mRNA_H-canaliculatus_F_contig14211.3320.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14211.3320.1
Unique NamemRNA_H-canaliculatus_F_contig14211.3320.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14211.3320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14211contigH-canaliculatus_F_contig14211:1226..2217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size994
Cds size990
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929171.424034-CDS-H-canaliculatus_F_contig14211:1225..22151622929171.424034-CDS-H-canaliculatus_F_contig14211:1225..2215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14211 1226..2215 +
1696845705.0562613-CDS-H-canaliculatus_F_contig14211:1225..22151696845705.0562613-CDS-H-canaliculatus_F_contig14211:1225..2215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14211 1226..2215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14211.3320.1prot_H-canaliculatus_F_contig14211.3320.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14211 1226..2215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14211.3320.1

>prot_H-canaliculatus_F_contig14211.3320.1 ID=prot_H-canaliculatus_F_contig14211.3320.1|Name=mRNA_H-canaliculatus_F_contig14211.3320.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=330bp
TASALGVVPATRPSPPSVGAAGVMPSEFESDLTCGLDCQTVIPEFLQAKC
TEASFTQVTENETSLVDNHALTPAVYMTNNVVSGRSGPALPLDGRGGSAS
AGAATAATPSPEDAGIENIAPLPLPPPPRVHEDEGDEEIAQLYPLPLPPP
PRAREVPAPEPPSPAPLSSPDVSDVSASPVVPPPPARSMSQRKARELECS
FVGSQEPVLPRRTRSGIVHNYPLMSSAKPSPLQPVPPLPPPSTRGDNMAL
LGLLDRESLVSLLETKRVTEEMKGNSRNAGSGGSGSHPSGQDASLPAMLV
AQLASKSDLQAEMGGMRPQESPPEMPLCSG
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mRNA from alignment at H-canaliculatus_F_contig14211:1226..2217+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14211.3320.1 ID=mRNA_H-canaliculatus_F_contig14211.3320.1|Name=mRNA_H-canaliculatus_F_contig14211.3320.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=992bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14211:1226..2217+ (Hapterophycus canaliculatus Oshoro5f female)
ACTGCATCCGCACTTGGTGTAGTACCTGCCACTCGCCCCTCTCCGCCGTC
TGTCGGAGCAGCAGGTGTTATGCCTTCCGAGTTTGAATCAGACTTGACTT
GTGGATTGGACTGTCAGACTGTCATTCCCGAGTTCTTGCAGGCGAAGTGC
ACCGAGGCTTCTTTCACCCAGGTTACCGAGAACGAGACTTCGCTCGTAGA
CAATCATGCCCTGACTCCGGCGGTTTACATGACCAACAACGTCGTGTCGG
GACGTTCTGGGCCGGCGCTGCCGCTGGACGGCAGGGGGGGATCAGCATCA
GCTGGTGCTGCGACTGCCGCCACGCCATCACCGGAGGACGCGGGGATTGA
AAACATCGCGCCGCTGCCGCTGCCGCCGCCGCCGAGGGTGCACGAGGACG
AGGGGGATGAGGAGATCGCACAGCTGTACCCGCTGCCGCTGCCGCCGCCG
CCGAGGGCGCGTGAGGTGCCTGCCCCGGAGCCGCCCTCTCCTGCGCCTCT
GTCTTCGCCTGACGTTTCTGACGTTTCTGCTTCCCCTGTCGTGCCTCCGC
CACCGGCTCGTTCCATGAGCCAGCGCAAAGCACGGGAGCTGGAATGCTCG
TTCGTCGGCAGCCAGGAGCCGGTGCTTCCGCGTCGTACGAGATCGGGGAT
CGTGCACAACTATCCTCTCATGTCCTCCGCTAAACCGTCCCCTTTGCAGC
CGGTGCCGCCTCTGCCACCGCCATCGACGCGCGGTGACAACATGGCGCTT
CTGGGGCTGCTGGATCGAGAATCTCTGGTGTCGCTGCTGGAGACGAAACG
CGTGACGGAGGAGATGAAGGGGAATTCCAGGAATGCGGGATCGGGGGGGA
GTGGTTCGCATCCGTCGGGACAAGACGCTTCGCTGCCGGCGATGCTCGTG
GCGCAGCTGGCGAGCAAGAGCGACCTGCAAGCGGAGATGGGGGGCATGAG
GCCACAGGAATCGCCACCCGAGATGCCCTTGTGCAGTGGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14211:1226..2217+

>mRNA_H-canaliculatus_F_contig14211.3320.1 ID=mRNA_H-canaliculatus_F_contig14211.3320.1|Name=mRNA_H-canaliculatus_F_contig14211.3320.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1980bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14211:1226..2217+ (Hapterophycus canaliculatus Oshoro5f female)
ACTGCATCCGCACTTGGTGTAGTACCTGCCACTCGCCCCTCTCCGCCGTC
TGTCGGAGCAGCAGGTGTTATGCCTTCCGAGTTTGAATCAGACTTGACTT
GTGGATTGGACTGTCAGACTGTCATTCCCGAGTTCTTGCAGGCGAAGTGC
ACCGAGGCTTCTTTCACCCAGGTTACCGAGAACGAGACTTCGCTCGTAGA
CAATCATGCCCTGACTCCGGCGGTTTACATGACCAACAACGTCGTGTCGG
GACGTTCTGGGCCGGCGCTGCCGCTGGACGGCAGGGGGGGATCAGCATCA
GCTGGTGCTGCGACTGCCGCCACGCCATCACCGGAGGACGCGGGGATTGA
AAACATCGCGCCGCTGCCGCTGCCGCCGCCGCCGAGGGTGCACGAGGACG
AGGGGGATGAGGAGATCGCACAGCTGTACCCGCTGCCGCTGCCGCCGCCG
CCGAGGGCGCGTGAGGTGCCTGCCCCGGAGCCGCCCTCTCCTGCGCCTCT
GTCTTCGCCTGACGTTTCTGACGTTTCTGCTTCCCCTGTCGTGCCTCCGC
CACCGGCTCGTTCCATGAGCCAGCGCAAAGCACGGGAGCTGGAATGCTCG
TTCGTCGGCAGCCAGGAGCCGGTGCTTCCGCGTCGTACGAGATCGGGGAT
CGTGCACAACTATCCTCTCATGTCCTCCGCTAAACCGTCCCCTTTGCAGC
CGGTGCCGCCTCTGCCACCGCCATCGACGCGCGGTGACAACATGGCGCTT
CTGGGGCTGCTGGATCGAGAATCTCTGGTGTCGCTGCTGGAGACGAAACG
CGTGACGGAGGAGATGAAGGGGAATTCCAGGAATGCGGGATCGGGGGGGA
GTGGTTCGCATCCGTCGGGACAAGACGCTTCGCTGCCGGCGATGCTCGTG
GCGCAGCTGGCGAGCAAGAGCGACCTGCAAGCGGAGATGGGGGGCATGAG
GCCACAGGAATCGCCACCCGAGATGCCCTTGTGCAGTGGGACTGCATCCG
CACTTGGTGTAGTACCTGCCACTCGCCCCTCTCCGCCGTCTGTCGGAGCA
GCAGGTGTTATGCCTTCCGAGTTTGAATCAGACTTGACTTGTGGATTGGA
CTGTCAGACTGTCATTCCCGAGTTCTTGCAGGCGAAGTGCACCGAGGCTT
CTTTCACCCAGGTTACCGAGAACGAGACTTCGCTCGTAGACAATCATGCC
CTGACTCCGGCGGTTTACATGACCAACAACGTCGTGTCGGGACGTTCTGG
GCCGGCGCTGCCGCTGGACGGCAGGGGGGGATCAGCATCAGCTGGTGCTG
CGACTGCCGCCACGCCATCACCGGAGGACGCGGGGATTGAAAACATCGCG
CCGCTGCCGCTGCCGCCGCCGCCGAGGGTGCACGAGGACGAGGGGGATGA
GGAGATCGCACAGCTGTACCCGCTGCCGCTGCCGCCGCCGCCGAGGGCGC
GTGAGGTGCCTGCCCCGGAGCCGCCCTCTCCTGCGCCTCTGTCTTCGCCT
GACGTTTCTGACGTTTCTGCTTCCCCTGTCGTGCCTCCGCCACCGGCTCG
TTCCATGAGCCAGCGCAAAGCACGGGAGCTGGAATGCTCGTTCGTCGGCA
GCCAGGAGCCGGTGCTTCCGCGTCGTACGAGATCGGGGATCGTGCACAAC
TATCCTCTCATGTCCTCCGCTAAACCGTCCCCTTTGCAGCCGGTGCCGCC
TCTGCCACCGCCATCGACGCGCGGTGACAACATGGCGCTTCTGGGGCTGC
TGGATCGAGAATCTCTGGTGTCGCTGCTGGAGACGAAACGCGTGACGGAG
GAGATGAAGGGGAATTCCAGGAATGCGGGATCGGGGGGGAGTGGTTCGCA
TCCGTCGGGACAAGACGCTTCGCTGCCGGCGATGCTCGTGGCGCAGCTGG
CGAGCAAGAGCGACCTGCAAGCGGAGATGGGGGGCATGAGGCCACAGGAA
TCGCCACCCGAGATGCCCTTGTGCAGTGGG
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