mRNA_H-canaliculatus_F_contig14238.3331.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14238.3331.1
Unique NamemRNA_H-canaliculatus_F_contig14238.3331.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14238.3331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14238contigH-canaliculatus_F_contig14238:425..1055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size570
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14238.3331.1prot_H-canaliculatus_F_contig14238.3331.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14238 425..773 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.4274151-CDS-H-canaliculatus_F_contig14238:424..6861622929173.4274151-CDS-H-canaliculatus_F_contig14238:424..686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14238 425..686 -
1696845705.9693956-CDS-H-canaliculatus_F_contig14238:424..6861696845705.9693956-CDS-H-canaliculatus_F_contig14238:424..686Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14238 425..686 -
1622929173.439078-CDS-H-canaliculatus_F_contig14238:747..7731622929173.439078-CDS-H-canaliculatus_F_contig14238:747..773Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14238 748..773 -
1696845705.981975-CDS-H-canaliculatus_F_contig14238:747..7731696845705.981975-CDS-H-canaliculatus_F_contig14238:747..773Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14238 748..773 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929173.4536693-UTR-H-canaliculatus_F_contig14238:773..10551622929173.4536693-UTR-H-canaliculatus_F_contig14238:773..1055Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14238 774..1055 -
1696845705.992756-UTR-H-canaliculatus_F_contig14238:773..10551696845705.992756-UTR-H-canaliculatus_F_contig14238:773..1055Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14238 774..1055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14238.3331.1

>prot_H-canaliculatus_F_contig14238.3331.1 ID=prot_H-canaliculatus_F_contig14238.3331.1|Name=mRNA_H-canaliculatus_F_contig14238.3331.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=96bp
MKARLVFGGTTRTHHMRKDIQQRSIHGPIGDEKRKRKRRQSPHPERCQRR
PSKAPVGRCASETVCTRYSSNLSPAEHSHDHGETDDDVLPHGLRN*
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mRNA from alignment at H-canaliculatus_F_contig14238:425..1055-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14238.3331.1 ID=mRNA_H-canaliculatus_F_contig14238.3331.1|Name=mRNA_H-canaliculatus_F_contig14238.3331.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=631bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14238:425..1055- (Hapterophycus canaliculatus Oshoro5f female)
GCCAGAATCGGAGGAAAGCGGTGGAGGCAAAAAAAAGGGGGGAGCCTTAC
GGTAGCATCGCTTTGCCTCGCACCACCTGCAGGTGGAACCCTGCGGACGA
GACCACTCCACAGTAGCTCGAGCCTGCCCGCACAGACAGGCCGCTCAGGG
GATGTACGCTGGGGTGTGCAGATGTGCTGAAACGATATCATCCGCACTGC
CATTGCTGCATACAATCGGCAGCGCGGCAGAAGCAAAAGCTTTTTCTCCT
CTGCGGCGAGAATCTTGCGAATTTCAGGCCAAATGAAGGCACGATTGGTG
TTCGGGGGGCGGGGGGGGGACCAGGGAGGCCACGGCATATTCCATCGAAG
CTGCAGTGAAAAATGAGAGCACAACGCGCACCCACCACATGCGAAAAGAC
ATCCAACAAAGATCGATACATGGGCCAATCGGGGACGAAAAAAGGAAGAG
AAAACGGAGGCAGTCCCCACATCCGGAAAGATGTCAAAGGCGCCCGTCAA
AGGCGCCCGTCGGCCGATGTGCTTCCGAAACGGTATGCACACGCTACAGC
TCCAATCTCTCACCGGCAGAACACAGCCATGATCACGGCGAAACTGATGA
CGATGTACTCCCACATGGCCTGCGCAATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14238:425..1055-

>mRNA_H-canaliculatus_F_contig14238.3331.1 ID=mRNA_H-canaliculatus_F_contig14238.3331.1|Name=mRNA_H-canaliculatus_F_contig14238.3331.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14238:425..1055- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGGCACGATTGGTGTTCGGGGGATGAAGGCACGATTGGTGTTCGGG
GGCACAACGCGCACCCACCACATGCGAAAAGACATCCAACAAAGATCGAT
ACATGGGCCAATCGGGGACGAAAAAAGGAAGAGAAAACGGAGGCAGTCCC
CACATCCGGAAAGATGTCAAAGGCGCCCGTCAAAGGCGCCCGTCGGCCGA
TGTGCTTCCGAAACGGTATGCACACGCTACAGCTCCAATCTCTCACCGGC
AGAACACAGCCATGATCACGGCGAAACTGATGACGATGTACTCCCACATG
GCCTGCGCAATTGACACAACGCGCACCCACCACATGCGAAAAGACATCCA
ACAAAGATCGATACATGGGCCAATCGGGGACGAAAAAAGGAAGAGAAAAC
GGAGGCAGTCCCCACATCCGGAAAGATGTCAAAGGCGCCCGTCAAAGGCG
CCCGTCGGCCGATGTGCTTCCGAAACGGTATGCACACGCTACAGCTCCAA
TCTCTCACCGGCAGAACACAGCCATGATCACGGCGAAACTGATGACGATG
TACTCCCACATGGCCTGCGCAATTGA
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