mRNA_H-canaliculatus_F_contig14195.3302.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14195.3302.1
Unique NamemRNA_H-canaliculatus_F_contig14195.3302.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14195.3302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14195contigH-canaliculatus_F_contig14195:1371..1881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.2537107-CDS-H-canaliculatus_F_contig14195:1370..17631622929168.2537107-CDS-H-canaliculatus_F_contig14195:1370..1763Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14195 1371..1763 +
1696845703.4579034-CDS-H-canaliculatus_F_contig14195:1370..17631696845703.4579034-CDS-H-canaliculatus_F_contig14195:1370..1763Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14195 1371..1763 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.2646008-UTR-H-canaliculatus_F_contig14195:1763..18811622929168.2646008-UTR-H-canaliculatus_F_contig14195:1763..1881Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14195 1764..1881 +
1696845703.4799452-UTR-H-canaliculatus_F_contig14195:1763..18811696845703.4799452-UTR-H-canaliculatus_F_contig14195:1763..1881Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14195 1764..1881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14195.3302.1prot_H-canaliculatus_F_contig14195.3302.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14195 1371..1763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14195.3302.1

>prot_H-canaliculatus_F_contig14195.3302.1 ID=prot_H-canaliculatus_F_contig14195.3302.1|Name=mRNA_H-canaliculatus_F_contig14195.3302.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=131bp
CVCVCVCAGGVADVRNCVIQRRGQRCRGQERDRERERRGKDGVVPQTAGA
LSRRREREKVLSVVTYLQVSGLDKTTSIVVLGEAAERPDWARPTTFCPLG
SSRLQRMSTHSTHKHKHASGTSRWDAGGWV*
back to top

mRNA from alignment at H-canaliculatus_F_contig14195:1371..1881+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14195.3302.1 ID=mRNA_H-canaliculatus_F_contig14195.3302.1|Name=mRNA_H-canaliculatus_F_contig14195.3302.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=511bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14195:1371..1881+ (Hapterophycus canaliculatus Oshoro5f female)
TGTGTGTGTGTGTGTGTGTGTGCGGGTGGCGTGGCCGATGTCAGAAACTG
CGTCATACAACGTCGAGGGCAGCGATGTCGTGGACAAGAGAGAGACAGAG
AGAGAGAGAGGCGGGGAAAGGACGGCGTCGTCCCTCAAACGGCGGGCGCA
CTTTCGAGGAGAAGAGAGCGAGAGAAAGTCTTGTCGGTGGTTACATACTT
GCAAGTTAGCGGGTTAGACAAGACCACAAGCATTGTCGTCTTGGGGGAGG
CGGCAGAGAGACCGGATTGGGCGAGGCCGACGACGTTCTGCCCTCTCGGA
TCGTCCCGTCTGCAAAGGATGTCGACCCACAGCACACACAAACACAAGCA
TGCGTCCGGGACGTCTCGTTGGGACGCCGGCGGCTGGGTGTAATCGACCC
GCTCGCCTTCTCGCCGCCGTACGCCGACTTCGCGCAGACAACCGTTCGTG
TCCTCCTCGATGGTGCCAAAAGGCAGAAAATCTTAATGCGACGGCCGGTG
CTTCATCAACT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14195:1371..1881+

>mRNA_H-canaliculatus_F_contig14195.3302.1 ID=mRNA_H-canaliculatus_F_contig14195.3302.1|Name=mRNA_H-canaliculatus_F_contig14195.3302.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=786bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14195:1371..1881+ (Hapterophycus canaliculatus Oshoro5f female)
TGTGTGTGTGTGTGTGTGTGTGCGGGTGGCGTGGCCGATGTCAGAAACTG
CGTCATACAACGTCGAGGGCAGCGATGTCGTGGACAAGAGAGAGACAGAG
AGAGAGAGAGGCGGGGAAAGGACGGCGTCGTCCCTCAAACGGCGGGCGCA
CTTTCGAGGAGAAGAGAGCGAGAGAAAGTCTTGTCGGTGGTTACATACTT
GCAAGTTAGCGGGTTAGACAAGACCACAAGCATTGTCGTCTTGGGGGAGG
CGGCAGAGAGACCGGATTGGGCGAGGCCGACGACGTTCTGCCCTCTCGGA
TCGTCCCGTCTGCAAAGGATGTCGACCCACAGCACACACAAACACAAGCA
TGCGTCCGGGACGTCTCGTTGGGACGCCGGCGGCTGGGTGTAATGTGTGT
GTGTGTGTGTGTGTGCGGGTGGCGTGGCCGATGTCAGAAACTGCGTCATA
CAACGTCGAGGGCAGCGATGTCGTGGACAAGAGAGAGACAGAGAGAGAGA
GAGGCGGGGAAAGGACGGCGTCGTCCCTCAAACGGCGGGCGCACTTTCGA
GGAGAAGAGAGCGAGAGAAAGTCTTGTCGGTGGTTACATACTTGCAAGTT
AGCGGGTTAGACAAGACCACAAGCATTGTCGTCTTGGGGGAGGCGGCAGA
GAGACCGGATTGGGCGAGGCCGACGACGTTCTGCCCTCTCGGATCGTCCC
GTCTGCAAAGGATGTCGACCCACAGCACACACAAACACAAGCATGCGTCC
GGGACGTCTCGTTGGGACGCCGGCGGCTGGGTGTAA
back to top