mRNA_H-canaliculatus_F_contig1420.3312.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1420.3312.1
Unique NamemRNA_H-canaliculatus_F_contig1420.3312.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Match: A0A6H5KPV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV7_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 2.150e-114
Identity = 181/215 (84.19%), Postives = 194/215 (90.23%), Query Frame = 1 
Query:    1 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLTKAGSSGEKLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLLANDELETAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVRVCEEVGVPVEELDPSSARPAQASGGSGDDPQDEVGEEELPMEEE-VASDDETGAAGDGRGRAYK 642
            VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGA+NEA +QL KAGS G+KLAQLNKRVFLVERFVQARRLAK+DPDGMA MCQQLLAND+LETAMRAGDVFAALVDHFF+RGNWQQC+SLMGSMRDRGIVLDPYLDHGVL RVC+EVGVPVEELDPS   PAQ+    GDD +DEVGEE+LPMEEE VASD E    G  +GR+YK
Sbjct:  499 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGAMNEAARQLAKAGSPGDKLAQLNKRVFLVERFVQARRLAKDDPDGMAAMCQQLLANDDLETAMRAGDVFAALVDHFFERGNWQQCHSLMGSMRDRGIVLDPYLDHGVLARVCQEVGVPVEELDPSGVGPAQSGVDFGDDAEDEVGEEDLPMEEEEVASDAEGNFNGGNQGRSYK 713
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BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Match: D8LH96_ECTSI (Intraflagellar transport protein 140 puative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH96_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 1.140e-107
Identity = 181/215 (84.19%), Postives = 195/215 (90.70%), Query Frame = 1 
Query:    1 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLTKAGSSGEKLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLLANDELETAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVRVCEEVGVPVEELDPSSARPAQASGGSGDDPQDEVGEEELPMEEE-VASDDETGAAGDGRGRAYK 642
            VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGA+NEA +QL KAG +G+KLAQLNKRVFLVERFVQARRLAK+DPDGMA MCQQLLAND+LETAMRAGDVFAALV+HFF+RGNWQQC+SLMGSMRDRGIVLDPYLDHGVL RVC+EVGVPVEELDPS A  AQA  G GDD +DEVGEE+LPMEEE VASD E    G  +GR+YK
Sbjct: 1448 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGAMNEAARQLAKAGPAGDKLAQLNKRVFLVERFVQARRLAKDDPDGMAAMCQQLLANDDLETAMRAGDVFAALVNHFFERGNWQQCHSLMGSMRDRGIVLDPYLDHGVLARVCQEVGVPVEELDPSGAGLAQAGVGFGDDAEDEVGEEDLPMEEEEVASDAEGDFNGGDQGRSYK 1662
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BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Match: A0A813J7B5_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J7B5_POLGL)

HSP 1 Score: 162 bits (410), Expect = 6.550e-46
Identity = 85/193 (44.04%), Postives = 128/193 (66.32%), Query Frame = 1 
Query:    1 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLTKAGSSG----EKLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLLANDELETAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVRVCEEVGVPV-EELDPSSARPAQASGGSGDDPQDEVGEE 564
            +MK+II FY+KAKAH +L+ FYDACAQVEIDEYRDYEKA GAL EA+K + KA   G    +++  L  R+ +V++F   R++ K +P+ M  +C++++   ++ETA+R GD+FA LV+HF +  +++  +  +  +R RGIVL PYLDH +L  +   VG  + E +D  + + A A    GDD  +E+ EE
Sbjct:   83 IMKNIINFYSKAKAHDKLAVFYDACAQVEIDEYRDYEKAGGALREALKYIVKAAGPGAESDDRVLSLQSRIGIVDQFAAVRKMGKTEPEEMVAVCERMMNQPDVETAVRMGDIFAQLVEHFAEVRDYESAWRTVERLRQRGIVLTPYLDHSLLETIYSSVGQQLPESVDAGAPQAAPAQQQQGDDVGEEIDEE 275
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BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Match: A0A7S4W154_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4W154_9DINO)

HSP 1 Score: 169 bits (429), Expect = 3.370e-45
Identity = 90/194 (46.39%), Postives = 129/194 (66.49%), Query Frame = 1 
Query:    1 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLTKAGS----SGEKLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLLANDELETAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVRVCEEVGVPVEELDPSSARPAQASGGSGDDPQDEVGEEEL 570
            +MK+II FY+KAKAH +L+ FYDACAQVEIDEYRDYEKA GAL EA+K + KA      S  ++  L  R+ LV++F   R+LAK+ P+ M ++C+++L   E+ETA+R GD+FA LV+H+ +  +++  +  +  MR  GIVL PYLDH +LV +   VG P+ E +P+    A A G   D   +E+ EE+ 
Sbjct:  598 IMKNIIQFYSKAKAHDKLAAFYDACAQVEIDEYRDYEKAGGALGEALKYIKKAAGAQADSDARVVSLQNRISLVDKFASVRKLAKSSPEEMVSLCEEMLQTPEIETAVRVGDIFAQLVEHYSEVQDFEAAHRTVERMRASGIVLTPYLDHSLLVSIYNAVGQPMPESEPAGG--AAAQGHEDDGVHEEIEEEDA 789
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BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Match: A0A7S1RM46_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RM46_ALECA)

HSP 1 Score: 167 bits (424), Expect = 4.650e-45
Identity = 85/175 (48.57%), Postives = 124/175 (70.86%), Query Frame = 1 
Query:    1 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLTKAGSSGE----KLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLLANDELETAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVRVCEEVGVPVEELDPSSARPA 513
            +MK+II FY+KAKA+ +L+ FYDACAQVEIDEYRDY+KA GAL EA+K + KA  +G     ++  L  R+ LV+RF +ARR AK +P+ MA++C++LL   ++E+A+R GD+FA LV+H+ +  ++Q  ++ +  MR  GIVL PYLDH +L  +   VG  V E +P++  PA
Sbjct:  436 IMKNIIQFYSKAKAYDKLAAFYDACAQVEIDEYRDYDKASGALREALKFIMKAAGAGAEGDARVVSLQGRIALVDRFAEARRTAKTEPETMASVCEELLQTPDIESAVRIGDIFAQLVEHYAEVRDFQTAHTTVERMRSSGIVLTPYLDHALLESIYSAVGSAVPESEPAAGGPA 610
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BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Match: A0A6T8AMR5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T8AMR5_9EUKA)

HSP 1 Score: 157 bits (398), Expect = 1.370e-44
Identity = 81/164 (49.39%), Postives = 112/164 (68.29%), Query Frame = 1 
Query:    1 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLTKAGSSGE--KLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLLANDELETAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVRVCEEVGVPVEE 486
            ++K+I+AFYTKAKA  QLS FYDACAQVEIDEYRDYEKAL AL EA   L K    G+  K A L  R+  V+ FV AR++ K +P  M  +C +LL   ++E+A+R GDV+A +V+ F+ +   +Q Y+L+  MR+  I+L PYLDH ++  +C  VG+PV +
Sbjct:   50 IVKNIVAFYTKAKAFEQLSSFYDACAQVEIDEYRDYEKALVALREAASWLEKGRFQGKEAKQASLQTRISHVDGFVGARKMVKAEPQQMIQLCHELLEQLDVESAIRVGDVYALMVEWFYSQHQMEQAYALIDKMRNASIILSPYLDHEMVGAICTAVGMPVAQ 213
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BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Match: A0A813A7P7_SYMMI (IFT140 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A7P7_SYMMI)

HSP 1 Score: 165 bits (417), Expect = 2.080e-44
Identity = 86/193 (44.56%), Postives = 128/193 (66.32%), Query Frame = 1 
Query:    1 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLTKAGS----SGEKLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLLANDELETAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVRVCEEVGVPVEELDPSSARPAQASGGSGDDPQDEVGEEE 567
            +MK+II FY+KAKA+ +L+ FYDACAQVEIDEYRDYEKA GAL EA+K + KA      S E++  L  R+ LV+ F   R++AK +PD M  +C+++++   +++A+R GD+FA LV+++ D  ++   Y  +  MR+ GIVL PYLD  +L R+   VG P+ E + + A PA      G+D  +E+ EE+
Sbjct:  376 IMKNIIQFYSKAKAYDKLASFYDACAQVEIDEYRDYEKAGGALREALKYMAKAAGETAESDERVISLQSRIALVDEFAGVRKMAKTEPDQMVAVCERMVSTPNIDSAVRTGDIFAQLVEYYTDFNDYNSAYRTVERMREHGIVLTPYLDRALLERIYGAVGQPLPESEAAPAAPAA----DGEDVDEEIAEED 564
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BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Match: A0A7S0X996_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X996_9CHLO)

HSP 1 Score: 167 bits (423), Expect = 3.710e-44
Identity = 99/209 (47.37%), Postives = 139/209 (66.51%), Query Frame = 1 
Query:    1 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLTKAGSS--GEKLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLL------ANDELETAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVRVCEEVGVPVEELDPSSARPAQASGGSGDDPQDEVGEEELPMEEEVASDDE 603
            +MKSII FY+KA+A   L+ FY++CAQ+EIDEYRDY+KALGAL E++K L K+ +    E +  LN R+ +VERFVQAR+L K+DP  M  +C ++L      AND LE+++R GDVFA L+++++ +GN+QQ Y+L+  M+DRGIV+ PYLD  ++  V  E+GV           P   +GG  D   D  GEE   MEE +A DD+
Sbjct:  784 IMKSIINFYSKARAVESLAGFYESCAQIEIDEYRDYDKALGALRESLKHLLKSRTEDRAEAVDGLNARIGMVERFVQARKLIKDDPHEMVRICTEILNDPQIGAND-LESSIRVGDVFALLIEYWYAQGNYQQAYTLIEQMKDRGIVVAPYLDAEMVETVYREMGV--------DTAPRAGAGGGRDSGVDSDGEE--MMEENIAIDDD 981
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BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Match: A0A813CP16_9DINO (Ift140 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CP16_9DINO)

HSP 1 Score: 165 bits (418), Expect = 1.940e-43
Identity = 86/194 (44.33%), Postives = 128/194 (65.98%), Query Frame = 1 
Query:    1 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLTKAGS----SGEKLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLLANDELETAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVRVCEEVGVPVEELDPSSARPAQASGGSGDDPQDEVGEEEL 570
            +MK+II FY+KAKA+ +L+ FYDACAQVEIDEYRDYEKA GAL EA+K + KA      S E++  L  R+ LV+ F   R++AK +PD M  +C+++++   +++A+R GD+FA LV+++ D  ++   Y  +  MR+ GIVL PYLD  +L R+   VG P+ E + + A PA      G+D  +E+ EE+ 
Sbjct: 1042 IMKNIIQFYSKAKAYDKLASFYDACAQVEIDEYRDYEKAGGALREALKYMAKAAGETAESDERVISLQSRIALVDEFAGVRKMAKTEPDQMVAVCERMVSTPNIDSAVRTGDIFAQLVEYYTDFNDYNSAYRTVERMREHGIVLTPYLDRALLERIYGAVGQPLPESEAAPAAPAA----DGEDVDEEIAEEDC 1231
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BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Match: A0A812JZT3_9DINO (Ift140 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812JZT3_9DINO)

HSP 1 Score: 165 bits (417), Expect = 2.500e-43
Identity = 86/193 (44.56%), Postives = 128/193 (66.32%), Query Frame = 1 
Query:    1 VMKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLTKAGS----SGEKLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLLANDELETAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVRVCEEVGVPVEELDPSSARPAQASGGSGDDPQDEVGEEE 567
            +MK+II FY+KAKA+ +L+ FYDACAQVEIDEYRDYEKA GAL EA+K + KA      S E++  L  R+ LV+ F   R++AK +PD M  +C+++++   +++A+R GD+FA LV+++ D  ++   Y  +  MR+ GIVL PYLD  +L R+   VG P+ E + + A PA      G+D  +E+ EE+
Sbjct:  910 IMKNIIQFYSKAKAYDKLASFYDACAQVEIDEYRDYEKAGGALREALKYMAKAAGETAESDERVISLQSRIALVDEFAGVRKMAKTEPDQMVAVCERMVSTPNIDSAVRTGDIFAQLVEYYTDFNDYNSAYRTVERMREHGIVLTPYLDRALLERIYGAVGQPLPESEAAPAAPAA----DGEDVDEEIAEED 1098
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1420.3312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV7_9PHAE2.150e-11484.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH96_ECTSI1.140e-10784.19Intraflagellar transport protein 140 puative n=1 T... [more]
A0A813J7B5_POLGL6.550e-4644.04Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7S4W154_9DINO3.370e-4546.39Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S1RM46_ALECA4.650e-4548.57Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6T8AMR5_9EUKA1.370e-4449.39Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A813A7P7_SYMMI2.080e-4444.56IFT140 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S0X996_9CHLO3.710e-4447.37Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A813CP16_9DINO1.940e-4344.33Ift140 protein n=2 Tax=Symbiodinium TaxID=2949 Rep... [more]
A0A812JZT3_9DINO2.500e-4344.56Ift140 protein n=1 Tax=Symbiodinium sp. CCMP2456 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1420contigH-canaliculatus_F_contig1420:12632..16086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score352.8
Seed ortholog evalue1.1e-94
Seed eggNOG ortholog2880.D8LH96
Preferred nameIFT140
KEGG koko:K19672
GOsGO:0001501,GO:0001654,GO:0001655,GO:0001750,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007568,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008340,GO:0008589,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010259,GO:0010638,GO:0010646,GO:0010970,GO:0015630,GO:0016043,GO:0021532,GO:0021915,GO:0022008,GO:0022607,GO:0022611,GO:0023051,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031076,GO:0031344,GO:0031346,GO:0031503,GO:0032386,GO:0032388,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035721,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0040024,GO:0042073,GO:0042461,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043053,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048666,GO:0048699,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0055115,GO:0060041,GO:0060173,GO:0060271,GO:0060341,GO:0060429,GO:0060491,GO:0060632,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1904888,GO:1905515,GO:1905796,GO:1905798,GO:1905799,GO:1905801,GO:1990403
EggNOG free text desc.intraciliary retrograde transport
EggNOG OGsKOG3617@1,KOG3617@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size645
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1420.3312.1prot_H-canaliculatus_F_contig1420.3312.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1420 12635..16086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929170.1350813-UTR-H-canaliculatus_F_contig1420:12631..126341622929170.1350813-UTR-H-canaliculatus_F_contig1420:12631..12634Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1420 12632..12634 +
1696845704.4437644-UTR-H-canaliculatus_F_contig1420:12631..126341696845704.4437644-UTR-H-canaliculatus_F_contig1420:12631..12634Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1420 12632..12634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929170.3537676-CDS-H-canaliculatus_F_contig1420:12634..127121622929170.3537676-CDS-H-canaliculatus_F_contig1420:12634..12712Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 12635..12712 +
1696845704.4626632-CDS-H-canaliculatus_F_contig1420:12634..127121696845704.4626632-CDS-H-canaliculatus_F_contig1420:12634..12712Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 12635..12712 +
1622929170.3699734-CDS-H-canaliculatus_F_contig1420:13560..136941622929170.3699734-CDS-H-canaliculatus_F_contig1420:13560..13694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 13561..13694 +
1696845704.474606-CDS-H-canaliculatus_F_contig1420:13560..136941696845704.474606-CDS-H-canaliculatus_F_contig1420:13560..13694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 13561..13694 +
1622929170.3812225-CDS-H-canaliculatus_F_contig1420:13981..141611622929170.3812225-CDS-H-canaliculatus_F_contig1420:13981..14161Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 13982..14161 +
1696845704.483811-CDS-H-canaliculatus_F_contig1420:13981..141611696845704.483811-CDS-H-canaliculatus_F_contig1420:13981..14161Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 13982..14161 +
1622929170.3917148-CDS-H-canaliculatus_F_contig1420:14805..149261622929170.3917148-CDS-H-canaliculatus_F_contig1420:14805..14926Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 14806..14926 +
1696845704.4924428-CDS-H-canaliculatus_F_contig1420:14805..149261696845704.4924428-CDS-H-canaliculatus_F_contig1420:14805..14926Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 14806..14926 +
1622929170.4036248-CDS-H-canaliculatus_F_contig1420:15957..160861622929170.4036248-CDS-H-canaliculatus_F_contig1420:15957..16086Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 15958..16086 +
1696845704.5010962-CDS-H-canaliculatus_F_contig1420:15957..160861696845704.5010962-CDS-H-canaliculatus_F_contig1420:15957..16086Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 15958..16086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1420.3312.1

>prot_H-canaliculatus_F_contig1420.3312.1 ID=prot_H-canaliculatus_F_contig1420.3312.1|Name=mRNA_H-canaliculatus_F_contig1420.3312.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=214bp
MKSIIAFYTKAKAHLQLSDFYDACAQVEIDEYRDYEKALGALNEAVKQLT
KAGSSGEKLAQLNKRVFLVERFVQARRLAKNDPDGMATMCQQLLANDELE
TAMRAGDVFAALVDHFFDRGNWQQCYSLMGSMRDRGIVLDPYLDHGVLVR
VCEEVGVPVEELDPSSARPAQASGGSGDDPQDEVGEEELPMEEEVASDDE
TGAAGDGRGRAYK*
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mRNA from alignment at H-canaliculatus_F_contig1420:12632..16086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1420.3312.1 ID=mRNA_H-canaliculatus_F_contig1420.3312.1|Name=mRNA_H-canaliculatus_F_contig1420.3312.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3455bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1420:12632..16086+ (Hapterophycus canaliculatus Oshoro5f female)
GTGATGAAGTCAATTATAGCGTTCTATACCAAGGCCAAGGCGCACTTGCA
GCTCTCCGACTTTTACGACGCTTGCGCTCAGGTATGTTGGATGGAAAGCG
CTGCGTGCCGTAGCCAAAACGCCGAACGCTGACATGACTGTGGCCACTCA
GAACCAGGACGAGCAGTTTGGAACTCGTAAGCGGCAGAGTTTTGAGGCAC
GAAAGGAGAAGTCGTGCAAGCGTGGTGGCGCCAAGACGGTAGTTTCAACA
ATTTATCGACCTTCTGGAGAGGATGCTCGGAGTGACTTCATCACCCATCC
GACTTCCGACGGCAGCAGAAAAGGCGAAACTTGGGGGTGACGAATTGGAT
TGCCGTTTTGTACGGGGAGGACTGATTGATGCCCTTGCAGGCCGTTGTCA
TGATGCCTGAAAAACAAGCGGAAGACTCCAGGCGCCGTGAAGACCTGTTC
GTCATGTGACAACGCATCTCTCCATCTTTTCCCAAGCCAAAATGGCGTTC
TGTATGTCAGGCAGGCACGACAAGGTCATCCATTCGATCGGCGCTGCCCC
TTCCGAGGGCGATTTGAAAAAGTGGCTTTGCTGCATATTCTGACGCACGA
GACACGCTACACAAACGTTGCTGGTCTCTCCCCTCCTCTACTGATTCGTT
CTGAAACGGCTTTTCGCTCTATTCTGTCCAACGCTTTGCAACTGCTAGTA
ATGCAGATCTCCTGTTCAAACGAACGAGAAAGTAGAAGATGGCCCCCGAC
CACGATCAAACACTCTTCGTGATCTGCAATCAGACCAACAACCTCATGTT
CTTACAGCAACACTTAAAGACAACAAGTACACAATAGCTCCACACGCATT
TATCGGCAACGCAAACCTTCACTTGTCGGGTTGCCTACCTCCTTGCTTGA
TGTTTGCTGGCTGGCTGGACATACTCAAGGTGGAAATTGACGAGTATCGA
GACTACGAGAAGGCGCTTGGAGCTTTGAACGAGGCCGTGAAGCAGCTTAC
TAAGGCAGGTTCCTCGGGTGAAAAGCTGGCTCAGCTCAACAAGCGGGTAT
TCCTCGTGGAAAGGTGGGTGCAGTTTGAAAGTAGTCGTTTCCAAAGGTCG
TTAAGGTATCGGCCGAGTAATCCCTTTTGTACCCTACTCCTCGTAGAGAT
GTGTTGACCTCCCGTCCAGCCGAGCCATCACCAACAACGGCACAAAGCAG
ATTAGCGGCATCGAAGTACTCGCAGTAGCAACACAGTGACGAAGGACGAA
GGAGGCGACCAAGCACCACAAATTGAAGCGACAACAAGAACAAACAGCGC
TACATGCCAGACAACACGCACGACAAGAACGACCTTCCTTGGCCCCTCAG
GTTTGTCCAGGCCCGAAGGCTAGCCAAAAATGATCCGGATGGTATGGCAA
CTATGTGCCAGCAGCTCTTGGCCAACGACGAGCTCGAGACAGCGATGAGG
GCGGGGGATGTCTTTGCGGCGCTTGTGGACCACTTCTTCGACAGAGGAAA
TTGGCAGCAATGCTATTCGCTCATGGGAAGGTTTGGCTGTCCTATTGATC
GACGCGTGTAATCGCACTCCGCTGGTGCTGCAGCTTTAGGGCAAAATAAT
CAACTTCTTGCTAGATGTTCTCGGTGCGTGATGCTGGTTGAGTTGATGGC
CTTGAGTGTTCCGTACGGCCAACACTATCTTGTATGTCGGAGGGTAGGGG
GTGCGCCAACGTGGCGGCTTCCCCATCGTGAATATTGTTCCCCTTCAGGT
GCTGTCGCCTACCGAACGCCCACTCGCTTCTCGCGAAAAAAAGAGCACGC
GGTGACTGAAGCATTCCACATTTCCTCCACCCCGAAGCTGACTCTTTTAG
CCAACCACACCGCGATGGAAACTCGCGTGTCCGGTGGAAACGAAAAGGCC
CGTTTCGAACCATGGAAGCCATGACACGAACTTTGACCAGGGCATTAATC
TTGATCGATACATTGGCCAGGGGTAGACTGCCACCATTCATGCTTGATGT
TCGATTTTGTTTTGTCTCTACTTTGGCCACCACTCAAACCTTTGGCGCGA
GTCATAGGACATCCACCAGTCTCAGCTTCCTCGCGAACGCGACCCCCCGC
GCCTAGACGAGCCACCATCAACAACTGTCCCTCTCCATGGACTCAACCCG
GTTTGCATCTGTCTTTACTATCAGCATGCGAGACCGCGGGATAGTTCTGG
ACCCTTACCTCGACCACGGCGTGCTGGTCAGAGTGTGCGAGGAGGTTGGA
GTACCGGTGGAAGAGCTAGATCCCTCGAGTGCGAGACCTGCACAGGTTAG
CATCTCACCGTCCGCAGTGATTGAATACTAATGATGGAGTGTCGTGGCAC
TAGAGTGTACGTGTGCGATGAGGTGCAAAATGATTTGCTCGGTCATAGGT
TGGTTCTGAATCAATTCCGGAAGCTAAAAGGTCTTTGAGGAATCGGCATA
TCTTTTGTGTCGACTCTTGCTCGAAGGGCGTTCCACGAGGGTGAAGCTTG
TAGCCAGCACCGTCTTAGGTATTCGGTGCGAGGGTTGGCTAGCAGCCTTG
AGTAAGTTTTCCTCCACGATGTCAACGACGAATTATCACCTGTGCCCTTC
TAAAGCAGGGCTCGCCAGGTTGACCACGAGCTCTCTCTTGAGACTTTGAA
TGGTGGTGGCTGTGACCAAAACAGTCCGGTCTCGATTGGCGCTACCTTTG
ATCGTAATCGCACCCCCTCTATAGACAGTATAGACAGAGACTTTCAGTTC
CTTCTGGACTCGCGTCCCTTCGTCGTTTGTGGGAGGATATTCAAATCGCA
TTCAAGGGGCGATGGTGTCCGCCTCCTTCAGGCCAGGGACTGTAAGCGGT
TCGCTCGAACTTGCAGCTGTGAGCGTCTTGGCGACCAAGGTCACGGTCCC
AATCGGAGGAACTCCATCTGATGTGAACGTTTGCTTTTCGAGGAAACGTG
TACGCTTGTCCGGATAGCACTCCACCAGGCTATCTGGACAGATTCAAGCC
ACAAAGCTACTGTTCGTGCTCACTCGCTGGACAGAGAGGCACGAGTCTGT
TTGCTGTACAGACAGATCAGCACGAACGAACTAGAGGGGGACGCGGCAGG
ATGAAGAGCACCGACCACCCCGAACATGAAGATTGTATTTTGATCGACCA
GGGTTGATTTAAAGACTGACGGTAGAAGAAAAACCAAAGGCGGTGCACCC
ACTCGGAAATGAAACAGCGCGAAATACACGTGTCCGTGCGGGCCACATCA
AATTTCCTATAGATTCTGAAGGAAAACAATGATTTGTGTTACTCAGAGTC
TGTGCTTAATTGAAATTGAAAATCAGGCTAGCGGCGGTTCCGGAGACGAC
CCACAGGACGAAGTGGGGGAAGAGGAGCTCCCGATGGAAGAGGAGGTCGC
ATCTGACGACGAAACTGGTGCTGCTGGCGATGGTCGAGGACGAGCTTACA
AGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1420:12632..16086+

>mRNA_H-canaliculatus_F_contig1420.3312.1 ID=mRNA_H-canaliculatus_F_contig1420.3312.1|Name=mRNA_H-canaliculatus_F_contig1420.3312.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1284bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1420:12632..16086+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGTCAATTATAGCGTTCTATACCAAGGCCAAGGCGCACTTGCAGCT
CTCCGACTTTTACGACGCTTGCGCTCAGATGAAGTCAATTATAGCGTTCT
ATACCAAGGCCAAGGCGCACTTGCAGCTCTCCGACTTTTACGACGCTTGC
GCTCAGGTGGAAATTGACGAGTATCGAGACTACGAGAAGGCGCTTGGAGC
TTTGAACGAGGCCGTGAAGCAGCTTACTAAGGCAGGTTCCTCGGGTGAAA
AGCTGGCTCAGCTCAACAAGCGGGTATTCCTCGTGGAAAGGTGGAAATTG
ACGAGTATCGAGACTACGAGAAGGCGCTTGGAGCTTTGAACGAGGCCGTG
AAGCAGCTTACTAAGGCAGGTTCCTCGGGTGAAAAGCTGGCTCAGCTCAA
CAAGCGGGTATTCCTCGTGGAAAGGTTTGTCCAGGCCCGAAGGCTAGCCA
AAAATGATCCGGATGGTATGGCAACTATGTGCCAGCAGCTCTTGGCCAAC
GACGAGCTCGAGACAGCGATGAGGGCGGGGGATGTCTTTGCGGCGCTTGT
GGACCACTTCTTCGACAGAGGAAATTGGCAGCAATGCTATTCGCTCATGG
GAAGGTTTGTCCAGGCCCGAAGGCTAGCCAAAAATGATCCGGATGGTATG
GCAACTATGTGCCAGCAGCTCTTGGCCAACGACGAGCTCGAGACAGCGAT
GAGGGCGGGGGATGTCTTTGCGGCGCTTGTGGACCACTTCTTCGACAGAG
GAAATTGGCAGCAATGCTATTCGCTCATGGGAAGCATGCGAGACCGCGGG
ATAGTTCTGGACCCTTACCTCGACCACGGCGTGCTGGTCAGAGTGTGCGA
GGAGGTTGGAGTACCGGTGGAAGAGCTAGATCCCTCGAGTGCGAGACCTG
CACAGCATGCGAGACCGCGGGATAGTTCTGGACCCTTACCTCGACCACGG
CGTGCTGGTCAGAGTGTGCGAGGAGGTTGGAGTACCGGTGGAAGAGCTAG
ATCCCTCGAGTGCGAGACCTGCACAGGCTAGCGGCGGTTCCGGAGACGAC
CCACAGGACGAAGTGGGGGAAGAGGAGCTCCCGATGGAAGAGGAGGTCGC
ATCTGACGACGAAACTGGTGCTGCTGGCGATGGTCGAGGACGAGCTTACA
AGTAGGCTAGCGGCGGTTCCGGAGACGACCCACAGGACGAAGTGGGGGAA
GAGGAGCTCCCGATGGAAGAGGAGGTCGCATCTGACGACGAAACTGGTGC
TGCTGGCGATGGTCGAGGACGAGCTTACAAGTAG
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