canaliculatus_F_contig1427:21889..21976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 21890..21976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1427.3357.1prot_H-canaliculatus_F_contig1427.3357.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1427 20206..21976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1427.3357.1

>prot_H-canaliculatus_F_contig1427.3357.1 ID=prot_H-canaliculatus_F_contig1427.3357.1|Name=mRNA_H-canaliculatus_F_contig1427.3357.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
PHQGTKPSVINPRVYPKAKGAGRTNPQTLESKNRHTNGLSESSKRHRSEA
WNISTQLG
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mRNA from alignment at H-canaliculatus_F_contig1427:20206..21976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1427.3357.1 ID=mRNA_H-canaliculatus_F_contig1427.3357.1|Name=mRNA_H-canaliculatus_F_contig1427.3357.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1771bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1427:20206..21976- (Hapterophycus canaliculatus Oshoro5f female)
CCCCACCAAGGCACGAAACCAAGCGTGATCAACCCCAGGGTCTATCCCAA
GGCTAAGGGTGCTGGCAGAACGAACCCTCAAACCTTGGTCAGTCTCCGTC
AAGTTGTTTTGACGCGTTCTCGTCGAAGTTGAGGTTCAAACTGTCCTCCG
AAAATCTCCGAAATCAAACCTCACACAGCTGGTCCATGCCATCACGCCCC
ATGTCAGCTGCGAGGCCGCCGAGGGCCAGTTTCTTTCGAATTGGTCGTCT
ATGTGATACAAGCCACCGGGAATGCTGTCATTTGACTGTCATGGGATCTC
GTGTGCCTTCACGCACAGGCTGCAAAAGGTGTTGGGAACTTTCGCCGTTC
AGCCGTTGGCATATGGGATATTTTTGCGGCTCCTTTCGTCGAGTCCCACA
CAACAGCGCACGAGATCCTTGAGCAACAGAGGCTCGAATCCTCCCTGGTC
CCAGTTTATTCGAAACCAGCCTCTATATGGTACTCCTCGTTGGATCCGCT
GCTGCTACGGGATCGTCCCACCTTGGAAGCGACGTAAAGGGGGTGGATTG
AGAGGGTGTTGGTTGTCCAAAAAAGATGGCGAAACACCGCATGAAAAGAG
GATTGTAACCCCTCCGTTCCTCGATCGACCACACACCACACCCGGTGGAA
CTCGCTAGGCAGGGGGTTTTCTGCTTGCTACTAGTTTCCTCTACATTACG
ATGCCTTTTGTTTTGCTGTACGGCTTGCTGTTGGGTGGTTTGGCTCGTGA
AGAAATTGTTGCCCGATGTTGAGAGGTGGCAGTACCCTCTGCGTGGCGTG
AAAAGGGGATTGAGAGCGATTAGAAACCTTCTCCGAAGTTCGGAGAAGGG
TCGGAGGAAACCTCCGAAGAACTGGCAGTTCTCCGAATTTCGGACCCGTG
GTTAATAATCGCTCTTAGTCCCGCCCTCTCCGCCTCTCCTCGAAAAATAG
GCAGGAAATAAGTATTACTGCGCCAGTCAGAGAAACACCGTTACAGGAAC
TTCTCGACGTTGTCGCGACCTTCCTCGAATTCATCGTACGCAGGCTGAGT
AACACTTCGGATTGTGAAGTACAGGCAGCGCGGTGATTAATCGTCTCTTT
TCTTGTTGTTTGTGTTATCCAAACCAAAGAATCACCCCTGGAACCGCCCC
GTTTGCTTCAAAAAAATATCTACGAGTTTATTTAGCGCAGCGTCCCTCCG
TCTTTCCCGTGCACAAGTCTCTCTTCATATGTGGGGGTGGAATGTAATTT
TCGTGTTCCAGTCTGAATTTGGAATTGACGACGTCTGCACTGCCCCAAGC
ACCCCCCCGACAAAAACAAAGCCACGTCATGAACATAGAGGCGACGACGG
CCTGTCGCTCTCTCTCCTGTTCGACGGAGACCGCACACACATGTGCGTTT
CAGCGACATAAACTCACGCGGACATGTGCCGGTATGCCCTGAGAGTACAG
CGAAAAGTTCAGCAGTAAGACTGTCTGAGTGTGGTACACTACTGTACTGT
AGTGCTTTTTCGCATGAAAAAAACAAGAAATAAAAAACAGCGATGTGGAT
TCTTATGCAGTCCATCTTCGCTGCAGCCAGCCTCCGCCGCCGTAGATGAT
TTTACGTTGGCTTACCGTTCACCTTCTTCCTTTCCTTCGCTCGGCCGCCG
ATGTTTTCTGCTCGAAAAATGTCCAATACTTCAGGAATCGAAAAATCGCC
ACACCAATGGACTTTCGGAGTCAAGCAAGCGACATCGTAGTGAAGCGTGG
AACATATCTACTCAACTGGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1427:20206..21976-

>mRNA_H-canaliculatus_F_contig1427.3357.1 ID=mRNA_H-canaliculatus_F_contig1427.3357.1|Name=mRNA_H-canaliculatus_F_contig1427.3357.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1427:20206..21976- (Hapterophycus canaliculatus Oshoro5f female)
CCCCACCAAGGCACGAAACCAAGCGTGATCAACCCCAGGGTCTATCCCAA
GGCTAAGGGTGCTGGCAGAACGAACCCTCAAACCTTGCCCCACCAAGGCA
CGAAACCAAGCGTGATCAACCCCAGGGTCTATCCCAAGGCTAAGGGTGCT
GGCAGAACGAACCCTCAAACCTTGGAATCGAAAAATCGCCACACCAATGG
ACTTTCGGAGTCAAGCAAGCGACATCGTAGTGAAGCGTGGAACATATCTA
CTCAACTGGGAGAATCGAAAAATCGCCACACCAATGGACTTTCGGAGTCA
AGCAAGCGACATCGTAGTGAAGCGTGGAACATATCTACTCAACTGGGA
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