mRNA_H-canaliculatus_F_contig14266.3350.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14266.3350.1
Unique NamemRNA_H-canaliculatus_F_contig14266.3350.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14266.3350.1 vs. uniprot
Match: D7FRE9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE9_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.500e-18
Identity = 51/83 (61.45%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  212 MDPNDRRDGEMPPT---IASGPVTSEVWQSVATNTIIGATGGALVGTVLATYRGHSVPFYVASMGTNYAVASLAFFGESLLAR 451
            M+   R D   P T   I+S P  ++ W  VA N+IIGAT GA+ GTVLATYRGHSVPFY ASMGTNYA+ASLAFFG   L R
Sbjct:    1 MEGGKRDDTLFPMTDQGISSQPAATDAWTRVAQNSIIGATSGAVFGTVLATYRGHSVPFYAASMGTNYALASLAFFGTEALIR 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14266.3350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRE9_ECTSI1.500e-1861.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14266contigH-canaliculatus_F_contig14266:23..2456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_002680.1
Exons2
Model size1187
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14266.3350.1prot_H-canaliculatus_F_contig14266.3350.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14266 756..2245 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.9868588-UTR-H-canaliculatus_F_contig14266:22..7551622929174.9868588-UTR-H-canaliculatus_F_contig14266:22..755Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14266 23..755 -
1696845706.760068-UTR-H-canaliculatus_F_contig14266:22..7551696845706.760068-UTR-H-canaliculatus_F_contig14266:22..755Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14266 23..755 -
1622929175.0256622-UTR-H-canaliculatus_F_contig14266:2245..24561622929175.0256622-UTR-H-canaliculatus_F_contig14266:2245..2456Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14266 2246..2456 -
1696845706.7981236-UTR-H-canaliculatus_F_contig14266:2245..24561696845706.7981236-UTR-H-canaliculatus_F_contig14266:2245..2456Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14266 2246..2456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.0025663-CDS-H-canaliculatus_F_contig14266:755..8921622929175.0025663-CDS-H-canaliculatus_F_contig14266:755..892Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14266 756..892 -
1696845706.7758064-CDS-H-canaliculatus_F_contig14266:755..8921696845706.7758064-CDS-H-canaliculatus_F_contig14266:755..892Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14266 756..892 -
1622929175.0128164-CDS-H-canaliculatus_F_contig14266:2139..22451622929175.0128164-CDS-H-canaliculatus_F_contig14266:2139..2245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14266 2140..2245 -
1696845706.786544-CDS-H-canaliculatus_F_contig14266:2139..22451696845706.786544-CDS-H-canaliculatus_F_contig14266:2139..2245Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14266 2140..2245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14266.3350.1

>prot_H-canaliculatus_F_contig14266.3350.1 ID=prot_H-canaliculatus_F_contig14266.3350.1|Name=mRNA_H-canaliculatus_F_contig14266.3350.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=81bp
MDPNDRRDGEMPPTIASGPVTSEVWQSVATNTIIGATGGALVGTVLATYR
GHSVPFYVASMGTNYAVASLAFFGESLLAR*
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mRNA from alignment at H-canaliculatus_F_contig14266:23..2456-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14266.3350.1 ID=mRNA_H-canaliculatus_F_contig14266.3350.1|Name=mRNA_H-canaliculatus_F_contig14266.3350.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2434bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14266:23..2456- (Hapterophycus canaliculatus Oshoro5f female)
GCAGGTTGTCTGATTGACCATCCTGATTCGCTCTCACCTGCTTGGCTTCT
CGATACCTTCCGCAACACCTGTTGCAGAAAGTAGATGCCCCAGTAAATCC
GTTAGCCAAGGAGAAGCGAGGACCACAGCCTCCAGTGGCCTACAGAAGTG
GGAGCAATAAACAGCACTGCGGAGTCTGTCCAGCAGCAGTGAACGACTAC
AAGTAGCCGTCATGGACCCTAACGACAGGCGAGATGGCGAGATGCCTCCG
ACAATCGCGTCTGGACCAGTTACGTCGGAAGTATGGCAGAGCGTCGCGAC
CAATACCATCATCGGGGGTGAGTATTTCGTGCCAAGCAAGTCGTTTGTTT
CGTACGTGTTTTTGCATCGATTGTGTGCTTACCTGCTCACCCTCTTCAAT
CTGCCAGAGCGTGTTGTAGCTACCTCTGCTGGACTCGTGCCATCGACGGC
TGCCATCGATGGCTAGCTGCTGGCTGTTACGACCACCGCTCGGTAACCGT
TTCTACCCGCAAACGTGAACCTGCGGATGAAACCGTGGCTAGCCCACTGT
CGCCGTGCAATCAATGCCCTGCCAGCTGTTCTTACGAATGGGCCATTGCT
GTGTCGGCACCCATCGAGAAGTGCCCACCATGTCCTTGCAGTCCGCCTTC
CTCCGCCTCGGGCGTAGATCCCTGTTGCAAGAGAAGATCCGTACGGGAGA
GTGACCGATGACCCGTATCCATAACTTCCCTACGATGAGCTCCTCTTCAT
CTCAAAGGCGTTGTCTACCAATTGCCACCCAATACTAATTTCCAGCAGCT
TGGGTGTGCAGCTATCAAGGTTTCAGTCTGTAAGCGCGTCATGATCCCCG
CGATGATCGGTCACCATGGAGAGCAGGGTCGCGAATGAGGCCTGTTGCAA
CAGCCATTCATGACGCCAACGCCAAATTTTCTCGCCTAACTTTCGCAAGG
GACACGCCTTCGAAGTATATCAGGTCTAGAGAGCTTAAACAGATAAAAAT
GGACTGCCGCATGAAGTTTGTGCATCCCACGGAGCTATCTTGCCTCCATA
CAACAGCACGCGCAAGTCCCTCGCGAGGATGTGACAACCGCGCTGCCCGC
ATACTGGCATGAGCCAGCCGCAAGCGCTCCACCATCATTGGCAGTTGACG
ACCGGGGTCCGTGGTCGCCCATAGTAAAAACCACCCTCTGTCCCGGCAGC
ACAAAATGCAAGCGCTTGCGTTTTGGTGCAGAGAGGCGGGCAACCGCCAA
AGCGGACGCGCACGCACACTCAGGAAGGAGAGCAGGATGTTTTTCGCGTA
CCCGTAGTCGTGTCTACCTCTACATGTGGCTTCGGTTGGCGCTGCCTGCG
TCGAAAGCGGCCCGACCTAGCAGGACGTGCCGCACACAACGACCCTCTGC
GAATCCCAAATACCCGTGTTCCCCTTGACACCCGATCGGCGCGCCCGCAC
GCTTAGCCTCGCCCCCAGCCCCTCCTCGCCCCACCCACCCCACCCCAACC
GTGACCCACCCCACGTCCGTCTGGATCCCCGGCGCCCCCCACCGTCTCTG
TCCGTGTATGATAGCCACGGGCGGTGCCCTCGTCGGCACCGTGTTGGCGA
CCTACCGCGGCCATTCCGTGCCGTTTTACGTGGCGAGCATGGGGACGAAC
TACGCCGTGGCTTCGCTAGCATTCTTCGGTGAGTCGCTTCTTGCGAGATG
AGAGGTGGTTGTCCCCTGATCCCGGGGGAGGGAGGGTCGATTGGTTCGGT
AGGAGAACGTTTCGATTATGTTCAAGAAGTAAGTGTCGAACAAATAGGAA
GGAAAAACTTCCTTCAAGAAAAGACGATGAGGGCTCGGTGTCCTTGTTGT
GCGAGTCCGCCCACGCTTCTGTGGGCACGTGTTTTGGTCCATTCGTTGCC
ATGCGACATGCGTCCGTCTCGTTTTTGATGGAAGGCCGCTAGACTGACGG
CACTGGAACCGAACATGTTGTAGCTATATTGTCAAATTTGAAGCATTCGG
GCTGGACGGTATTGATACTCGCTCCCGATGTGACATTTGGTTGCGCTCGC
ACGTGACTTGCATCTGTCCACCGTTCACCACTTATCATCGAAAGTCCGCT
GTGTGTTTTAATCCCACGCTGCTTGGCGGCCGTCGGCCTGCTATCAATAA
GCACGCATTTTCGGTGAGGGGCCCAGCGGCTTCGAGACCAAAGTGTCGCA
CCGTAAGGTCTAAATAACTGTTGCTGCATGCTGTCTTGATTATTAAAGAA
AACATAACAACACCGTTAGAACACCTCCTGAGGTACGTCGTGTGAGGCGT
AACACGAGGCTTCTGTTGAGTTCAAAACAGTGAAGGTTCATTGATGGGGA
CAAAAGAATGAACAGGAGAGAGTTTGTGTGTAACTTACCGCAAATGTTAT
GATGGATCATGAACAACTATGGGAAGCGAAACAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14266:23..2456-

>mRNA_H-canaliculatus_F_contig14266.3350.1 ID=mRNA_H-canaliculatus_F_contig14266.3350.1|Name=mRNA_H-canaliculatus_F_contig14266.3350.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14266:23..2456- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACCCTAACGACAGGCGAGATGGCGAGATGCCTCCGACAATCGCGTC
TGGACCAGTTACGTCGGAAGTATGGCAGAGCGTCGCGACCAATACCATCA
TCGGGGATGGACCCTAACGACAGGCGAGATGGCGAGATGCCTCCGACAAT
CGCGTCTGGACCAGTTACGTCGGAAGTATGGCAGAGCGTCGCGACCAATA
CCATCATCGGGGCCACGGGCGGTGCCCTCGTCGGCACCGTGTTGGCGACC
TACCGCGGCCATTCCGTGCCGTTTTACGTGGCGAGCATGGGGACGAACTA
CGCCGTGGCTTCGCTAGCATTCTTCGGTGAGTCGCTTCTTGCGAGATGAC
CACGGGCGGTGCCCTCGTCGGCACCGTGTTGGCGACCTACCGCGGCCATT
CCGTGCCGTTTTACGTGGCGAGCATGGGGACGAACTACGCCGTGGCTTCG
CTAGCATTCTTCGGTGAGTCGCTTCTTGCGAGATGA
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