mRNA_H-canaliculatus_F_contig14173.3290.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14173.3290.1
Unique NamemRNA_H-canaliculatus_F_contig14173.3290.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14173.3290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14173contigH-canaliculatus_F_contig14173:1312..1941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size630
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929167.0805597-UTR-H-canaliculatus_F_contig14173:1311..16021622929167.0805597-UTR-H-canaliculatus_F_contig14173:1311..1602Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14173 1312..1602 +
1696845702.8952117-UTR-H-canaliculatus_F_contig14173:1311..16021696845702.8952117-UTR-H-canaliculatus_F_contig14173:1311..1602Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14173 1312..1602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929167.0937128-CDS-H-canaliculatus_F_contig14173:1602..19411622929167.0937128-CDS-H-canaliculatus_F_contig14173:1602..1941Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14173 1603..1941 +
1696845702.9043248-CDS-H-canaliculatus_F_contig14173:1602..19411696845702.9043248-CDS-H-canaliculatus_F_contig14173:1602..1941Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14173 1603..1941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14173.3290.1prot_H-canaliculatus_F_contig14173.3290.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14173 1603..1941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14173.3290.1

>prot_H-canaliculatus_F_contig14173.3290.1 ID=prot_H-canaliculatus_F_contig14173.3290.1|Name=mRNA_H-canaliculatus_F_contig14173.3290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
MLCNVAKCFMRASPRLGPVTERDRGSDTSRRRRSAWAPVVPNQPETPPES
RRAILGVARTNRVDFGGKANVVGRDFRCASGLTFNRTQRPRFRATPEDCR
RTRVPCYALLRS*
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mRNA from alignment at H-canaliculatus_F_contig14173:1312..1941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14173.3290.1 ID=mRNA_H-canaliculatus_F_contig14173.3290.1|Name=mRNA_H-canaliculatus_F_contig14173.3290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14173:1312..1941+ (Hapterophycus canaliculatus Oshoro5f female)
CAAAGACGGCCTGCGCGCGGACGCGCGGGATCGGAGGCTTCAAACAGCTG
TGCGTTTTTCGTCTTCGTGGTTTACGCGCCTCGTCATGTCTCACTTCCTG
CTCCATCACCTTTTTTCGACCGCCAGGCGACGAGGAGAAGGCAAAACGGA
GTCACCTATCACACGAGTACCGCCGTTGACGAAGACGGGTTCTGTCGAGG
GCCCTAGATCCGAACGAGGCCGCTCGCCTCATGCGTTTTCATTCCCGTCT
TGCGCAAGAACGCCGCTAGAGGTTTTCACCGAGGGCGGACCATGTTGTGT
AATGTGGCGAAATGTTTTATGCGAGCGTCCCCGCGACTGGGACCGGTGAC
AGAGCGAGACCGCGGCTCTGACACGAGTCGACGAAGGCGATCTGCGTGGG
CCCCTGTCGTGCCCAACCAACCCGAGACGCCGCCCGAGTCGCGGCGAGCG
ATCCTTGGCGTCGCTCGTACGAACCGGGTCGATTTCGGCGGCAAGGCAAA
CGTGGTCGGCAGAGACTTCCGTTGTGCCTCAGGTCTTACCTTCAATCGAA
CGCAGCGACCGAGGTTCCGAGCAACCCCTGAGGACTGCCGACGAACCCGT
GTCCCATGCTACGCCCTCTTACGCTCTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14173:1312..1941+

>mRNA_H-canaliculatus_F_contig14173.3290.1 ID=mRNA_H-canaliculatus_F_contig14173.3290.1|Name=mRNA_H-canaliculatus_F_contig14173.3290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14173:1312..1941+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGTGTAATGTGGCGAAATGTTTTATGCGAGCGTCCCCGCGACTGGG
ACCGGTGACAGAGCGAGACCGCGGCTCTGACACGAGTCGACGAAGGCGAT
CTGCGTGGGCCCCTGTCGTGCCCAACCAACCCGAGACGCCGCCCGAGTCG
CGGCGAGCGATCCTTGGCGTCGCTCGTACGAACCGGGTCGATTTCGGCGG
CAAGGCAAACGTGGTCGGCAGAGACTTCCGTTGTGCCTCAGGTCTTACCT
TCAATCGAACGCAGCGACCGAGGTTCCGAGCAACCCCTGAGGACTGCCGA
CGAACCCGTGTCCCATGCTACGCCCTCTTACGCTCTTAGATGTTGTGTAA
TGTGGCGAAATGTTTTATGCGAGCGTCCCCGCGACTGGGACCGGTGACAG
AGCGAGACCGCGGCTCTGACACGAGTCGACGAAGGCGATCTGCGTGGGCC
CCTGTCGTGCCCAACCAACCCGAGACGCCGCCCGAGTCGCGGCGAGCGAT
CCTTGGCGTCGCTCGTACGAACCGGGTCGATTTCGGCGGCAAGGCAAACG
TGGTCGGCAGAGACTTCCGTTGTGCCTCAGGTCTTACCTTCAATCGAACG
CAGCGACCGAGGTTCCGAGCAACCCCTGAGGACTGCCGACGAACCCGTGT
CCCATGCTACGCCCTCTTACGCTCTTAG
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