prot_H-canaliculatus_F_contig14177.3291.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig14177.3291.1
Unique Nameprot_H-canaliculatus_F_contig14177.3291.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length159
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14177.3291.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 6.700e-90
Identity = 143/156 (91.67%), Postives = 149/156 (95.51%), Query Frame = 0 
Query:    2 RIIHANWFAVFLPLFLCFLILCLSPCLHWASWGDGGAYLLGMLLGWIPALICLLLVCSRLQGDNVSMNVVMSPLWAVDLVLFLAPVAMAIAVAVRRMRRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGGRETLTAAEVFTPLIVWC 157
            RI HANWFAVF PLF CFLILCLSPCL WASWGDGG YLLGMLLGWIPA++CL+LVCSRLQGDNVSMNV+MSPLWAVDLVL LAPVAMAIAVAVRRM+RGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEG R+TLTAAEVFTPLIVWC
Sbjct:  445 RITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWC 600
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BLAST of mRNA_H-canaliculatus_F_contig14177.3291.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 1.870e-84
Identity = 139/155 (89.68%), Postives = 146/155 (94.19%), Query Frame = 0 
Query:    3 IIHANWFAVFLPLFLCFLILCLSPCLHWASWGDGGAYLLGMLLGWIPALICLLLVCSRLQGDNVSMNVVMSPLWAVDLVLFLAPVAMAIAVAVRRMRRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGGRETLTAAEVFTPLIVWC 157
            I HANWFAVF PLF CFLILCLSPCL WASWGDGG YLLGMLLGWIPA++CL+LVCSRLQGDNVSMNV+MSPLWAVDLVL LAPV MAIAVAVRRM+RGEPVEA LVHTLAASWCLLTPVLAPVVAFEIALAVYVEG R+TL+AAEVFTPLIVWC
Sbjct: 1077 ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVGMAIAVAVRRMQRGEPVEATLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLSAAEVFTPLIVWC 1231
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14177.3291.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM1_ECTSI6.700e-9091.67F-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L5A3_9PHAE1.870e-8489.68F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..58
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..69
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 94..112
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 138..158
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..93
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 113..137
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..31
NoneNo IPR availableTMHMMTMhelixcoord: 73..95
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 39..61
NoneNo IPR availableTMHMMTMhelixcoord: 115..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14177contigH-canaliculatus_F_contig14177:754..2598 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14177.3291.1mRNA_H-canaliculatus_F_contig14177.3291.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig14177 754..2598 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig14177.3291.1 ID=prot_H-canaliculatus_F_contig14177.3291.1|Name=mRNA_H-canaliculatus_F_contig14177.3291.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=159bp
LRIIHANWFAVFLPLFLCFLILCLSPCLHWASWGDGGAYLLGMLLGWIPA
LICLLLVCSRLQGDNVSMNVVMSPLWAVDLVLFLAPVAMAIAVAVRRMRR
GEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGGRETLTAAEVF
TPLIVWCW*
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