mRNA_H-canaliculatus_F_contig1417.3286.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1417.3286.1
Unique NamemRNA_H-canaliculatus_F_contig1417.3286.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1417.3286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1417contigH-canaliculatus_F_contig1417:9144..10372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size974
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1417.3286.1prot_H-canaliculatus_F_contig1417.3286.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1417 9500..9670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.6270437-UTR-H-canaliculatus_F_contig1417:9143..92281622929166.6270437-UTR-H-canaliculatus_F_contig1417:9143..9228Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1417 9144..9228 +
1696845702.6993253-UTR-H-canaliculatus_F_contig1417:9143..92281696845702.6993253-UTR-H-canaliculatus_F_contig1417:9143..9228Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1417 9144..9228 +
1622929166.6443512-UTR-H-canaliculatus_F_contig1417:9483..94991622929166.6443512-UTR-H-canaliculatus_F_contig1417:9483..9499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1417 9484..9499 +
1696845702.7075663-UTR-H-canaliculatus_F_contig1417:9483..94991696845702.7075663-UTR-H-canaliculatus_F_contig1417:9483..9499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1417 9484..9499 +
1622929166.6749265-UTR-H-canaliculatus_F_contig1417:9670..103721622929166.6749265-UTR-H-canaliculatus_F_contig1417:9670..10372Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1417 9671..10372 +
1696845702.7253187-UTR-H-canaliculatus_F_contig1417:9670..103721696845702.7253187-UTR-H-canaliculatus_F_contig1417:9670..10372Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1417 9671..10372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.6580377-CDS-H-canaliculatus_F_contig1417:9499..96701622929166.6580377-CDS-H-canaliculatus_F_contig1417:9499..9670Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1417 9500..9670 +
1696845702.715699-CDS-H-canaliculatus_F_contig1417:9499..96701696845702.715699-CDS-H-canaliculatus_F_contig1417:9499..9670Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1417 9500..9670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1417.3286.1

>prot_H-canaliculatus_F_contig1417.3286.1 ID=prot_H-canaliculatus_F_contig1417.3286.1|Name=mRNA_H-canaliculatus_F_contig1417.3286.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
MVQEADTSPYTGTKITHEDPWRAEEMNRMAEGLDWAMKDTLKPEGNFHAN
YLALCR*
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mRNA from alignment at H-canaliculatus_F_contig1417:9144..10372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1417.3286.1 ID=mRNA_H-canaliculatus_F_contig1417.3286.1|Name=mRNA_H-canaliculatus_F_contig1417.3286.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1229bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1417:9144..10372+ (Hapterophycus canaliculatus Oshoro5f female)
ACAGCCGTGATTACTTCTTTTTAAAGAAAGCATAACAACACCGCTTTGTC
ATGGAGGGCGAATTTTACTCTACAGTATAGCACAGGTACACCGTGGATGG
TTGTGTTGGTGGTGTGTCACAATGTCTCAACATTCGAGACGAAAATGCCG
CGCAACAGTTTTCAGATCTTCCGAGACGTGTATCAGAGACCCCCCTTAAT
ATACGAGAGTAAGGTTTCTGCGCATCGAGTATCATTGGATGTTGATTCAT
CTAATGTTTTTTATAAAACAAGTCAACATCGCCGAAGGAATAATGGTTGA
TTATGCCCGTTGTCGATTGTGGCCGCTTACGTGAGAGTAGGTCGGCCGAC
GGAGAGATGGTGCAAGAGGCGGATACGTCCCCATATACTGGAACGAAGAT
CACGCACGAAGACCCATGGCGAGCTGAGGAGATGAACAGGATGGCGGAGG
GTCTGGATTGGGCCATGAAAGACACGCTTAAGCCCGAAGGGAACTTCCAT
GCCAATTATCTTGCTTTGTGTCGGTGAGCCGAGGAATTAGAGTGTCTCTA
CAAGTACTTGAAGCATAAGGCATGGTGGCCGCGAATCAAGCATATCGACT
ATATGGTACATCGACTATGTGATGCACTGCTGCTGCTGTAGCCTAGGTTG
GACACACACCCGTGGATATAAAAACGCGGTACAAGTATGCTTGTGGCAGC
GTTCGTTGGCCGGGAAACGTAGCAAACTACGGCTGTCGTACGTATCGAAG
ACGAAAGGCCGCAGAGCATAGATAGTTTGAATGCGGCAAAAACACAAAGT
AAGGTGGAGTTCAAGCATAGACACAGAATTTTGTCAGCTATTTCCCTGAA
CAATCTCTGGAGCTCCAGTACGGTGGCGGTAGTAGATGAGGCAAGGAACT
GGGGCAGCCGCAGCAATTAAATCAATCGAGAGACGTGCTTCTCGAGAGAA
CAAGAGGAAGAACCTGGTAGGTATGATGCTGTCCCTACTCACCTCGCAAG
TGACGAATATACAGTAGTAGCCTGGAGTTAAGTGTATCTCACGTCCTCGG
TATTGTTCATCTGCGGGCCGTTCGCTAGTCTAGTCCACTATCTCCCGCGG
TATGACATCCATTTCCGGGGTTTCAGTGTTAAACGTGTTTACGTCTCTCC
TCTGCTGGTAACTTTTAACTTTCGAGTCGTGCGCACTTCGCCGAATGAAG
CGGCTGACGCCGAGGATAACAACGTAGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1417:9144..10372+

>mRNA_H-canaliculatus_F_contig1417.3286.1 ID=mRNA_H-canaliculatus_F_contig1417.3286.1|Name=mRNA_H-canaliculatus_F_contig1417.3286.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1417:9144..10372+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGCAAGAGGCGGATACGTCCCCATATACTGGAACGAAGATCACGCA
CGAAGACCCATGGCGAGCTGAGGAGATGAACAGGATGGCGGAGGGTCTGG
ATTGGGCCATGAAAGACACGCTTAAGCCCGAAGGGAACTTCCATGCCAAT
TATCTTGCTTTGTGTCGGTGAATGGTGCAAGAGGCGGATACGTCCCCATA
TACTGGAACGAAGATCACGCACGAAGACCCATGGCGAGCTGAGGAGATGA
ACAGGATGGCGGAGGGTCTGGATTGGGCCATGAAAGACACGCTTAAGCCC
GAAGGGAACTTCCATGCCAATTATCTTGCTTTGTGTCGGTGA
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