mRNA_H-canaliculatus_F_contig14200.3314.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14200.3314.1
Unique NamemRNA_H-canaliculatus_F_contig14200.3314.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Match: D8LGI7_ECTSI (TIP120 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI7_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.130e-47
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLASDLNSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATRELAQFLRQQSRPLKQTTLETLLALIG 291
            QEIKECAITSMGLLLAHL+SDLN+QLPEVL LLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSAT ELAQFLRQQSRPLKQTTLETLLALIG
Sbjct:  523 QEIKECAITSMGLLLAHLSSDLNNQLPEVLGLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATEELAQFLRQQSRPLKQTTLETLLALIG 619
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BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Match: A0A7S2CTN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTN9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.020e-26
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLASDLNSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATRELAQFLRQQSRPLKQTTLETLLALI 288
            QEIKECAI ++G L++ L   L  +LP V  LLM+RL NE+TRM TLKA+A +  SP+ +DL PIL  A +EL+QFLRQQSRPLKQTTLETL+AL+
Sbjct:  381 QEIKECAIIAVGQLVSTLGDQLTDRLPVVEGLLMERLRNEITRMPTLKAIAMICASPIGIDLTPILNEAIQELSQFLRQQSRPLKQTTLETLMALV 476
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BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Match: A0A7S2FNG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FNG9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.330e-26
Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLASDLNSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATRELAQFLRQQSRPLKQTTLETLLALIG 291
            QEIKECAI ++G L+A L   LN +LP +  LLMDRL NE+TRM TLKAL  ++ S LK+DL P+L     EL +FLRQQSRPLKQ TLETL+ALI 
Sbjct:  588 QEIKECAIMAVGQLVASLGDKLNEELPIIEQLLMDRLRNEITRMPTLKALTMIAKSSLKIDLMPVLSQVVNELCRFLRQQSRPLKQKTLETLMALIS 684
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BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Match: A0A4D9CRZ7_9STRA (TIP120 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRZ7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.120e-21
Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLASDL-NSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATRELAQFLRQQSRPLKQTTLETLLALI 288
            QEIKE AI ++G L+AH    L   +L  VL LLM++L NE+TR  TL+ALA V+ SPL +DL PIL  A  ELA FLRQQSRPLK  TLETL+ L+
Sbjct:  269 QEIKEGAILAVGKLVAHAGDRLPKDELAGVLALLMEKLKNEITRTPTLRALAGVAASPLGIDLSPILAEAVEELAMFLRQQSRPLKLATLETLIGLV 365
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BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Match: A0A024TMU3_9STRA (TIP120 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMU3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.090e-20
Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLASDLNSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATRELAQFLRQQSRPLKQTTLETLLAL 285
            QEIK+ AI SMGLLLA L   L S+LP VL L+ +R+ NE+TR+A +KAL  ++ SPLK+DL  +L      LAQ +RQQSR LKQT L+TL+AL
Sbjct:  593 QEIKDNAIASMGLLLATLGDHLTSELPVVLPLIQERVQNEITRIAAIKALGIIARSPLKLDLTNVLVDVITTLAQMMRQQSRTLKQTALDTLIAL 687
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BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Match: W7U372_9STRA (Cullin-associated nedd8-dissociated protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U372_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.100e-20
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLASDL-NSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATRELAQFLRQQSRPLKQTTLETLLALI 288
            QEIKE AI ++G L+AH    L  ++L  VL LLM++L NE+TR  TL+ALA V+ SPL +DL PIL  A  ELA FLRQQSRPLK  TLE+L+ L+
Sbjct:  648 QEIKEGAILAVGKLVAHAGDCLPKNELAGVLALLMEKLKNEITRTPTLRALAGVAASPLGIDLSPILAEAVEELAMFLRQQSRPLKLATLESLIGLV 744
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BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Match: A0A2D4C4D5_PYTIN (TIP120 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4D5_PYTIN)

HSP 1 Score: 94.7 bits (234), Expect = 1.490e-20
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLASDLNSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATRELAQFLRQQSRPLKQTTLETLLALI 288
            QEIKE AI+ +G LLA L   L   +  V  LLMDRL NE+TR+ ++KALA ++ SPLK+D+ PIL SAT  +AQ LRQQSR LKQ TL++L  +I
Sbjct:  539 QEIKESAISCVGQLLARLGDQLGDGVNVVFPLLMDRLNNEITRVQSMKALAVIASSPLKLDMTPILASATTTMAQLLRQQSRTLKQATLDSLNVVI 634
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BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Match: A0A5N5F1M1_9ROSA (Cullin-associated NEDD8-dissociated protein 1-like n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F1M1_9ROSA)

HSP 1 Score: 94.4 bits (233), Expect = 2.050e-20
Identity = 48/96 (50.00%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLASDLNSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATRELAQFLRQQSRPLKQTTLETLLALI 288
            QE+KECAI+ MGL+++    +L+ +LP  L +L+DR+GNE+TR+  +KA A ++VSPLK+DL  +L     EL  FLR+ +RPL+Q TL TL +LI
Sbjct:  619 QEVKECAISCMGLVVSKFGDNLDVELPVCLPVLVDRMGNEITRLTAVKAFAVIAVSPLKIDLSCVLEQVIAELTAFLRKANRPLRQATLGTLNSLI 714
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BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Match: W9SU03_9ROSA (TIP120 domain-containing protein n=9 Tax=fabids TaxID=91835 RepID=W9SU03_9ROSA)

HSP 1 Score: 93.6 bits (231), Expect = 3.790e-20
Identity = 47/96 (48.96%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLASDLNSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATRELAQFLRQQSRPLKQTTLETLLALI 288
            QE+KECAIT MGL+++    +L ++LP  L +L+DR+GNE+TR+  +KA A ++ SPL++DL  +L     EL  FLR+ +RPL+Q TL TL +LI
Sbjct:  600 QEVKECAITCMGLVVSTFGDNLKAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLQIDLSCVLEQVITELTAFLRKANRPLRQATLGTLNSLI 695
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BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Match: A0A397B2C2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B2C2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.000e-20
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 QEIKECAITSMGLLLAHLASDLNSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKVDLKPILPSATRELAQFLRQQSRPLKQTTLETLLALI 288
            QEIK+ AI SMGL++A L   L S LP VL L+ +R+ NE+TR+A +KAL  ++ SPL++DL  +L      L+Q LRQQSR LKQT L+TL+AL+
Sbjct:  561 QEIKDNAIASMGLIVASLGDHLTSALPVVLPLIQERVQNEITRIAAIKALGIIARSPLQLDLSIVLADVVTSLSQLLRQQSRTLKQTALDTLIALV 656
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14200.3314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI7_ECTSI1.130e-4795.88TIP120 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S2CTN9_9STRA1.020e-2662.50Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2FNG9_9STRA2.330e-2661.86Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9CRZ7_9STRA3.120e-2158.76TIP120 domain-containing protein n=1 Tax=Nannochlo... [more]
A0A024TMU3_9STRA1.090e-2056.84TIP120 domain-containing protein n=1 Tax=Aphanomyc... [more]
W7U372_9STRA1.100e-2057.73Cullin-associated nedd8-dissociated protein 1 n=1 ... [more]
A0A2D4C4D5_PYTIN1.490e-2056.25TIP120 domain-containing protein n=1 Tax=Pythium i... [more]
A0A5N5F1M1_9ROSA2.050e-2050.00Cullin-associated NEDD8-dissociated protein 1-like... [more]
W9SU03_9ROSA3.790e-2048.96TIP120 domain-containing protein n=9 Tax=fabids Ta... [more]
A0A397B2C2_9STRA7.000e-2053.13Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14200contigH-canaliculatus_F_contig14200:569..1555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue1.6e-34
Seed eggNOG ortholog2880.D8LGI7
Preferred nameCAND1
KEGG koko:K09490,ko:K17263
KEGG TC1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
GOsGO:0000003,GO:0000151,GO:0000909,GO:0003002,GO:0003006,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009404,GO:0009653,GO:0009712,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009987,GO:0010033,GO:0010051,GO:0010228,GO:0010265,GO:0016020,GO:0016043,GO:0016567,GO:0016999,GO:0017144,GO:0018904,GO:0018940,GO:0018958,GO:0019538,GO:0019748,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030582,GO:0030584,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034293,GO:0036211,GO:0042221,GO:0042537,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043385,GO:0043412,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051321,GO:0051704,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072490,GO:0075259,GO:1900570,GO:1900588,GO:1900591,GO:1900797,GO:1901360,GO:1901564,GO:1901615,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.SCF complex assembly
EggNOG OGsKOG1824@1,KOG1824@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14200.3314.1prot_H-canaliculatus_F_contig14200.3314.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14200 599..1555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929170.6871352-UTR-H-canaliculatus_F_contig14200:568..5981622929170.6871352-UTR-H-canaliculatus_F_contig14200:568..598Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14200 569..598 +
1696845704.648899-UTR-H-canaliculatus_F_contig14200:568..5981696845704.648899-UTR-H-canaliculatus_F_contig14200:568..598Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14200 569..598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929170.7023594-CDS-H-canaliculatus_F_contig14200:598..6521622929170.7023594-CDS-H-canaliculatus_F_contig14200:598..652Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14200 599..652 +
1696845704.666025-CDS-H-canaliculatus_F_contig14200:598..6521696845704.666025-CDS-H-canaliculatus_F_contig14200:598..652Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14200 599..652 +
1622929170.7200336-CDS-H-canaliculatus_F_contig14200:1342..15551622929170.7200336-CDS-H-canaliculatus_F_contig14200:1342..1555Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14200 1343..1555 +
1696845704.678119-CDS-H-canaliculatus_F_contig14200:1342..15551696845704.678119-CDS-H-canaliculatus_F_contig14200:1342..1555Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14200 1343..1555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14200.3314.1

>prot_H-canaliculatus_F_contig14200.3314.1 ID=prot_H-canaliculatus_F_contig14200.3314.1|Name=mRNA_H-canaliculatus_F_contig14200.3314.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp
MGLLLAHLASDLNSQLPEVLNLLMDRLGNEMTRMATLKALAAVSVSPLKV
DLKPILPSATRELAQFLRQQSRPLKQTTLETLLALIGR*
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mRNA from alignment at H-canaliculatus_F_contig14200:569..1555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14200.3314.1 ID=mRNA_H-canaliculatus_F_contig14200.3314.1|Name=mRNA_H-canaliculatus_F_contig14200.3314.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=987bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14200:569..1555+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGAGATCAAGGAGTGCGCGATCACGTCGATGGGCCTCCTGCTGGCACA
CCTCGCGTCGGACCTCAACAGCCAGCTGCCTGAGGTACGCCGTTCTCGTC
GTAGCCCCTAGCTGTCGTCGTCGGGCTGACATTGGAAGGCGTTTTGACCC
CCGCCCCCCGGCACCTTCCGACTCCGCACCCCTTCCATCGGTGTTAGGTG
TTGAAGAAGAGTCCTCGCGTGTTGGTCGCCGGGCTGACTGACTCGGCAGC
TGACAGACGACGTGTTTCTGATTTTTGTTACACAACATGATGTGATTCGA
GTACGGCCGGTACATGGTGTGGTGGTGCATACACTGCCACCTCGTTCGTT
CGTGCTGAAGCACGAGAACGTGGGCACCGTGCAAGCGGACGTCCGGTGAA
GGAGTTGCGTTTCTGAAGGAGCACTTTCGGTGTCGTGGGTGCGCTTTGAT
GGGCGATACATACGGCGCAAGCGCCGGGGACGGGTGGTTGTCTGCGCAGA
GACGCATGGAACGGTGTCGTGTGTCATGTACAAGCAGCAGCGATGAGTGC
GAGCAATGGCGGCAAGTCTTGATACTGCTGACGGGTTAACCCTCACCGAT
GGCGTGACGGCTACTCGTATGCATCATCTTCGTCTTCTTCTTTTTTCATG
GCGAATCTTTGCTGCCACATCCTGCGATAGCCCGCTCGAGAAAAGAAGAC
GAGCCGAATCCGCCCCATCTCTCGCCCCGGCCCCTCGCCCCCCCGCGTGC
ACACGCTTGCTGTTGTGTTCGAAGGTGCTGAACCTCCTGATGGACCGCCT
TGGAAACGAGATGACCCGCATGGCGACCCTCAAGGCCCTCGCCGCGGTGT
CGGTCAGCCCGCTCAAGGTCGACCTCAAGCCCATCCTGCCCTCCGCCACG
CGAGAGCTCGCACAGTTCCTCAGGCAGCAGTCCCGGCCCCTCAAGCAGAC
CACGCTGGAGACTTTGCTCGCCTTGATCGGGAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14200:569..1555+

>mRNA_H-canaliculatus_F_contig14200.3314.1 ID=mRNA_H-canaliculatus_F_contig14200.3314.1|Name=mRNA_H-canaliculatus_F_contig14200.3314.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14200:569..1555+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCCTCCTGCTGGCACACCTCGCGTCGGACCTCAACAGCCAGCTGCC
TGAGATGGGCCTCCTGCTGGCACACCTCGCGTCGGACCTCAACAGCCAGC
TGCCTGAGGTGCTGAACCTCCTGATGGACCGCCTTGGAAACGAGATGACC
CGCATGGCGACCCTCAAGGCCCTCGCCGCGGTGTCGGTCAGCCCGCTCAA
GGTCGACCTCAAGCCCATCCTGCCCTCCGCCACGCGAGAGCTCGCACAGT
TCCTCAGGCAGCAGTCCCGGCCCCTCAAGCAGACCACGCTGGAGACTTTG
CTCGCCTTGATCGGGAGGTGAGTGCTGAACCTCCTGATGGACCGCCTTGG
AAACGAGATGACCCGCATGGCGACCCTCAAGGCCCTCGCCGCGGTGTCGG
TCAGCCCGCTCAAGGTCGACCTCAAGCCCATCCTGCCCTCCGCCACGCGA
GAGCTCGCACAGTTCCTCAGGCAGCAGTCCCGGCCCCTCAAGCAGACCAC
GCTGGAGACTTTGCTCGCCTTGATCGGGAGGTGA
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