mRNA_H-canaliculatus_F_contig14182.3295.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14182.3295.1
Unique NamemRNA_H-canaliculatus_F_contig14182.3295.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Match: A0A6H5JEB5_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB5_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 6.430e-47
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 1 
Query:    4 QDDMCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVIGKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPS 270
            QDDMCLWNLTV ETV+FAAKLRLPQ+TPDKEKHERVAELLELLGLSHVAD +IGKEGRRGISGGERKRVSIGVELITSPDVLFL EP S
Sbjct:  127 QDDMCLWNLTVRETVMFAAKLRLPQSTPDKEKHERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTS 215
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BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Match: A0A835YP26_9STRA (ATP-binding cassette superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP26_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.390e-31
Identity = 61/89 (68.54%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    4 QDDMCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVIGKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPS 270
            QDD+ LWNLTV ET+LFAAKLRLPQ+ P  EK E V +L+E LGL+  A ++IGKE RRG+SGGERKR SIGVEL+T+P VLFL EP S
Sbjct:  165 QDDLMLWNLTVRETMLFAAKLRLPQSIPLSEKEECVDDLIEKLGLTDCAHSIIGKESRRGVSGGERKRASIGVELVTAPAVLFLDEPTS 253
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BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Match: A0A1Y2CPP1_9FUNG (Uncharacterized protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CPP1_9FUNG)

HSP 1 Score: 117 bits (293), Expect = 1.590e-28
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    4 QDDMCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVIGKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPSS-DAKKASGV 297
            QDD+ L +LTV ET+LF+A+LRLP++ P KEK +RV ++LE LGLSHVA++ +G  G RGISGGER+RVSIGVEL+TSP +LFL EP S  D+  A  V
Sbjct:  424 QDDLLLPSLTVRETLLFSAQLRLPESMPLKEKQDRVDQVLETLGLSHVANSRVGGFGMRGISGGERRRVSIGVELVTSPGILFLDEPTSGLDSYNAHAV 522
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BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Match: A0A507EKL1_9FUNG (ABC transporter domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EKL1_9FUNG)

HSP 1 Score: 112 bits (281), Expect = 6.640e-27
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    4 QDDMCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVIGKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPS 270
            QDD+ L +LTV ET+ F+AKLRLP++   KEK  RV E+LE LGLSHVA + +G  G+RGISGGER+RVSIGVEL+TSP +LFL EP S
Sbjct:  438 QDDLLLPSLTVRETLYFSAKLRLPESMSVKEKMGRVDEVLETLGLSHVAHSRVGGFGQRGISGGERRRVSIGVELVTSPGILFLDEPTS 526
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BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Match: A0A507E8K2_9FUNG (ABC transporter domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507E8K2_9FUNG)

HSP 1 Score: 112 bits (280), Expect = 9.020e-27
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    4 QDDMCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVIGKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPSS-DAKKASGV 297
            QDD  +  LTV ET++F+A LRLP++   + K +RV E++ LLGLSHVAD+ +G + RRGISGGER+RVSIGVEL+TSP VLFL EP S  D+  A  V
Sbjct:  300 QDDCLMETLTVRETLMFSASLRLPESMTRQAKRDRVEEVISLLGLSHVADSKVGGQTRRGISGGERRRVSIGVELVTSPAVLFLDEPTSGLDSYNAHAV 398
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BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Match: A0A0L0HET1_SPIPD (ABC transporter domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HET1_SPIPD)

HSP 1 Score: 112 bits (280), Expect = 9.090e-27
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    4 QDDMCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVIGKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPSS-DAKKASGV 297
            QDD  +  LTV ET++F+A LRLP++   + K +RV E++ LLGLSHVAD+ +G + RRGISGGER+RVSIGVEL+TSP VLFL EP S  D+  A  V
Sbjct:  466 QDDCLMETLTVRETLMFSANLRLPESMTRQAKRDRVEEVISLLGLSHVADSKVGGQTRRGISGGERRRVSIGVELVTSPAVLFLDEPTSGLDSYNAHAV 564
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BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Match: A0A6U1MQ19_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MQ19_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.600e-26
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    4 QDDMCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVIGKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPS 270
            QDD+ L NLTV ET++++AKLRLPQ+ P   K  +V  LL+LL L   A + IG EG+RGISGGERKR +IGVELITSP ++FL EP S
Sbjct:  160 QDDLMLSNLTVRETIMYSAKLRLPQSMPTATKEAKVDALLDLLSLQKCAHSKIGSEGKRGISGGERKRTAIGVELITSPSIVFLDEPTS 248
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BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Match: A0A7S3G4G9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G4G9_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 1.620e-25
Identity = 58/100 (58.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 KQDDMCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVIGKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPSS-DAKKASGV 297
            +QDD+ L  LTV E++ FAAKLRLP+T PDK K + V  ++E LGL+  AD  IG   +RGISGGERKRVSIGVELIT+P ++FL EP S  D+  A+ V
Sbjct:   27 RQDDVLLETLTVRESLYFAAKLRLPRTWPDKRKKKLVNYVIEQLGLNKCADTRIGNTEKRGISGGERKRVSIGVELITNPKLIFLDEPTSGLDSFTAASV 126
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Match: A0A7S2RPA2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPA2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.150e-25
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    4 QDDMCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVIGKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPS 270
            QDD+ L NLTV ETV+F+A LRLP+  P +EK +RV   L+ L L   AD +IG   RRG+SGGERKR ++  EL+T P +LFL EP S
Sbjct:   17 QDDLLLSNLTVRETVMFSALLRLPEEFPQQEKEQRVEATLKALKLQDCADTLIGSHLRRGVSGGERKRTAVACELVTKPSLLFLDEPTS 105
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BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Match: UPI0005297559 (ATP-binding cassette sub-family G member 2-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI0005297559)

HSP 1 Score: 102 bits (254), Expect = 1.000e-24
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    4 QDDMCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVIGKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPSS-DAKKASGV 297
            QDD+ +  LTV E + F+A LRLP++  ++EK+ERV ++++ LGLS VAD+ +G +  RG+SGGERKR +IG+ELIT P +LFL EP +  DA  A+ V
Sbjct:   58 QDDVVMGTLTVRENLKFSAALRLPKSVTEQEKNERVNQIIKELGLSKVADSKVGTQFTRGVSGGERKRTNIGMELITDPAILFLDEPTTGLDASTANAV 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14182.3295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEB5_9PHAE6.430e-4792.13ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835YP26_9STRA7.390e-3168.54ATP-binding cassette superfamily n=1 Tax=Tribonema... [more]
A0A1Y2CPP1_9FUNG1.590e-2861.62Uncharacterized protein n=1 Tax=Rhizoclosmatium gl... [more]
A0A507EKL1_9FUNG6.640e-2765.17ABC transporter domain-containing protein n=1 Tax=... [more]
A0A507E8K2_9FUNG9.020e-2758.59ABC transporter domain-containing protein n=1 Tax=... [more]
A0A0L0HET1_SPIPD9.090e-2758.59ABC transporter domain-containing protein n=1 Tax=... [more]
A0A6U1MQ19_9STRA7.600e-2660.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3G4G9_9EUKA1.620e-2558.00Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A7S2RPA2_9STRA3.150e-2555.06Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI00052975591.000e-2451.52ATP-binding cassette sub-family G member 2-like n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14182contigH-canaliculatus_F_contig14182:2241..2537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue3.3e-35
Seed eggNOG ortholog2880.D8LI56
KEGG koko:K05681,ko:K21396
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929167.6582038-CDS-H-canaliculatus_F_contig14182:2240..25251622929167.6582038-CDS-H-canaliculatus_F_contig14182:2240..2525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14182 2241..2525 -
1696845703.1938996-CDS-H-canaliculatus_F_contig14182:2240..25251696845703.1938996-CDS-H-canaliculatus_F_contig14182:2240..2525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14182 2241..2525 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929167.6797733-UTR-H-canaliculatus_F_contig14182:2525..25371622929167.6797733-UTR-H-canaliculatus_F_contig14182:2525..2537Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14182 2526..2537 -
1696845703.2062967-UTR-H-canaliculatus_F_contig14182:2525..25371696845703.2062967-UTR-H-canaliculatus_F_contig14182:2525..2537Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14182 2526..2537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14182.3295.1prot_H-canaliculatus_F_contig14182.3295.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14182 2241..2525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14182.3295.1

>prot_H-canaliculatus_F_contig14182.3295.1 ID=prot_H-canaliculatus_F_contig14182.3295.1|Name=mRNA_H-canaliculatus_F_contig14182.3295.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
MCLWNLTVAETVLFAAKLRLPQTTPDKEKHERVAELLELLGLSHVADNVI
GKEGRRGISGGERKRVSIGVELITSPDVLFLGEPPSSDAKKASGV
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mRNA from alignment at H-canaliculatus_F_contig14182:2241..2537-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14182.3295.1 ID=mRNA_H-canaliculatus_F_contig14182.3295.1|Name=mRNA_H-canaliculatus_F_contig14182.3295.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=297bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14182:2241..2537- (Hapterophycus canaliculatus Oshoro5f female)
AAACAGGACGACATGTGCCTGTGGAACCTCACGGTGGCGGAGACGGTCTT
GTTCGCCGCGAAGCTGCGGCTGCCCCAGACGACGCCGGACAAGGAGAAGC
ACGAGAGGGTCGCGGAGCTCCTGGAGCTCCTGGGACTCTCGCACGTGGCC
GACAACGTCATCGGCAAGGAGGGCCGGAGGGGCATCTCCGGGGGAGAGAG
GAAGCGCGTGAGCATCGGGGTCGAGCTCATCACCTCTCCCGACGTGCTGT
TCCTGGGTGAGCCTCCCTCCTCCGACGCGAAGAAAGCGAGCGGGGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14182:2241..2537-

>mRNA_H-canaliculatus_F_contig14182.3295.1 ID=mRNA_H-canaliculatus_F_contig14182.3295.1|Name=mRNA_H-canaliculatus_F_contig14182.3295.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14182:2241..2537- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCCTGTGGAACCTCACGGTGGCGGAGACGGTCTTGTTCGCCGCGAA
GCTGCGGCTGCCCCAGACGACGCCGGACAAGGAGAAGCACGAGAGGGTCG
CGGAGCTCCTGGAGCTCCTGGGACTCTCGCACGTGGCCGACAACGTCATC
GGCAAGGAGGGCCGGAGGGGCATCTCCGGGGGAGAGAGGAAGCGCGTGAG
CATCGGGGTCGAGCTCATCACCTCTCCCGACGTGCTGTTCCTGGGTGAGC
CTCCCTCCTCCGACGCGAAGAAAGCGAGCGGGGTTATGTGCCTGTGGAAC
CTCACGGTGGCGGAGACGGTCTTGTTCGCCGCGAAGCTGCGGCTGCCCCA
GACGACGCCGGACAAGGAGAAGCACGAGAGGGTCGCGGAGCTCCTGGAGC
TCCTGGGACTCTCGCACGTGGCCGACAACGTCATCGGCAAGGAGGGCCGG
AGGGGCATCTCCGGGGGAGAGAGGAAGCGCGTGAGCATCGGGGTCGAGCT
CATCACCTCTCCCGACGTGCTGTTCCTGGGTGAGCCTCCCTCCTCCGACG
CGAAGAAAGCGAGCGGGGTT
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