mRNA_H-canaliculatus_F_contig1426.3347.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1426.3347.1
Unique NamemRNA_H-canaliculatus_F_contig1426.3347.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1426.3347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1426contigH-canaliculatus_F_contig1426:14401..15074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size674
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1426.3347.1prot_H-canaliculatus_F_contig1426.3347.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1426 14603..15058 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.6933627-UTR-H-canaliculatus_F_contig1426:14400..146021622929174.6933627-UTR-H-canaliculatus_F_contig1426:14400..14602Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1426 14401..14602 +
1696845706.6138203-UTR-H-canaliculatus_F_contig1426:14400..146021696845706.6138203-UTR-H-canaliculatus_F_contig1426:14400..14602Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1426 14401..14602 +
1622929174.719352-UTR-H-canaliculatus_F_contig1426:15058..150741622929174.719352-UTR-H-canaliculatus_F_contig1426:15058..15074Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1426 15059..15074 +
1696845706.6329587-UTR-H-canaliculatus_F_contig1426:15058..150741696845706.6329587-UTR-H-canaliculatus_F_contig1426:15058..15074Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1426 15059..15074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.7072742-CDS-H-canaliculatus_F_contig1426:14602..150581622929174.7072742-CDS-H-canaliculatus_F_contig1426:14602..15058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1426 14603..15058 +
1696845706.623683-CDS-H-canaliculatus_F_contig1426:14602..150581696845706.623683-CDS-H-canaliculatus_F_contig1426:14602..15058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1426 14603..15058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1426.3347.1

>prot_H-canaliculatus_F_contig1426.3347.1 ID=prot_H-canaliculatus_F_contig1426.3347.1|Name=mRNA_H-canaliculatus_F_contig1426.3347.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
MISSQLAIFLCPVVKLLRVRFPHPSADHFASCFMSSAAAAIFFFTDSHIG
YFDLACSGRTTPCSLRVLFLSRGLHAGLPPPFQQNRSFSRPRMQSPKRHV
ARTALLKRKTQQLSVFVFLENPTVSELQGRFSTRALVEQARRGVSVMLRT
K*
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mRNA from alignment at H-canaliculatus_F_contig1426:14401..15074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1426.3347.1 ID=mRNA_H-canaliculatus_F_contig1426.3347.1|Name=mRNA_H-canaliculatus_F_contig1426.3347.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=674bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1426:14401..15074+ (Hapterophycus canaliculatus Oshoro5f female)
TTCAACTGCCTATTTCTTCCCTGCTGGGCAAAAACTGTCTAAAAGATTTC
CTTGGGTTCGCCGGTGCACAACAATCTACAAACCTCCGATACTTTTTTTT
AATCCCATCAATTCTGGCCTAGTCTGTCTGCTCCTCTTCAGGTGCACCTT
GGGTGCACTCACACGTTTAGGTACAGGTGCACACGCACATACACACTGCG
GCATGATCTCTTCACAACTGGCGATTTTTCTTTGCCCCGTCGTGAAGTTG
CTAAGGGTGCGATTTCCCCATCCAAGCGCTGATCATTTTGCAAGTTGTTT
CATGTCCTCTGCCGCAGCCGCGATCTTTTTTTTCACGGATAGTCACATCG
GCTATTTCGACCTGGCGTGCTCAGGGCGTACAACGCCGTGCTCACTCCGT
GTACTCTTTCTCTCTCGAGGCCTTCACGCCGGTCTTCCTCCTCCCTTCCA
ACAAAACCGCAGTTTTTCGCGTCCTCGTATGCAGTCGCCAAAGCGCCATG
TAGCTCGCACAGCGTTGCTGAAAAGGAAAACACAACAGTTGAGTGTTTTT
GTTTTTCTCGAAAACCCCACTGTGAGTGAGCTACAGGGGAGGTTTTCCAC
ACGCGCACTAGTTGAACAGGCCAGACGTGGCGTATCTGTGATGCTACGCA
CAAAATGAAGAGCCATGTAACAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1426:14401..15074+

>mRNA_H-canaliculatus_F_contig1426.3347.1 ID=mRNA_H-canaliculatus_F_contig1426.3347.1|Name=mRNA_H-canaliculatus_F_contig1426.3347.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1426:14401..15074+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCTCTTCACAACTGGCGATTTTTCTTTGCCCCGTCGTGAAGTTGCT
AAGGGTGCGATTTCCCCATCCAAGCGCTGATCATTTTGCAAGTTGTTTCA
TGTCCTCTGCCGCAGCCGCGATCTTTTTTTTCACGGATAGTCACATCGGC
TATTTCGACCTGGCGTGCTCAGGGCGTACAACGCCGTGCTCACTCCGTGT
ACTCTTTCTCTCTCGAGGCCTTCACGCCGGTCTTCCTCCTCCCTTCCAAC
AAAACCGCAGTTTTTCGCGTCCTCGTATGCAGTCGCCAAAGCGCCATGTA
GCTCGCACAGCGTTGCTGAAAAGGAAAACACAACAGTTGAGTGTTTTTGT
TTTTCTCGAAAACCCCACTGTGAGTGAGCTACAGGGGAGGTTTTCCACAC
GCGCACTAGTTGAACAGGCCAGACGTGGCGTATCTGTGATGCTACGCACA
AAATGAATGATCTCTTCACAACTGGCGATTTTTCTTTGCCCCGTCGTGAA
GTTGCTAAGGGTGCGATTTCCCCATCCAAGCGCTGATCATTTTGCAAGTT
GTTTCATGTCCTCTGCCGCAGCCGCGATCTTTTTTTTCACGGATAGTCAC
ATCGGCTATTTCGACCTGGCGTGCTCAGGGCGTACAACGCCGTGCTCACT
CCGTGTACTCTTTCTCTCTCGAGGCCTTCACGCCGGTCTTCCTCCTCCCT
TCCAACAAAACCGCAGTTTTTCGCGTCCTCGTATGCAGTCGCCAAAGCGC
CATGTAGCTCGCACAGCGTTGCTGAAAAGGAAAACACAACAGTTGAGTGT
TTTTGTTTTTCTCGAAAACCCCACTGTGAGTGAGCTACAGGGGAGGTTTT
CCACACGCGCACTAGTTGAACAGGCCAGACGTGGCGTATCTGTGATGCTA
CGCACAAAATGA
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