mRNA_H-canaliculatus_F_contig1420.3310.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1420.3310.1
Unique NamemRNA_H-canaliculatus_F_contig1420.3310.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1420.3310.1 vs. uniprot
Match: D8LH96_ECTSI (Intraflagellar transport protein 140 puative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH96_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 7.870e-87
Identity = 161/234 (68.80%), Postives = 183/234 (78.21%), Query Frame = 1 
Query:    1 QTNKTHAPGWTTKQGRQQQTYQNSSSGRKVAAAADRRPPSPGDSGGPSDWRALAPTTLDSAAVGSLRWGAAGGVLGASGRDMVNGTHVLAETVLHRQLSGNVAIIQLSSDTLSIEYQKGGDYGGGS--TKTADGGVVRSVETAMGDGNTASSPSSMEGEQMVRCDISIKGFHLQGDSLLVHNSKQAQLVKLRGAGLAPKRSDPWPCSARSVAVDDARDQAFVAAGSRVEIFNLQ 696
            +TNK HA GW+TK  R+         G K A A  +RPPSPGDSGGPSDW++L PTTLDSAAVG LRWGAAGGVLGA GRDMV+G HVLAETVLHRQLSGNVA++Q SSDTLSIEYQ+ G         K    G+  + + A  +G  +   S++EGE +VRCDI+IKGFHLQGDSLLVHNSKQAQLVKLRGAGL+PKR DPWPC ARSVAVDDARDQAFVAAGSRVEI+NL+
Sbjct:  364 ETNK-HASGWSTKFNRR---------GSKTAGADLKRPPSPGDSGGPSDWKSLTPTTLDSAAVGLLRWGAAGGVLGAIGRDMVDGAHVLAETVLHRQLSGNVAVVQFSSDTLSIEYQREGXXXXXXXXNKPISSGMATATKGAAIEGGNS---STVEGEHVVRCDITIKGFHLQGDSLLVHNSKQAQLVKLRGAGLSPKRGDPWPCLARSVAVDDARDQAFVAAGSRVEIYNLK 584
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BLAST of mRNA_H-canaliculatus_F_contig1420.3310.1 vs. uniprot
Match: A0A6H5KNV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV4_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 6.780e-52
Identity = 98/148 (66.22%), Postives = 115/148 (77.70%), Query Frame = 1 
Query:   79 GRKVAAAADRRPPSPGDSGGPSDWRALAPTTLDSAAVGSLRWGAAGGVLGASGRDMVNGTHVLAETVLHRQLSGNVAIIQLSSDTLSIEYQKGGD--YGGGSTKTADGGVVRSVETAMGDGNTASSPSSMEGEQMVRCDISIKGFHLQ 516
            G K A A  +RPPSPGDSGGPSDW++L PTTLDSAAVG LRWGAAGGVLGA GRDMV+G HVLAETVLHRQLSGNVA++QLSSDTLSIEYQ+ G+      + K    G+  + + A  +G  +   S++EGE +VRCDISIKGFHLQ
Sbjct:  148 GSKTAGADLKRPPSPGDSGGPSDWKSLTPTTLDSAAVGLLRWGAAGGVLGAIGRDMVDGAHVLAETVLHRQLSGNVAVVQLSSDTLSIEYQREGEGSXXXXNNKPISSGMATATKGAAIEGGNS---STVEGEHVVRCDISIKGFHLQ 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1420.3310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH96_ECTSI7.870e-8768.80Intraflagellar transport protein 140 puative n=1 T... [more]
A0A6H5KNV4_9PHAE6.780e-5266.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1420contigH-canaliculatus_F_contig1420:132..2201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue6.8e-77
Seed eggNOG ortholog2880.D8LH96
Preferred nameIFT140
KEGG koko:K19672
GOsGO:0001501,GO:0001654,GO:0001655,GO:0001750,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007568,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008340,GO:0008589,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010259,GO:0010638,GO:0010646,GO:0010970,GO:0015630,GO:0016043,GO:0021532,GO:0021915,GO:0022008,GO:0022607,GO:0022611,GO:0023051,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031076,GO:0031344,GO:0031346,GO:0031503,GO:0032386,GO:0032388,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035721,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0040024,GO:0042073,GO:0042461,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043053,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048666,GO:0048699,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0055115,GO:0060041,GO:0060173,GO:0060271,GO:0060341,GO:0060429,GO:0060491,GO:0060632,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1904888,GO:1905515,GO:1905796,GO:1905798,GO:1905799,GO:1905801,GO:1990403
EggNOG free text desc.intraciliary retrograde transport
EggNOG OGsKOG3617@1,KOG3617@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIntraflagellar transport protein 140 putative
Ec32 orthologEc-24_001080.1
Exons4
Model size720
Cds size720
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1420.3310.1prot_H-canaliculatus_F_contig1420.3310.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1420 132..2201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.595548-CDS-H-canaliculatus_F_contig1420:131..4271622929169.595548-CDS-H-canaliculatus_F_contig1420:131..427Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 132..427 +
1696845704.1778753-CDS-H-canaliculatus_F_contig1420:131..4271696845704.1778753-CDS-H-canaliculatus_F_contig1420:131..427Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 132..427 +
1622929169.617974-CDS-H-canaliculatus_F_contig1420:623..8431622929169.617974-CDS-H-canaliculatus_F_contig1420:623..843Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 624..843 +
1696845704.1888237-CDS-H-canaliculatus_F_contig1420:623..8431696845704.1888237-CDS-H-canaliculatus_F_contig1420:623..843Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 624..843 +
1622929169.639012-CDS-H-canaliculatus_F_contig1420:1511..15501622929169.639012-CDS-H-canaliculatus_F_contig1420:1511..1550Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 1512..1550 +
1696845704.2063613-CDS-H-canaliculatus_F_contig1420:1511..15501696845704.2063613-CDS-H-canaliculatus_F_contig1420:1511..1550Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 1512..1550 +
1622929169.6651433-CDS-H-canaliculatus_F_contig1420:2036..22011622929169.6651433-CDS-H-canaliculatus_F_contig1420:2036..2201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 2037..2201 +
1696845704.216973-CDS-H-canaliculatus_F_contig1420:2036..22011696845704.216973-CDS-H-canaliculatus_F_contig1420:2036..2201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1420 2037..2201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1420.3310.1

>prot_H-canaliculatus_F_contig1420.3310.1 ID=prot_H-canaliculatus_F_contig1420.3310.1|Name=mRNA_H-canaliculatus_F_contig1420.3310.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=240bp
QTNKTHAPGWTTKQGRQQQTYQNSSSGRKVAAAADRRPPSPGDSGGPSDW
RALAPTTLDSAAVGSLRWGAAGGVLGASGRDMVNGTHVLAETVLHRQLSG
NVAIIQLSSDTLSIEYQKGGDYGGGSTKTADGGVVRSVETAMGDGNTASS
PSSMEGEQMVRCDISIKGFHLQGDSLLVHNSKQAQLVKLRGAGLAPKRSD
PWPCSARSVAVDDARDQAFVAAGSRVEIFNLQACMGEKL*
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mRNA from alignment at H-canaliculatus_F_contig1420:132..2201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1420.3310.1 ID=mRNA_H-canaliculatus_F_contig1420.3310.1|Name=mRNA_H-canaliculatus_F_contig1420.3310.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2070bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1420:132..2201+ (Hapterophycus canaliculatus Oshoro5f female)
CAAACCAACAAGACCCATGCCCCTGGGTGGACCACAAAGCAAGGGCGGCA
GCAGCAGACATATCAAAATAGCAGCAGCGGCAGGAAGGTGGCAGCGGCGG
CGGATCGGCGCCCCCCATCTCCCGGCGACTCAGGAGGGCCGAGCGACTGG
AGGGCCCTGGCTCCGACCACGCTCGACAGCGCGGCGGTTGGTTCGCTGCG
TTGGGGGGCTGCCGGGGGCGTGCTGGGCGCAAGCGGGCGAGATATGGTGA
ACGGGACGCATGTCTTGGCGGAGACGGTGTTGCACCGCCAGCTAAGGTAT
TTCCACCCCCTTGCTACCCTCTCGCCACGATATATGAGATGCCGCGACAG
AGATAGTGACGATGTAAGCAACAACAACGATGCTGGCGAGTAGTACCGCG
GCTGAATACACTCGTTGCCCCGCGATAGTAGCTGAGCCCCAAAATAATCT
ACGTACCTTTTCCGAATGGCGCTCATCGCTTTTCAATTCCAGTGGCAACG
TTGCGATTATCCAGCTCTCCAGCGACACCCTCAGCATCGAGTATCAAAAG
GGGGGTGACTATGGCGGGGGGAGTACCAAAACGGCCGACGGTGGTGTTGT
CCGCAGTGTAGAGACGGCGATGGGCGATGGAAACACTGCTTCCTCTCCGT
CATCCATGGAAGGGGAGCAGATGGTGCGATGCGATATCAGCATAAAGGGT
TTCCACCTACAGGTGAGAAGCGGCGGCATCACCTTCCCCATTGTCGTCAA
CATGGTTCTTCTGACGTGCTGACCCCTTCTCCTTGGTCGGCGAAATAAAA
TTCACGGGTAGTGACGTATTTTGGACCCACCACCCTGTCCAGCCATCAAC
TAATCTAGCCAGGAAGATGGAATGTGGTCAGACTTAAAGTTCGGGTAGCT
CGGCGGAGGAAGAGACGGTGGCAAGTCGAGCAGACCGACAAGATCAACCT
TCCGATGCCGCGAGAGCTCTCGCCGTATCTCCCAACTTCATGGTAGATGT
GCCCAAGCACTCCGGGGGATGTAAAATTCGCCCTTCTGTGAAAACGAGCC
GGTCGCTCAGCATGTTTCGCCCTTGCCTCGCCGTCGACCAACTAGGCCCA
GAACGAGAAATATCCACCACTAAGATGGTGATGCCCGCAAAAAAGATTTG
CATGCGGTCATCGTCGACGACCCTCGGAGGTTCCGATTTCCTCCTAGCGC
GCTCGACATCTTCCATCAACATGGCGCCCGACTCCTGCTTGTATGCGCCG
CCCTTGTCACCGTCACCGTCGCTACGGCTCATTCTTAGCGGGGCGCATCG
TTTTGGAGTGTTTAACTCTTTTCCAACTCTGTCGACTGGCCCTCTTGTCC
GCGCGTCGTTTGGATTCTTCGCGGCGAAAGGGGGACTCACTTCTGGTTCA
CAACAGCAAGCAGGCACAGGTGGGACGGGGAGTACGGGTTGATGGGTGGC
TGAGTAATTGGTGTTGAACGGAGAGCTCGGCCTCGCCTCGACAGGAGGGC
TTTTTCTTGCCGTGTGTGCCGCGCGCTGAGAAAACCAGTTTGAGCGCTTC
ATCCACGAGAACCGGCGGTGTTGCTTGGCGGGTGCCGTTGTTGTCGTGTA
CAAAATAGTTGGTGAAGCGCAAAGGTGAAGATCGACTCGAGAGCTGGCTT
GCTTTGCGACATGGGAGCGGATGAAAGGAAAAACAAAGCCAGAGTTAGTT
ACGAAAACTGCGGTTCCTTAACGGCTTTGATGCTGCCCCAATTCCGGTCC
CGACTCACCGTTCCCTGCTTACCGTACGCGCCGCTTGCGACGAAGAGTTC
GTGCTAGTTCCCTTCAACGATGTGCTTGCGCTCAGCTTTATGTCGACATC
GACACGTTTCAGCGCCCGCAAATCGCCCACCCCCCTCCGTCTTGTCGTCG
TGCAGTTGGTCAAGTTGCGAGGGGCCGGTCTTGCCCCGAAGAGAAGCGAT
CCGTGGCCGTGCTCGGCTCGCTCGGTGGCCGTGGACGACGCGAGAGACCA
GGCGTTCGTTGCCGCCGGTTCGCGGGTGGAGATTTTCAACTTGCAGGCAT
GCATGGGTGAAAAGCTCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1420:132..2201+

>mRNA_H-canaliculatus_F_contig1420.3310.1 ID=mRNA_H-canaliculatus_F_contig1420.3310.1|Name=mRNA_H-canaliculatus_F_contig1420.3310.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1440bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1420:132..2201+ (Hapterophycus canaliculatus Oshoro5f female)
CAAACCAACAAGACCCATGCCCCTGGGTGGACCACAAAGCAAGGGCGGCA
GCAGCAGACATATCAAAATAGCAGCAGCGGCAGGAAGGTGGCAGCGGCGG
CGGATCGGCGCCCCCCATCTCCCGGCGACTCAGGAGGGCCGAGCGACTGG
AGGGCCCTGGCTCCGACCACGCTCGACAGCGCGGCGGTTGGTTCGCTGCG
TTGGGGGGCTGCCGGGGGCGTGCTGGGCGCAAGCGGGCGAGATATGGTGA
ACGGGACGCATGTCTTGGCGGAGACGGTGTTGCACCGCCAGCTAAGCAAA
CCAACAAGACCCATGCCCCTGGGTGGACCACAAAGCAAGGGCGGCAGCAG
CAGACATATCAAAATAGCAGCAGCGGCAGGAAGGTGGCAGCGGCGGCGGA
TCGGCGCCCCCCATCTCCCGGCGACTCAGGAGGGCCGAGCGACTGGAGGG
CCCTGGCTCCGACCACGCTCGACAGCGCGGCGGTTGGTTCGCTGCGTTGG
GGGGCTGCCGGGGGCGTGCTGGGCGCAAGCGGGCGAGATATGGTGAACGG
GACGCATGTCTTGGCGGAGACGGTGTTGCACCGCCAGCTAAGTGGCAACG
TTGCGATTATCCAGCTCTCCAGCGACACCCTCAGCATCGAGTATCAAAAG
GGGGGTGACTATGGCGGGGGGAGTACCAAAACGGCCGACGGTGGTGTTGT
CCGCAGTGTAGAGACGGCGATGGGCGATGGAAACACTGCTTCCTCTCCGT
CATCCATGGAAGGGGAGCAGATGGTGCGATGCGATATCAGCATAAAGGGT
TTCCACCTACAGTGGCAACGTTGCGATTATCCAGCTCTCCAGCGACACCC
TCAGCATCGAGTATCAAAAGGGGGGTGACTATGGCGGGGGGAGTACCAAA
ACGGCCGACGGTGGTGTTGTCCGCAGTGTAGAGACGGCGATGGGCGATGG
AAACACTGCTTCCTCTCCGTCATCCATGGAAGGGGAGCAGATGGTGCGAT
GCGATATCAGCATAAAGGGTTTCCACCTACAGGGGGACTCACTTCTGGTT
CACAACAGCAAGCAGGCACAGGGGGACTCACTTCTGGTTCACAACAGCAA
GCAGGCACAGTTGGTCAAGTTGCGAGGGGCCGGTCTTGCCCCGAAGAGAA
GCGATCCGTGGCCGTGCTCGGCTCGCTCGGTGGCCGTGGACGACGCGAGA
GACCAGGCGTTCGTTGCCGCCGGTTCGCGGGTGGAGATTTTCAACTTGCA
GGCATGCATGGGTGAAAAGCTCTGATTGGTCAAGTTGCGAGGGGCCGGTC
TTGCCCCGAAGAGAAGCGATCCGTGGCCGTGCTCGGCTCGCTCGGTGGCC
GTGGACGACGCGAGAGACCAGGCGTTCGTTGCCGCCGGTTCGCGGGTGGA
GATTTTCAACTTGCAGGCATGCATGGGTGAAAAGCTCTGA
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