mRNA_H-canaliculatus_F_contig14267.3351.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14267.3351.1
Unique NamemRNA_H-canaliculatus_F_contig14267.3351.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Match: D7FTW8_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.790e-18
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWMTWQ 117
            GKREW GDW  KSEKWSDSVRAELGWSEKNDGTFWMTWQ
Sbjct:  487 GKREWIGDWGEKSEKWSDSVRAELGWSEKNDGTFWMTWQ 525
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BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Match: A0A6H5JHG4_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.650e-17
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWMTWQ 117
            GKREW GDW  KSEKWSD VRAELGWSE+NDGTFWMTWQ
Sbjct:  123 GKREWIGDWGEKSEKWSDRVRAELGWSEQNDGTFWMTWQ 161
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BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Match: A0A5B8MKZ2_9CHLO (Calpain-type cysteine proteinase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MKZ2_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 2.030e-10
Identity = 25/39 (64.10%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWMTWQ 117
            G+REW GDWS KS+KW+ ++ A+LG +EKNDGTFWM++Q
Sbjct:  455 GQREWLGDWSDKSDKWTSTLHAKLGRTEKNDGTFWMSYQ 493
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BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Match: A0A7S3FQR2_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FQR2_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 7.110e-10
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWMTW 114
            GKREW GD+S +SEKW++++RA LG + KNDGTFWM W
Sbjct:  474 GKREWNGDFSDESEKWTNALRARLGKTSKNDGTFWMPW 511
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BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Match: A0A2R5G7Y8_9STRA (Calpain-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7Y8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.700e-7
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWMTWQ 117
            G+ EW GDWS KS  W+DS+R+E+GW+ +NDG F++  Q
Sbjct:  360 GRFEWNGDWSDKSSLWTDSLRSEVGWTNENDGIFFIDLQ 398
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BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Match: A0A7S1CGH8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGH8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.720e-7
Identity = 19/39 (48.72%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWMTWQ 117
            G+ EWTG WS  S +W+  ++ E+GW+E +DGTFWM+++
Sbjct:  116 GRIEWTGAWSDNSSRWTTELKREVGWTEADDGTFWMSFE 154
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BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Match: A0A1R2D1Q3_9CILI (Calpain catalytic domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D1Q3_9CILI)

HSP 1 Score: 52.4 bits (124), Expect = 9.480e-7
Identity = 18/39 (46.15%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWMTWQ 117
            G  EWTG+WS  S  W+  ++ +LGW +K+DG+FWM+++
Sbjct:  308 GGTEWTGEWSDSSSLWTPEIKKKLGWEDKDDGSFWMSFE 346
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BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Match: A0A7S3T330_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T330_EMIHU)

HSP 1 Score: 51.2 bits (121), Expect = 2.420e-6
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWM 108
            G+ EW GDWS  S  W+  ++A LGWS+ +DGTFW+
Sbjct:  545 GRTEWRGDWSDASHLWTPRLKARLGWSDADDGTFWI 580
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BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Match: R1C8G2_EMIHU (Calpain catalytic domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C8G2_EMIHU)

HSP 1 Score: 51.2 bits (121), Expect = 2.430e-6
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWM 108
            G+ EW GDWS  S  W+  ++A LGWS+ +DGTFW+
Sbjct:  256 GRTEWRGDWSDASHLWTPRLKARLGWSDADDGTFWI 291
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BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Match: A0A1J4K3M5_9EUKA (Calpain catalytic domain-containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4K3M5_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 3.310e-6
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWM 108
            G  EWTGD+S  S+KW++S++ ELG+   NDG FWM
Sbjct:  272 GNFEWTGDYSDTSDKWTESLKKELGFENSNDGAFWM 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14267.3351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FTW8_ECTSI2.790e-1892.31Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6H5JHG4_9PHAE4.650e-1787.18Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A5B8MKZ2_9CHLO2.030e-1064.10Calpain-type cysteine proteinase n=2 Tax=Chloropic... [more]
A0A7S3FQR2_9CHLO7.110e-1065.79Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A2R5G7Y8_9STRA3.700e-753.85Calpain-like protein n=1 Tax=Hondaea fermentalgian... [more]
A0A7S1CGH8_9STRA3.720e-748.72Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1R2D1Q3_9CILI9.480e-746.15Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A7S3T330_EMIHU2.420e-652.78Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1C8G2_EMIHU2.430e-652.78Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A1J4K3M5_9EUKA3.310e-655.56Calpain catalytic domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14267contigH-canaliculatus_F_contig14267:1947..2063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue2.7e-15
Seed eggNOG ortholog2880.D7FTW8
KEGG koko:K08582
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.083916-CDS-H-canaliculatus_F_contig14267:1946..20631622929175.083916-CDS-H-canaliculatus_F_contig14267:1946..2063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14267 1947..2063 -
1696845706.8091733-CDS-H-canaliculatus_F_contig14267:1946..20631696845706.8091733-CDS-H-canaliculatus_F_contig14267:1946..2063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14267 1947..2063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14267.3351.1prot_H-canaliculatus_F_contig14267.3351.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14267 1947..2063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14267.3351.1

>prot_H-canaliculatus_F_contig14267.3351.1 ID=prot_H-canaliculatus_F_contig14267.3351.1|Name=mRNA_H-canaliculatus_F_contig14267.3351.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=39bp
GKREWTGDWSHKSEKWSDSVRAELGWSEKNDGTFWMTWQ
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mRNA from alignment at H-canaliculatus_F_contig14267:1947..2063-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14267.3351.1 ID=mRNA_H-canaliculatus_F_contig14267.3351.1|Name=mRNA_H-canaliculatus_F_contig14267.3351.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=117bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14267:1947..2063- (Hapterophycus canaliculatus Oshoro5f female)
GGAAAGCGCGAGTGGACCGGCGACTGGTCCCACAAGTCCGAAAAGTGGAG
CGATAGCGTCCGCGCCGAGCTGGGGTGGAGCGAGAAAAACGACGGCACCT
TCTGGATGACGTGGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14267:1947..2063-

>mRNA_H-canaliculatus_F_contig14267.3351.1 ID=mRNA_H-canaliculatus_F_contig14267.3351.1|Name=mRNA_H-canaliculatus_F_contig14267.3351.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=234bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14267:1947..2063- (Hapterophycus canaliculatus Oshoro5f female)
GGAAAGCGCGAGTGGACCGGCGACTGGTCCCACAAGTCCGAAAAGTGGAG
CGATAGCGTCCGCGCCGAGCTGGGGTGGAGCGAGAAAAACGACGGCACCT
TCTGGATGACGTGGCAGGGAAAGCGCGAGTGGACCGGCGACTGGTCCCAC
AAGTCCGAAAAGTGGAGCGATAGCGTCCGCGCCGAGCTGGGGTGGAGCGA
GAAAAACGACGGCACCTTCTGGATGACGTGGCAG
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