mRNA_H-canaliculatus_F_contig1424.3332.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1424.3332.1
Unique NamemRNA_H-canaliculatus_F_contig1424.3332.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1424.3332.1 vs. uniprot
Match: D7G8K2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K2_ECTSI)

HSP 1 Score: 401 bits (1031), Expect = 5.690e-136
Identity = 255/341 (74.78%), Postives = 289/341 (84.75%), Query Frame = 1 
Query:    1 MSRLQTMLQQKLVHKYGTKRSLNSKLNQEIGEEKKEGGVGDAAAGGNGEDRLGEGQLPPSIARAWRTFDVAKQIEYESKEQQKAEKARVQK---KMQLVVHRARQXXXXXXXXXXXXXXXXXXERRLAEFHMEQEAIKQRAADXXXXXXXXXXQQIKRLQAEKEADRQARLAKEMHDIELCKAQLQGEVDEMERKRKIEKDRLAAIREENGKQREIRAQKQRESDEADALLLKEHRRRIDAEEQARAAKLHERMKRYEEIGNFWSERRAGNTQADVEHREAQQTLKAARRKEEATLERERKESEARRAAGRIMAAENQKVIQEKSALSAKKHKEDMEFAQR 1014
            MSRL+TMLQQKLV KYG+KR++NS+LN EI EE  E   G +A G    D +G+G LPPSIARAWRTFDVAKQIEYE+KEQQK+EKA+ QK   + +L VHRA+Q       XXXXXXXXXXXER+LAEFHMEQEAIK+RA+D        XXQQ+KRLQAEKE +RQARL +EM DIE CKA+LQGEVDE +RKRK EKDRLAAI+ EN KQREIR Q+QRESD ADALLLKEHR+R+DAEEQARAAKL +RMKRYE+IGNFWSER+AGNT+A+VE REAQQTLKAARRKEEATLERERKE EARR AG +MAAENQKVIQEK+AL+AKKHKEDMEFAQR
Sbjct:    1 MSRLKTMLQQKLVQKYGSKRNVNSRLNLEIEEEDNENSPGGSAGG---VDDVGDGLLPPSIARAWRTFDVAKQIEYETKEQQKSEKAKQQKIIFREELEVHRAKQAEKKAVEXXXXXXXXXXXERKLAEFHMEQEAIKKRASDKHAEEKALXXQQVKRLQAEKEIERQARLDEEMLDIERCKAKLQGEVDEADRKRKSEKDRLAAIQAENAKQREIREQRQRESDAADALLLKEHRQRMDAEEQARAAKLKQRMKRYEDIGNFWSERQAGNTEAEVELREAQQTLKAARRKEEATLERERKEREARRIAGMVMAAENQKVIQEKNALNAKKHKEDMEFAQR 338
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1424.3332.1 vs. uniprot
Match: A0A7S1TW05_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TW05_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.820e-21
Identity = 81/257 (31.52%), Postives = 143/257 (55.64%), Query Frame = 1 
Query:  451 QQIKRLQAEKEADRQARLAKEMHDIELCKAQLQGEVDEMERKRKIEKDRLAAIREENGKQREIRAQKQRESDEADALLLKEHRRRIDAEEQARAAKLHERMKRYEEIGNFWSERRAGNTQADVEHREAQQTLKAARRKEEATLERERKESEARRAAGRIMAAENQKVIQEKSALSAKKHKEDMEFAQRFISDSEAFRREEQDKIAKKRIAMAKYRKDLETQVQETRARRIHEDMNDTEYRMNSDLVKKLEADKDLAS 1221
            QQIK   + ++A+   R A+EM +I  CK  +Q   DE  RKR+ E +RL  I  EN  +   RA+  +E    D  L++E++ +++ E+  R     +RM+RYE  G  W+++ AG  Q + E R  +  L+ A++KE+A +ERER++ E  R     +AA N+ +++EK     ++H   M +A  F  + E +   E+ + A +R    K+   L+ Q++  R RR   +M+D E  +N ++++K++ D ++ S
Sbjct:  329 QQIKDTNSRRKAEFDKRRAEEMEEIRRCKDAIQFTRDEEARKRREEHERLKKILIENQIENAKRAEVAKEEAAEDVRLMEEYKAKLEREDLERKRAFEKRMERYEAYGRLWADKGAGKKQREEELRIERVILREAKKKEDADIERERRDKEYLRTTALSIAASNKNLMEEKRRRMKEEHDASMIYAMSFRGEGEQYVAAERARAAARREEAKKHAAFLKEQIEGDRQRRQAVEMSDAERSVNREVLRKVKEDPEMVS 585
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1424.3332.1 vs. uniprot
Match: A0A7S2C158_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C158_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.070e-17
Identity = 82/255 (32.16%), Postives = 144/255 (56.47%), Query Frame = 1 
Query:  454 QIKRLQAEKEADRQARLAKEMHDIELCKAQLQGEVDEMERKRKI-EKDRLAAIREENGKQREIRAQKQRESDEADALLLKEHRRRIDAEEQARAAKLHERMKRYEEIGNFWSERRAGNTQADVEHREAQQTLKAARRKEEATLERERKESEARRAAGRIMAAENQKVIQEKSALSAKKHKEDMEFAQRFISDSEAFRREEQDKIAKKRIAMAKYRKDLETQVQETRARRIHED---MNDTEYRMNSDLVKKLEAD 1206
            QI   Q  K+ +  AR A E+ ++++ + ++Q + ++M   +KI EK+RL  IR EN K+R +R ++  E    D  L++E++R+++ EE  RA     R+ + E  G+ W+E  AG  Q DVE R     L+ A +K+ A  ERER++  A +   ++MA  N+ +++ K      +  E+M++AQ+F +  E ++REE ++   KR AM  ++  L  Q+    AR+   D   M+ +E ++N+ L+ KL  D
Sbjct:  257 QISERQQRKKTELAARRAAEIQELDIVRQEIQRQ-EQMAIDKKIKEKERLKGIRLENEKERLVRKKRAEEEAAEDQRLMEEYKRKLEQEEVDRANAFKRRLDKLEATGSKWAEEGAGKEQMDVEKRLEAMVLREAAKKDAADEERERRDKAALKYNAKLMAETNKSLMESKVRAGTAQQAEEMKYAQQFRTAGEDYQREEINRKIAKRKAMQAHQAQLMEQI----ARKKAVDKFAMSGSERKVNAALLNKLTND 506
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1424.3332.1 vs. uniprot
Match: A0A836CRB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRB1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.200e-17
Identity = 67/181 (37.02%), Postives = 112/181 (61.88%), Query Frame = 1 
Query:  673 DALLLKEHRRRIDAEEQARAAKLHERMKRYEEIGNFWSERRAGNTQ---ADVEHREAQQTLKAARRKEEATLERERKESEARRAAGRIMAAENQKVIQEKSALSAKKHKEDMEFAQRFISDSEAFRREEQDKIAKKRIAMAKYRKDLETQVQETRARRIHEDMNDTEYRMNSDLVKKLEAD 1206
            DA L++E+R R+D EE  RA KL ERM++YE+IG +W +  +GN +   A+++  EA    + A R   A  ERER++ E RR      A +N++ +QE++  S ++ + + + A+   +D+EAF++ E+++I KKR+AM KYR +L+              M +TE  +NSD+VK+++AD
Sbjct:  569 DARLMEEYRLRLDREEAERARKLKERMQKYEKIGAYWQD--SGNVREQAAELDRLEANIQEEFAARAH-AESERERRDWEKRRIGCMAAALDNRRTVQERNRRSEEEAERERQLAETARADAEAFKQAEKERIEKKRLAMTKYRAELDKXXXXXXXXXXXXXMTETEALLNSDIVKRIQAD 746
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1424.3332.1 vs. uniprot
Match: A0A7S2WFB5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFB5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.080e-15
Identity = 69/231 (29.87%), Postives = 127/231 (54.98%), Query Frame = 1 
Query:  532 CKAQLQGEVDEMERKRKIEKDRLAAIREENGKQREIRAQKQRESDEADALLLKEHRRRIDAEEQARAAKLHERMKRYEEIGNFWSERRAGNTQADVEHREAQQTLKAARRKEEATLERERKESEARRAAGRIMAAENQKVIQEKSALSAKKHKEDMEFAQRFISDSEAFRREEQDKIAKKRIAMAKYRKDLETQVQETRARR---IHEDMNDTEYRMNSDLVKKLEADKDL 1215
            C+ ++  E  +++  +  E +R+  ++ +N K+R+IR Q++++    D  L++ ++ +++ EE  RA     RM+R +  G  W+E  AG  Q + E +  QQ L  A RKE+A LERER++ +A +   R+MA  N+K+I+ K     +K +ED  FA++   D + F   E  K  +K + M +++  L  Q+          +   M+D E ++N +L+KKL  + +L
Sbjct:  264 CQEEIIAEQRKVQAAKDAEAERMRQVKLDNLKERQIRMQRKQQEALEDQRLMEAYKAKLEREEVERANAFERRMERLQASGQKWAEEGAGKEQLEFEQKLEQQILGEALRKEQADLERERRDKQAIKDKQRLMAESNRKLIEAKKLRMQRKQQEDQSFAEKSQRDQKEFFESEARKKKEKALLMNQHQIALSQQIHHRSNNPTDPMKASMSDHERKINGELLKKLHQEPEL 494
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1424.3332.1 vs. uniprot
Match: A0A7S1TWB0_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWB0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.440e-15
Identity = 63/212 (29.72%), Postives = 118/212 (55.66%), Query Frame = 1 
Query:  586 EKDRLAAIREENGKQREIRAQKQRESDEADALLLKEHRRRIDAEEQARAAKLHERMKRYEEIGNFWSERRAGNTQADVEHREAQQTLKAARRKEEATLERERKESEARRAAGRIMAAENQKVIQEKSALSAKKHKEDMEFAQRFISDSEAFRREEQDKIAKKRIAMAKYRKDLETQVQETRARRIHEDMNDTEYRMNSDLVKKLEADKDLAS 1221
            E++RL  I  EN  +   RA+  +E    D  L++E++ +++ E+  R     +RM+RYE  G  W+++ AG  Q + E R  +  L+ A++KE+A +ERER++ E  R     +AA N+ +++EK     ++H   M +A  F  + E +   E+ + A +R    K+   L+ Q++  R RR   +M+D E  +N ++++K++ D ++ S
Sbjct:   19 ERERLKKILIENQIENAKRAEVAKEEAAEDVRLMEEYKAKLEREDLERKRAFEKRMERYEAYGRLWADKGAGKKQREEELRIERVILREAKKKEDADIERERRDKEYLRTTALSIAASNKNLMEEKRRRMKEEHDASMIYAMSFRGEGEQYVAAERARAAARREEAKKHAAFLKEQIEGDRQRRQAVEMSDAERSVNREVLRKVKEDPEMVS 230
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1424.3332.1 vs. uniprot
Match: D8LLG7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG7_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.270e-13
Identity = 66/186 (35.48%), Postives = 107/186 (57.53%), Query Frame = 1 
Query:  667 EADALLLKEHRRRIDAEEQARAAKLHERMKRYEEIGNFWSERRAGNTQADVEHREAQQTLKAARRKEEATLERERKESEARRAAGRIMAAENQKVIQEKSALSAKKHKEDMEFAQRFISDSE---AFRREEQDKIAKKRIAMAKYRKDLETQVQETRARRIHEDMNDTEYRMNSDLVKKLEADKDL 1215
            E D  L+KE+R R+D E+  R A  ++R++RYE IGN W+E  AG  Q D +  E ++ L  A  KE+   +RE ++ EA R        +N++++ +K+A      K + E+AQ+F    E   A   E + ++ +++ A A+    LE Q++ETRA      M DTE +MN +L++KL+ D+DL
Sbjct:  185 EEDKRLMKEYRERLDREQAERTAAHNKRLQRYEMIGNQWAESGAGKRQHDKDIAEERRILAEAAIKEKIDEDREIRDKEALRVDRLRCLEDNKRLMGDKAARKKADEKLEAEYAQQFRVQGEMHVAKGLERKREMVREKKAYARM---LEDQIRETRAALRTVQMTDTERKMNGELLRKLQGDRDL 367
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1424.3332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G8K2_ECTSI5.690e-13674.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1TW05_9STRA2.820e-2131.52Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2C158_9STRA4.070e-1732.16Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836CRB1_9STRA4.200e-1737.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WFB5_9STRA3.080e-1529.87Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S1TWB0_9STRA3.440e-1529.72Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
D8LLG7_ECTSI3.270e-1335.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1424contigH-canaliculatus_F_contig1424:3104..9543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003310.1
Exons13
Model size1221
Cds size1221
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.4982874-CDS-H-canaliculatus_F_contig1424:3103..31621622929173.4982874-CDS-H-canaliculatus_F_contig1424:3103..3162Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 3104..3162 +
1696845706.0047293-CDS-H-canaliculatus_F_contig1424:3103..31621696845706.0047293-CDS-H-canaliculatus_F_contig1424:3103..3162Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 3104..3162 +
1622929173.5123124-CDS-H-canaliculatus_F_contig1424:3486..35261622929173.5123124-CDS-H-canaliculatus_F_contig1424:3486..3526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 3487..3526 +
1696845706.0172377-CDS-H-canaliculatus_F_contig1424:3486..35261696845706.0172377-CDS-H-canaliculatus_F_contig1424:3486..3526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 3487..3526 +
1622929173.5262146-CDS-H-canaliculatus_F_contig1424:3985..41681622929173.5262146-CDS-H-canaliculatus_F_contig1424:3985..4168Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 3986..4168 +
1696845706.02814-CDS-H-canaliculatus_F_contig1424:3985..41681696845706.02814-CDS-H-canaliculatus_F_contig1424:3985..4168Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 3986..4168 +
1622929173.5367184-CDS-H-canaliculatus_F_contig1424:4530..45891622929173.5367184-CDS-H-canaliculatus_F_contig1424:4530..4589Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 4531..4589 +
1696845706.0381732-CDS-H-canaliculatus_F_contig1424:4530..45891696845706.0381732-CDS-H-canaliculatus_F_contig1424:4530..4589Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 4531..4589 +
1622929173.5481787-CDS-H-canaliculatus_F_contig1424:4875..50051622929173.5481787-CDS-H-canaliculatus_F_contig1424:4875..5005Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 4876..5005 +
1696845706.0496597-CDS-H-canaliculatus_F_contig1424:4875..50051696845706.0496597-CDS-H-canaliculatus_F_contig1424:4875..5005Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 4876..5005 +
1622929173.5625575-CDS-H-canaliculatus_F_contig1424:5500..55841622929173.5625575-CDS-H-canaliculatus_F_contig1424:5500..5584Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 5501..5584 +
1696845706.0591197-CDS-H-canaliculatus_F_contig1424:5500..55841696845706.0591197-CDS-H-canaliculatus_F_contig1424:5500..5584Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 5501..5584 +
1622929173.5748987-CDS-H-canaliculatus_F_contig1424:5699..58001622929173.5748987-CDS-H-canaliculatus_F_contig1424:5699..5800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 5700..5800 +
1696845706.069974-CDS-H-canaliculatus_F_contig1424:5699..58001696845706.069974-CDS-H-canaliculatus_F_contig1424:5699..5800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 5700..5800 +
1622929173.586347-CDS-H-canaliculatus_F_contig1424:6128..62161622929173.586347-CDS-H-canaliculatus_F_contig1424:6128..6216Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 6129..6216 +
1696845706.079206-CDS-H-canaliculatus_F_contig1424:6128..62161696845706.079206-CDS-H-canaliculatus_F_contig1424:6128..6216Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 6129..6216 +
1622929173.5978587-CDS-H-canaliculatus_F_contig1424:6593..67091622929173.5978587-CDS-H-canaliculatus_F_contig1424:6593..6709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 6594..6709 +
1696845706.0883873-CDS-H-canaliculatus_F_contig1424:6593..67091696845706.0883873-CDS-H-canaliculatus_F_contig1424:6593..6709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 6594..6709 +
1622929173.6117685-CDS-H-canaliculatus_F_contig1424:7364..74521622929173.6117685-CDS-H-canaliculatus_F_contig1424:7364..7452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 7365..7452 +
1696845706.0981104-CDS-H-canaliculatus_F_contig1424:7364..74521696845706.0981104-CDS-H-canaliculatus_F_contig1424:7364..7452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 7365..7452 +
1622929173.6239517-CDS-H-canaliculatus_F_contig1424:8079..81441622929173.6239517-CDS-H-canaliculatus_F_contig1424:8079..8144Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 8080..8144 +
1696845706.1105874-CDS-H-canaliculatus_F_contig1424:8079..81441696845706.1105874-CDS-H-canaliculatus_F_contig1424:8079..8144Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 8080..8144 +
1622929173.635581-CDS-H-canaliculatus_F_contig1424:8872..89471622929173.635581-CDS-H-canaliculatus_F_contig1424:8872..8947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 8873..8947 +
1696845706.1213534-CDS-H-canaliculatus_F_contig1424:8872..89471696845706.1213534-CDS-H-canaliculatus_F_contig1424:8872..8947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 8873..8947 +
1622929173.6457644-CDS-H-canaliculatus_F_contig1424:9410..95431622929173.6457644-CDS-H-canaliculatus_F_contig1424:9410..9543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 9411..9543 +
1696845706.1309626-CDS-H-canaliculatus_F_contig1424:9410..95431696845706.1309626-CDS-H-canaliculatus_F_contig1424:9410..9543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1424 9411..9543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1424.3332.1prot_H-canaliculatus_F_contig1424.3332.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1424 3104..9543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1424.3332.1

>prot_H-canaliculatus_F_contig1424.3332.1 ID=prot_H-canaliculatus_F_contig1424.3332.1|Name=mRNA_H-canaliculatus_F_contig1424.3332.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=407bp
MSRLQTMLQQKLVHKYGTKRSLNSKLNQEIGEEKKEGGVGDAAAGGNGED
RLGEGQLPPSIARAWRTFDVAKQIEYESKEQQKAEKARVQKKMQLVVHRA
RQEERKREEEEERRKHMEEQERRLAEFHMEQEAIKQRAADKHAEEKALRE
QQIKRLQAEKEADRQARLAKEMHDIELCKAQLQGEVDEMERKRKIEKDRL
AAIREENGKQREIRAQKQRESDEADALLLKEHRRRIDAEEQARAAKLHER
MKRYEEIGNFWSERRAGNTQADVEHREAQQTLKAARRKEEATLERERKES
EARRAAGRIMAAENQKVIQEKSALSAKKHKEDMEFAQRFISDSEAFRREE
QDKIAKKRIAMAKYRKDLETQVQETRARRIHEDMNDTEYRMNSDLVKKLE
ADKDLAS
back to top

mRNA from alignment at H-canaliculatus_F_contig1424:3104..9543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1424.3332.1 ID=mRNA_H-canaliculatus_F_contig1424.3332.1|Name=mRNA_H-canaliculatus_F_contig1424.3332.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6440bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1424:3104..9543+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCGCTTGCAGACCATGCTCCAGCAGAAGCTCGTCCACAAGTACGG
CACGAAGAGGTAAGAACCGGGGTTTGTGAAAATGTCACAAACGAAAGGTA
TGACTGGGTAGCGCAGTGGACAAACTGCCTACTTAACACCAAACACAAGT
ACTTGTACGGATATGGCGAAAAACAGAAGGGCTGCACAAGCGTTTTTGAC
CGTATGCAAAGAGTGTGGGCTGGTCGTGCAGCAGGGCTGCACACGAGTTG
CGCGGACTGCTGCGCAGAACCAAACACATACCTACACTTTTCTTTTTTTT
TCTTATATGATCGAACAATATCGCCGCTGCCTTTTGACAACTCATCAACA
AATAATCGGGAAACCGGCGAACCCAAACACCAGGAGCCTCAACTCTAAAC
TGAACCAAGAAATCGGGGAAGAAGTAAGCGCATTCACGGCGCGGATCAGA
CGGCAGCCCACGGATGACGAGTTTCTAGAGCTGGAAAACTCGATTAGAGA
GCTTCGCGCCAAGTATCTCAAGGGCAGCGGCGATGGTGGCGGATCCGCGA
CGGACAGCAAAGGCAGCGGTAGACGTGGCAGCGTATCGTCCGGGGGTGAC
GGGGGGTCGAGGGACAGCTCAAAGAAAGCCAGGGTAAGCTCGGAAAATAT
ACGGACACAAGATTGAGGGAAAGGCATGCATGAAATGTGTGCGAGTGCAA
CTCGTGTAGAGCATCGTTCGACATCTTTGTGCACAACCGACCAGTCTGAT
ATCAATATCCCTTGTACCCATGCGCCCGTCCGCCCGTCTGACGCCTGCTT
GCCCGTATGCCTGTCCATCACCACCGGGCCATGAATGCTTCGTCGCCTTC
TCCTTCTGCTTGATGGTTTTCCACAGGCGCAGAAAAAAGAAGGCGGCGTA
GGCGATGCTGCTGCGGGGGGCAACGGTGAAGATCGTCTTGGCGAGGGCCA
GCTGCCACCTTCCATCGCCCGCGCCTGGCGCACATTCGACGTCGCCAAAC
AGATCGAATATGAGAGCAAGGAGCAGCAAAAGGCGGAGAAAGCCAGGGTG
CAAAAGAAGATGCAAGTGCTCTTGCCGCAAAGCACCAAACAGAAAACCAC
TTCAATGGGGACAGTTGGCGCATGTAGTATTTGTGCGGCTACATACAGGT
CTCGAGAGGCCGCGATCGTATTCCGTTTGGCAACACTGCTTTATCGCGGA
GTCTGGACAAGTCGCGATGTGTTTTCGGTATGGTCGCAGTCTGTTATCGT
CTAGGATCTGTTTTCGTGAAAAACCATCGTGGCGCAGTGACTCGTGATAT
ATCGACCACACCACCTCCAACAAATATTTGCTTACGACGTGCGACACAAA
CTAATGTCCTGCTGCTGTCGTGCTTGCATCTTCCATTATCTCCTTGCTCC
CCGTTCTTCGCTAGATTCCGGGACGAGTTAGTGGTACACAGGGCGCGGCA
GGAAGAGAGGAAACGTGAGGAAGAAGAAGAGAGACGGTGAGACTAAGAAA
TATAGATATGGTGAGAGAGAGAGAGAGAGAGGGGGAGGGAGGGAGGGAGG
GAGAAATATCATACCACAAGAAACAAGTTGTAGGGTACTTTAATGTGTAT
ACTCATGTTGCAATTCTGTTACTACGATCGCTGCCCCTATCACCTATTTC
TGCTGCTTCTGCTGTTGCTCAAACCGGGGACGTGATGCCAGCGTTCTGTG
TCACACTCTCACAAAGCGCGCGACCACGAAAGCAAACAAGCGATTACCCA
AACATGGATCAAACACCGAAAGGAAGCACATGGAAGAGCAAGAGAGGCGG
CTTGCAGAGTTTCACATGGAGCAGGAGGCGATCAAGCAACGCGCGGCCGA
CAAGCACGCCGAGGAAAAGGCCCTCCGCGAGCAACAGATTAAGCGCCTGC
AGGTGCTAGCAAGTGTGCGTGTGAACGTGTGCCCATGCGTTCTAAGACCT
TTTCCGTACGCCGCTTGGGTGTTCGAGGGAGAATTGCTTTCGAAGTTGAC
GTTCAACATGTCGTACAAAACACTGCATTTCCGCTCCTCAAGCTGGATCG
TAGTATCTCGTCCTGGATGCTGTCGGGAATGTTGGAGGGGCGGTCTTCTG
TGGTGGGGAAGATTAAGGGTAAGGACGAATTTACTAATGTGCCTACAGTC
TTCCCGACGAGATGGCATACTACAATTTATCGAGCGGCCGCAGACAACAT
CGGGTGGCGGTCGGTCGTACTTCATCCTGGCGTGTCAGCAACCATCGTGG
TCTCGTCCCTTGCTTCTACGGAGACTGCTGCGCCGTCGCTCTCCCTCCTG
AACCCGTAGATCGATGCAGGGTGGGGCGAATAGCTAATCGCTCCCCCCGT
ACCCCCCCTGCCTCCGATCCCCCGGCTCACTCTTTGGTCACCCGAAGGCC
GAGAAAGAGGCTGACCGGCAAGCCCGTCTGGCAAAGGAGATGCACGACAT
AGAGCTATGCAAGGCACAGCTACAGGGCGAGGTGTGTGCGCATCTTCCTT
CAAACGAAAGGTTGGAGAGTCCATAGAAAGGGAGTCTTTCCGGAAACTCG
GTTTTCCTCAAAACGCAATACTATTGCGCGTGTCACAAACATCCAGGTGG
ACGAAATGGAGCGGAAAAGAAAGATTGAAAAGGATCGATTGGCCGCCATT
CGCGAGGAGAACGGCAAACAGAGGGAGATCCGCGCTCAAAAGCAGAGGTG
AAGGGTCGTTTGCAATTCGATACACGCATCGAACGGACGCGCGGATAGAA
AAGGGTCGTCTCAACAGGTTTTTGCAATGTATCACGAACAAGGGGTATGG
CGTAAGACGGGGACAAGTACGACAGATGGGCGGGTGGCAGTGGAACTGAT
ATTTACCCATGTGAGCTGCTGCTCGAGACGTAATAGCTGGCCAAGTCGAG
TCCGGGCTACTGATAACGTTTTGCGGGTGCGAAAACTGAAAGTGTTATTA
ATATTTCCCCAGCGCCAACGCCCATTGAACCCCGGTGAAGTTTTGTGCTG
AAGCTACGTATTTTGCTTCCTCCAGGGAGTCCGACGAGGCCGACGCTCTG
CTGCTGAAGGAGCACCGCCGGAGGATAGATGCAGAAGAGCAGGCGCGCGC
AGCCAAACTCCATGTGAGATTGTGCAAGAATCGGAACATTCACATCTTTC
GATGATAAGACAAATGAATGCCCGGCCATGCCAGGTACAGGCCCGGGTGG
CGGGGGGAGAGGGGGGGGGGGGATCAACGGCAATGCATGAAAGTGAGACG
AATGAGCTACTGGTTTTGTTGACCCTTCATGTTGACCGAAGCGCCAAAGC
ATCGTCCATTAACTAACCTCGTGGTTGACTATGTCAGTGAAAAGCCGAAC
ACTCACCGACCGCCTCTTGTTCTATAAATAACGAGCAGCAGACACAGCCA
GACAGATATCCAGCCTACAACATGCCCCTCCTCTTGCCGCGTTCGCGTTT
TGCTGATGCCGGCGTCATCGTTGCTGTGCCGATTGTGCAGGAACGCATGA
AGCGGTACGAGGAGATCGGGAACTTTTGGAGCGAACGAAGAGCCGGCAAT
ACGCAGGCCGACGTCGAGCACCGTGAAGCGCAGCAGACCCTCAAGGCTGC
ACGGAGGTAACGAGACCTCAGTGTACCAGTTTGGCCCGAACTGGTTGACC
GACTAATGAATGAACGATCCAAAGACGGACGGAGAATAGTTTCGGCCGTG
AGTGCTCTTCTACCGATAGATAAGTGTCGAACGTAGTCCCATAATTTACC
CTGCAGACTCGTTATTGGTTGGCGTTATCGCCCACCACCCGGCTAAAACA
AGGGAATAATGGTCTACAAGGTATTCGGTATTGCTCTTTGCCAAGGCAAG
CCAAGAAGACTAGTTGTACATGGTCTGGAGACTTCACCCTCCGTTTGTTG
AGAAACCTAGCTCCAAGAGCTGACGATCGAACCAAATAATTTTTTGCCTC
TGTCCACCTCCTTGGCACGTAGCAATATGTGTCCTAAAGTTCAAGGTGTG
TATTTCGGCTTCACTTTTTTCGAACGCCGAAGGGGCTAACCCCAAGCCTG
TTGCCATGGGAGGTAGGTGCCACCGCATGCTGCTGCTGGTGTTTCCAAAT
GGCTCGAGAAAAATAGGACGCGGCGTATGCGCACAACGCCTGCATATGGC
ACCATGACAAACCGGAAACACCTGAGAATGAGTCGCTTCGTGGCAAACGT
GAGAACTGCCCGCAAAATATTACCGTCCTGTTTCTCCCACCTGTCGCACG
AAAACCTACAGGAAAGAGGAGGCGACCCTGGAGCGCGAGAGAAAGGAGAG
TGAAGCAAGGCGTGCCGCCGGGAGAATCATGGCCGCAGAAAATCAAAAGG
TATACAAGGACTTGCCAACGATAAAGCCGTACACCTAGGAGTGGTGCGGG
AGATTCACACGGACAGGTGGACGGAAGCTCCCCGCGGCCAGAGGTGGAAT
GCCTCAAGCACCATGTCTGTCCAAATCTCGACCTTGCAACCGCCTCAAGG
GATTTTTGCAACATGCAAGGTGAAGTAAGGATCTTTCAGGCGCCCCACCT
CTGGCACAGGGGGAGCTCCCGTTCATAAGTGACACTTTTCGATCCTCCGT
CCTCGGGCATGGCTTCGTTCTTTACGGCTGCGGATGTCTCATCTTCTTGC
ACGCGCGATGCAGAGTGTCCCGTGTCGTTCAAGTTTCAACTCGTCTTTCG
CGCACTTATGCACTTCCTTGCCTATCTAACAAAAGGAAAAGACGCTTACC
CCGGTGGCACTACATGCCTTGAAGCGGTCCATTTCGCTGAAAATGCTTCC
TGAAAGGCCCTGTCCCTCCCGGGCATTGATGTTTTCTTGTGCCCTCACTA
CTTGTCCGCTTGGCTTCCGAAGACCTACCACATCCGTTCCAAAGCCTAGC
GACTTTATTATGCCGCTCTAGCTGCTGCATAGTCAAAACGAAACGCGAAC
CACTGCAAAACTGATTTGAAATACAGGTTATCCAGGAGAAGAGCGCCCTG
AGCGCAAAAAAGCATAAGGAGGACATGGAATTTGCTCAAAGGTGGGTAGG
TAGACATTCACGTCTTCCTGGGCTAGATGAAGTTGAAACAAATCTGTTTC
GTTGACAGGAAGGCGATGATTTCTCAGGGAGGGAGGTCCCGCCAAGCTGC
TGGCCCGGAGCGACGTCTCCCTTTACCTTGTGCCTTCGACTTGTACCTGG
CACAGGCGGCACATGCGGTTTATGGACTTACTTGCACTTGAGCTATCTTT
ACTCATCGCCTCTCCCGCGCCCTCCGACATGAGCACGGTCAGAAACATGC
AAGACAACTTAGGATGCCCTGTTGTTTGATCCGCTCGTAGGTCGTGCATT
ACGGGCGTGCACGACGTACGAAATGTACGCGGTGCAAGCGTTCGAATGCT
GTGCAGGTTTTCTGCCTCCTGCAACCCACACGTCCAGCATTGTCCGTGTT
CATCTTCCTTATGAGATGCCGTTCTCTCTTGGGTCATTTGCACAGATGTA
ACATATTCGTTTCTTGTCTAGAATCGTATCGGCGTCATTCGTTACGTGCG
CCTGGCTCTGCAATCCTGCTTGAGTTCTTTGTCTTTTCATCATGATCGAG
GGATTATTTTCTCATGTTTGTTCCTTGAAGAAGACGATTTCCTCGTTGTT
ACAAGTTGGGCATGGAGGGCTGACGCATGCTCGGTATTACGTGTGGAGTT
TGCATTTTGCTCAATGGAAGAGGTTGACGACGACCTCTGACTAACAAATG
CATTTCCTATTTTCTGAAGGTTTATTAGCGACTCGGAGGCGTTTCGACGG
GAGGAGCAAGACAAGATTGCCAAGAAGAGGATCGCCATGGCCAAGTGCGT
AAAAGGATTTCAACATAAGTGTTGTTTTTGTGCGTGTACTTGCCCTGGCA
GGCTCTCGAGTGCCTCGTTTGGGTGGATTAAGCGCAAAAGCACGGAGTTC
TGTACAAAGCGTTTCTCGAGACAGCTCCGGAGGGCATTAAAGATGAAAAC
AGGGAAGAAACGCAGGTATCCGATTCCAGCTTGAAGCATAAAGAGTAGTT
TGTGCAAGTGGCGCCTTTCGTGCCTCAAGAGGGCGAGAACGAGATCACGC
GCGCACGGTTGTAGGATTAAGAAACATCGCAAGCTTCTTGATCAAGAGAA
GCATCAAGGAGGTTCATCACTTCAAGTTGAGCAACTTCCGCTTCATGGAA
GGGTCGTCTAAAATCTCGTTGACGCCCCTTCCGACGAAACGCTATCATCA
CCACAAGCACCACCAACAAAGCACCACCAATAAGGGCCACTTCACCATCC
CTTTCAGGTACCGCAAAGATCTCGAGACGCAAGTGCAAGAGACCAGGGCC
CGGCGCATCCACGAGGATATGAACGACACTGAGTACCGGATGAACAGCGA
CCTTGTGAAGAAGCTGGAAGCTGACAAGGACCTGGCGAGT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1424:3104..9543+

>mRNA_H-canaliculatus_F_contig1424.3332.1 ID=mRNA_H-canaliculatus_F_contig1424.3332.1|Name=mRNA_H-canaliculatus_F_contig1424.3332.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2442bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1424:3104..9543+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCGCTTGCAGACCATGCTCCAGCAGAAGCTCGTCCACAAGTACGG
CACGAAGAGATGAGCCGCTTGCAGACCATGCTCCAGCAGAAGCTCGTCCA
CAAGTACGGCACGAAGAGGAGCCTCAACTCTAAACTGAACCAAGAAATCG
GGGAAGAAGAGCCTCAACTCTAAACTGAACCAAGAAATCGGGGAAGAAAA
AAAAGAAGGCGGCGTAGGCGATGCTGCTGCGGGGGGCAACGGTGAAGATC
GTCTTGGCGAGGGCCAGCTGCCACCTTCCATCGCCCGCGCCTGGCGCACA
TTCGACGTCGCCAAACAGATCGAATATGAGAGCAAGGAGCAGCAAAAGGC
GGAGAAAGCCAGGGTGCAAAAGAAGATGCAAAAAAAAGAAGGCGGCGTAG
GCGATGCTGCTGCGGGGGGCAACGGTGAAGATCGTCTTGGCGAGGGCCAG
CTGCCACCTTCCATCGCCCGCGCCTGGCGCACATTCGACGTCGCCAAACA
GATCGAATATGAGAGCAAGGAGCAGCAAAAGGCGGAGAAAGCCAGGGTGC
AAAAGAAGATGCAATTAGTGGTACACAGGGCGCGGCAGGAAGAGAGGAAA
CGTGAGGAAGAAGAAGAGAGACGTTAGTGGTACACAGGGCGCGGCAGGAA
GAGAGGAAACGTGAGGAAGAAGAAGAGAGACGGAAGCACATGGAAGAGCA
AGAGAGGCGGCTTGCAGAGTTTCACATGGAGCAGGAGGCGATCAAGCAAC
GCGCGGCCGACAAGCACGCCGAGGAAAAGGCCCTCCGCGAGCAACAGATT
AAGCGCCTGCAGGAAGCACATGGAAGAGCAAGAGAGGCGGCTTGCAGAGT
TTCACATGGAGCAGGAGGCGATCAAGCAACGCGCGGCCGACAAGCACGCC
GAGGAAAAGGCCCTCCGCGAGCAACAGATTAAGCGCCTGCAGGCCGAGAA
AGAGGCTGACCGGCAAGCCCGTCTGGCAAAGGAGATGCACGACATAGAGC
TATGCAAGGCACAGCTACAGGGCGAGGCCGAGAAAGAGGCTGACCGGCAA
GCCCGTCTGGCAAAGGAGATGCACGACATAGAGCTATGCAAGGCACAGCT
ACAGGGCGAGGTGGACGAAATGGAGCGGAAAAGAAAGATTGAAAAGGATC
GATTGGCCGCCATTCGCGAGGAGAACGGCAAACAGAGGGAGATCCGCGCT
CAAAAGCAGAGGTGGACGAAATGGAGCGGAAAAGAAAGATTGAAAAGGAT
CGATTGGCCGCCATTCGCGAGGAGAACGGCAAACAGAGGGAGATCCGCGC
TCAAAAGCAGAGGGAGTCCGACGAGGCCGACGCTCTGCTGCTGAAGGAGC
ACCGCCGGAGGATAGATGCAGAAGAGCAGGCGCGCGCAGCCAAACTCCAT
GGAGTCCGACGAGGCCGACGCTCTGCTGCTGAAGGAGCACCGCCGGAGGA
TAGATGCAGAAGAGCAGGCGCGCGCAGCCAAACTCCATGAACGCATGAAG
CGGTACGAGGAGATCGGGAACTTTTGGAGCGAACGAAGAGCCGGCAATAC
GCAGGCCGACGTCGAGCACCGTGAAGCGCAGCAGACCCTCAAGGCTGCAC
GGAGGAACGCATGAAGCGGTACGAGGAGATCGGGAACTTTTGGAGCGAAC
GAAGAGCCGGCAATACGCAGGCCGACGTCGAGCACCGTGAAGCGCAGCAG
ACCCTCAAGGCTGCACGGAGGAAAGAGGAGGCGACCCTGGAGCGCGAGAG
AAAGGAGAGTGAAGCAAGGCGTGCCGCCGGGAGAATCATGGCCGCAGAAA
ATCAAAAGGAAAGAGGAGGCGACCCTGGAGCGCGAGAGAAAGGAGAGTGA
AGCAAGGCGTGCCGCCGGGAGAATCATGGCCGCAGAAAATCAAAAGGTTA
TCCAGGAGAAGAGCGCCCTGAGCGCAAAAAAGCATAAGGAGGACATGGAA
TTTGCTCAAAGGTTATCCAGGAGAAGAGCGCCCTGAGCGCAAAAAAGCAT
AAGGAGGACATGGAATTTGCTCAAAGGTTTATTAGCGACTCGGAGGCGTT
TCGACGGGAGGAGCAAGACAAGATTGCCAAGAAGAGGATCGCCATGGCCA
AGTTTATTAGCGACTCGGAGGCGTTTCGACGGGAGGAGCAAGACAAGATT
GCCAAGAAGAGGATCGCCATGGCCAAGTACCGCAAAGATCTCGAGACGCA
AGTGCAAGAGACCAGGGCCCGGCGCATCCACGAGGATATGAACGACACTG
AGTACCGGATGAACAGCGACCTTGTGAAGAAGCTGGAAGCTGACAAGGAC
CTGGCGAGTGTACCGCAAAGATCTCGAGACGCAAGTGCAAGAGACCAGGG
CCCGGCGCATCCACGAGGATATGAACGACACTGAGTACCGGATGAACAGC
GACCTTGTGAAGAAGCTGGAAGCTGACAAGGACCTGGCGAGT
back to top